Accelerating the Next Generation Long Read Mapping with the FPGA-Based System - Chen, Peng; Wang, Chao; Li, Xi; Zhou, Xuehai (IEEE/ACM transactions on computational biology and bioinformatics, 2014)
Keywords: Acceleration; Algorithms; Alignment; Bioinformatics; Biology; Computer programs; Equipment Design; Genomics; Genomics - instrumentation; Genomics - methods; High-Throughput Nucleotide Sequencing - instrumentation; High-Throughput Nucleotide Sequencing - methods; Humans; Indexes; Mapping; Platforms; Sequence Alignment - instrumentation; Sequence Alignment - methods; Sequence Analysis, DNA - instrumentation; Sequence Analysis, DNA - methods; Sequencing; Sequential analysis; Software; Software algorithms; State of the art; Smith-Waterman; long read mapping; BWA-SW; hardware acceleration; Sequence alignment