Plant-specific ribosome biogenesis factors in Arabidopsis thaliana with essential function in rRNA processing

Abstract rRNA processing and assembly of ribosomal proteins during maturation of ribosomes involve many ribosome biogenesis factors (RBFs). Recent studies identified differences in the set of RBFs in humans and yeast, and the existence of plant-specific RBFs has been proposed as well. To identify su...

Full description

Saved in:
Bibliographic Details
Published inNucleic acids research Vol. 47; no. 4; pp. 1880 - 1895
Main Authors Palm, Denise, Streit, Deniz, Shanmugam, Thiruvenkadam, Weis, Benjamin L, Ruprecht, Maike, Simm, Stefan, Schleiff, Enrico
Format Journal Article
LanguageEnglish
Published England Oxford University Press 28.02.2019
Subjects
Arabidopsis - genetics
Arabidopsis Proteins - genetics
DNA, Bacterial - genetics
Gene Expression Regulation, Plant - genetics
Molecular Biology
Nuclear Proteins - genetics
Ribosomal Proteins - genetics
Ribosomes - genetics
RNA Precursors - genetics
RNA Processing, Post-Transcriptional - genetics
RNA, Ribosomal - genetics
Online AccessGet full text

Cover

Abstract Abstract rRNA processing and assembly of ribosomal proteins during maturation of ribosomes involve many ribosome biogenesis factors (RBFs). Recent studies identified differences in the set of RBFs in humans and yeast, and the existence of plant-specific RBFs has been proposed as well. To identify such plant-specific RBFs, we characterized T-DNA insertion mutants of 15 Arabidopsis thaliana genes encoding nuclear proteins with nucleotide binding properties that are not orthologues to yeast or human RBFs. Mutants of nine genes show an altered rRNA processing ranging from inhibition of initial 35S pre-rRNA cleavage to final maturation events like the 6S pre-rRNA processing. These phenotypes led to their annotation as 'involved in rRNA processing' - IRP. The irp mutants are either lethal or show developmental and stress related phenotypes. We identified IRPs for maturation of the plant-specific precursor 5′-5.8S and one affecting the pathway with ITS2 first cleavage of the 35S pre-rRNA transcript. Moreover, we realized that 5′-5.8S processing is essential, while a mutant causing 6S accumulation shows only a weak phenotype. Thus, we demonstrate the importance of the maturation of the plant-specific precursor 5′-5.8S for plant development as well as the occurrence of an ITS2 first cleavage pathway in fast dividing tissues.
AbstractList Abstract rRNA processing and assembly of ribosomal proteins during maturation of ribosomes involve many ribosome biogenesis factors (RBFs). Recent studies identified differences in the set of RBFs in humans and yeast, and the existence of plant-specific RBFs has been proposed as well. To identify such plant-specific RBFs, we characterized T-DNA insertion mutants of 15 Arabidopsis thaliana genes encoding nuclear proteins with nucleotide binding properties that are not orthologues to yeast or human RBFs. Mutants of nine genes show an altered rRNA processing ranging from inhibition of initial 35S pre-rRNA cleavage to final maturation events like the 6S pre-rRNA processing. These phenotypes led to their annotation as 'involved in rRNA processing' - IRP. The irp mutants are either lethal or show developmental and stress related phenotypes. We identified IRPs for maturation of the plant-specific precursor 5′-5.8S and one affecting the pathway with ITS2 first cleavage of the 35S pre-rRNA transcript. Moreover, we realized that 5′-5.8S processing is essential, while a mutant causing 6S accumulation shows only a weak phenotype. Thus, we demonstrate the importance of the maturation of the plant-specific precursor 5′-5.8S for plant development as well as the occurrence of an ITS2 first cleavage pathway in fast dividing tissues.
rRNA processing and assembly of ribosomal proteins during maturation of ribosomes involve many ribosome biogenesis factors (RBFs). Recent studies identified differences in the set of RBFs in humans and yeast, and the existence of plant-specific RBFs has been proposed as well. To identify such plant-specific RBFs, we characterized T-DNA insertion mutants of 15 Arabidopsis thaliana genes encoding nuclear proteins with nucleotide binding properties that are not orthologues to yeast or human RBFs. Mutants of nine genes show an altered rRNA processing ranging from inhibition of initial 35S pre-rRNA cleavage to final maturation events like the 6S pre-rRNA processing. These phenotypes led to their annotation as ‘involved in rRNA processing’ - IRP . The irp mutants are either lethal or show developmental and stress related phenotypes. We identified IRPs for maturation of the plant-specific precursor 5′-5.8S and one affecting the pathway with ITS2 first cleavage of the 35S pre-rRNA transcript. Moreover, we realized that 5′-5.8S processing is essential, while a mutant causing 6S accumulation shows only a weak phenotype. Thus, we demonstrate the importance of the maturation of the plant-specific precursor 5′-5.8S for plant development as well as the occurrence of an ITS2 first cleavage pathway in fast dividing tissues.
rRNA processing and assembly of ribosomal proteins during maturation of ribosomes involve many ribosome biogenesis factors (RBFs). Recent studies identified differences in the set of RBFs in humans and yeast, and the existence of plant-specific RBFs has been proposed as well. To identify such plant-specific RBFs, we characterized T-DNA insertion mutants of 15 Arabidopsis thaliana genes encoding nuclear proteins with nucleotide binding properties that are not orthologues to yeast or human RBFs. Mutants of nine genes show an altered rRNA processing ranging from inhibition of initial 35S pre-rRNA cleavage to final maturation events like the 6S pre-rRNA processing. These phenotypes led to their annotation as 'involved in rRNA processing' - IRP. The irp mutants are either lethal or show developmental and stress related phenotypes. We identified IRPs for maturation of the plant-specific precursor 5'-5.8S and one affecting the pathway with ITS2 first cleavage of the 35S pre-rRNA transcript. Moreover, we realized that 5'-5.8S processing is essential, while a mutant causing 6S accumulation shows only a weak phenotype. Thus, we demonstrate the importance of the maturation of the plant-specific precursor 5'-5.8S for plant development as well as the occurrence of an ITS2 first cleavage pathway in fast dividing tissues.
Author Shanmugam, Thiruvenkadam
Simm, Stefan
Palm, Denise
Schleiff, Enrico
Weis, Benjamin L
Streit, Deniz
Ruprecht, Maike
AuthorAffiliation 1 Institute for Molecular Biosciences, Goethe University Frankfurt, Max von Laue Str. 9, D-60438 Frankfurt, Germany
2 Frankfurt Institute for Advanced Studies, D-60438 Frankfurt, Germany
3 Buchmann Institute for Molecular Life Sciences, Goethe University Frankfurt, D-60438 Frankfurt, Germany
AuthorAffiliation_xml – name: 1 Institute for Molecular Biosciences, Goethe University Frankfurt, Max von Laue Str. 9, D-60438 Frankfurt, Germany
– name: 2 Frankfurt Institute for Advanced Studies, D-60438 Frankfurt, Germany
– name: 3 Buchmann Institute for Molecular Life Sciences, Goethe University Frankfurt, D-60438 Frankfurt, Germany
Author_xml – sequence: 1
  givenname: Denise
  surname: Palm
  fullname: Palm, Denise
  organization: Institute for Molecular Biosciences, Goethe University Frankfurt, Max von Laue Str. 9, D-60438 Frankfurt, Germany
– sequence: 2
  givenname: Deniz
  surname: Streit
  fullname: Streit, Deniz
  organization: Institute for Molecular Biosciences, Goethe University Frankfurt, Max von Laue Str. 9, D-60438 Frankfurt, Germany
– sequence: 3
  givenname: Thiruvenkadam
  surname: Shanmugam
  fullname: Shanmugam, Thiruvenkadam
  organization: Institute for Molecular Biosciences, Goethe University Frankfurt, Max von Laue Str. 9, D-60438 Frankfurt, Germany
– sequence: 4
  givenname: Benjamin L
  surname: Weis
  fullname: Weis, Benjamin L
  organization: Institute for Molecular Biosciences, Goethe University Frankfurt, Max von Laue Str. 9, D-60438 Frankfurt, Germany
– sequence: 5
  givenname: Maike
  surname: Ruprecht
  fullname: Ruprecht, Maike
  organization: Institute for Molecular Biosciences, Goethe University Frankfurt, Max von Laue Str. 9, D-60438 Frankfurt, Germany
– sequence: 6
  givenname: Stefan
  surname: Simm
  fullname: Simm, Stefan
  organization: Institute for Molecular Biosciences, Goethe University Frankfurt, Max von Laue Str. 9, D-60438 Frankfurt, Germany
– sequence: 7
  givenname: Enrico
  orcidid: 0000-0002-0518-3489
  surname: Schleiff
  fullname: Schleiff, Enrico
  email: schleiff@bio.uni-frankfurt.de
  organization: Institute for Molecular Biosciences, Goethe University Frankfurt, Max von Laue Str. 9, D-60438 Frankfurt, Germany
BackLink https://www.ncbi.nlm.nih.gov/pubmed/30576513$$D View this record in MEDLINE/PubMed
BookMark eNp9kc1r3DAQxUVJaDZpT70XnUqguNHow15dCkvoF4QklPYsZHm8q9aWXMluyX9fLbsN7aWngfd-vBnmnZOTEAMS8gLYG2BaXAWbrrbfH4DX8ISsQNS8krrmJ2TFBFMVMLk-I-c5f2MMJCj5lJwVvakViBUZ7wcb5ipP6HzvHU2-jTmOSFsftxgw-0x76-aYMvWBbpJtfRenvTzv7OBtsPSXn3cUc8YwezvQfglu9jHs-fT5dkOnFF2xfdg-I6e9HTI-P84L8vX9uy_XH6ubuw-frjc3lZPA58pybBtgDVoB6x50yzmDplPoarUG0clGKY0WmwZaaJkSSspOaAacK9b3VlyQt4fcaWlH7Fy5LNnBTMmPNj2YaL351wl-Z7bxp6mFFgJkCbg8BqT4Y8E8m9Fnh0N5FsYlGw5K67USUhf09QF1KeacsH9cA8zsCzKlIHMsqNAv_77skf3TSAFeHYC4TP9N-g1NnJ3s
CitedBy_id crossref_primary_10_1093_plphys_kiaa085
crossref_primary_10_1093_plcell_koac216
crossref_primary_10_1093_plphys_kiab011
crossref_primary_10_3389_fpls_2022_830840
crossref_primary_10_3390_plants11223148
crossref_primary_10_1080_15476286_2023_2298532
crossref_primary_10_1016_j_cclet_2022_05_045
crossref_primary_10_1111_tpj_16205
crossref_primary_10_1093_plcell_koac052
crossref_primary_10_1093_nar_gkz679
crossref_primary_10_1242_dev_198739
crossref_primary_10_3390_plants12101941
crossref_primary_10_3390_plants9050582
crossref_primary_10_3390_plants9070892
crossref_primary_10_3390_genes14071463
crossref_primary_10_1080_15476286_2022_2071517
crossref_primary_10_3389_fpls_2023_1303398
crossref_primary_10_3390_life12030364
crossref_primary_10_3390_ijms22116160
crossref_primary_10_3389_fpls_2021_684626
crossref_primary_10_3389_fpls_2020_00948
crossref_primary_10_3390_plants11162097
crossref_primary_10_1093_jxb_erab434
crossref_primary_10_3390_ijms23126509
crossref_primary_10_1186_s12870_022_03852_x
crossref_primary_10_3390_cells8121603
crossref_primary_10_1016_j_molp_2023_03_013
crossref_primary_10_1016_j_scienta_2019_109143
crossref_primary_10_3390_plants9081016
crossref_primary_10_1016_j_xplc_2022_100342
crossref_primary_10_3390_ijms23010368
crossref_primary_10_3390_plants13010091
crossref_primary_10_1038_s41598_023_36426_4
crossref_primary_10_1186_s12870_023_04561_9
Cites_doi 10.1007/s00018-008-8027-0
10.1101/gr.1224503
10.1105/tpc.13.7.1499
10.1016/j.cell.2006.03.030
10.1038/ncomms11390
10.1093/nar/gkt1137
10.1007/s00412-014-0463-z
10.1093/jxb/erv391
10.1104/pp.73.3.746
10.1073/pnas.1412697111
10.1074/jbc.M311977200
10.1111/j.1365-313X.2010.04422.x
10.1093/nar/21.25.5803
10.1111/pce.12535
10.1042/BCJ20160516
10.1371/journal.pone.0054084
10.1016/j.molp.2015.11.003
10.1038/nsmb.3476
10.1093/jxb/erv337
10.1093/jxb/erw272
10.1093/nar/gks1067
10.7554/eLife.30189
10.1093/nar/gkw714
10.1093/nar/29.1.102
10.1080/15476286.2016.1259781
10.1093/nar/gkq172
10.1105/tpc.17.00778
10.1104/pp.104.046086
10.1186/gb-2003-4-10-r64
10.1128/MCB.26.2.513-522.2006
10.1126/science.aal1880
10.1016/S1097-2765(03)00178-3
10.3389/fpls.2018.00132
10.1093/nar/gkx1019
10.1016/j.jprot.2011.02.006
10.1073/pnas.1222061110
10.1111/j.1365-313X.2006.03016.x
10.1146/annurev.arplant.59.032607.092911
10.1038/nsmb.2939
10.1111/tpj.12703
10.1080/15476286.2016.1154252
10.4137/BBI.S20751
10.1093/nar/gkv1344
10.1016/0005-2787(75)90274-9
10.1016/S0968-0004(01)01826-6
10.1016/j.tibs.2017.05.005
10.1126/science.1223944
10.1016/S1097-2765(03)00429-5
10.1038/s41467-017-00761-8
10.1073/pnas.72.1.69
10.1126/science.aar5428
10.1186/s12870-018-1255-z
10.1016/j.molcel.2013.08.011
10.1093/nar/gkm200
10.1111/j.1365-313X.2010.04393.x
10.1038/nsmb.3495
10.3389/fpls.2017.02240
10.1093/nar/gkr944
10.1093/nar/19.6.1349
10.1016/j.tibs.2003.11.001
10.1126/science.266.5185.605
10.1093/pcp/pcv188
10.15252/embj.201798499
10.1021/pr201106n
10.1261/rna.047563.114
10.3389/fpls.2017.01813
10.1111/tpj.13745
10.1111/tpj.13125
10.1104/pp.010475
10.1016/j.jprot.2015.04.031
10.1371/journal.pone.0000718
10.1002/wrna.1484
10.1091/mbc.e04-09-0791
10.1093/nar/26.11.2638
10.1046/j.1365-313X.1998.00214.x
10.1038/362219a0
10.1038/nprot.2009.32
10.1016/0003-2697(87)90021-2
10.1186/1471-2164-9-220
10.1111/tpj.12371
10.1016/j.cell.2015.11.027
10.1105/tpc.109.068320
10.1261/rna.043471.113
10.1093/nar/gku1203
10.1111/j.1365-3040.2005.01477.x
10.1155/2013/614735
10.1007/s00436-014-4060-0
10.1126/science.aan2755
10.1073/pnas.1108626108
10.1093/jxb/erw288
10.1093/emboj/cdg040
10.1016/j.cell.2016.06.014
10.1093/nar/gkr367
10.1016/j.str.2016.12.011
10.1016/j.tplants.2015.07.003
10.1093/nar/gkf498
10.3389/fpls.2017.01815
10.1104/pp.011577
ContentType Journal Article
Copyright The Author(s) 2018. Published by Oxford University Press on behalf of Nucleic Acids Research. 2019
The Author(s) 2018. Published by Oxford University Press on behalf of Nucleic Acids Research.
Copyright_xml – notice: The Author(s) 2018. Published by Oxford University Press on behalf of Nucleic Acids Research. 2019
– notice: The Author(s) 2018. Published by Oxford University Press on behalf of Nucleic Acids Research.
DBID TOX
CGR
CUY
CVF
ECM
EIF
NPM
AAYXX
CITATION
7X8
5PM
DOI 10.1093/nar/gky1261
DatabaseName OUP_牛津大学出版社OA刊
Medline
MEDLINE
MEDLINE (Ovid)
MEDLINE
MEDLINE
PubMed
CrossRef
MEDLINE - Academic
PubMed Central (Full Participant titles)
DatabaseTitle MEDLINE
Medline Complete
MEDLINE with Full Text
PubMed
MEDLINE (Ovid)
CrossRef
MEDLINE - Academic
DatabaseTitleList

MEDLINE
Database_xml – sequence: 1
  dbid: NPM
  name: PubMed
  url: https://proxy.k.utb.cz/login?url=http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=PubMed
  sourceTypes: Index Database
– sequence: 2
  dbid: EIF
  name: MEDLINE
  url: https://proxy.k.utb.cz/login?url=https://www.webofscience.com/wos/medline/basic-search
  sourceTypes: Index Database
– sequence: 3
  dbid: TOX
  name: OUP_牛津大学出版社OA刊
  url: https://academic.oup.com/journals/
  sourceTypes: Publisher
DeliveryMethod fulltext_linktorsrc
Discipline Anatomy & Physiology
Chemistry
EISSN 1362-4962
EndPage 1895
ExternalDocumentID 10_1093_nar_gky1261
30576513
10.1093/nar/gky1261
Genre Research Support, Non-U.S. Gov't
Journal Article
GrantInformation_xml – fundername: Deutsche Forschungsgemeinschaft
  grantid: DFG SFB902
  funderid: 10.13039/501100001659
– fundername: ; ;
  grantid: DFG SFB902
GroupedDBID ---
-DZ
-~X
.I3
0R~
123
18M
1TH
29N
2WC
4.4
482
53G
5VS
5WA
70E
85S
A8Z
AAFWJ
AAHBH
AAMVS
AAOGV
AAPPN
AAPXW
AAUQX
AAVAP
ABPTD
ABQLI
ABXVV
ACGFO
ACGFS
ACIWK
ACNCT
ACPRK
ADBBV
ADHZD
AEGXH
AENEX
AENZO
AFFNX
AFPKN
AFRAH
AFULF
AHMBA
AIAGR
ALMA_UNASSIGNED_HOLDINGS
ALUQC
AOIJS
BAWUL
BAYMD
BCNDV
BTTYL
CAG
CIDKT
CS3
CZ4
DIK
DU5
D~K
E3Z
EBD
EBS
EMOBN
ESTFP
F5P
GROUPED_DOAJ
GX1
H13
HH5
HYE
HZ~
IH2
KAQDR
KQ8
KSI
M49
M~E
NU-
OAWHX
OBC
OBS
OEB
OES
OJQWA
P2P
PEELM
PQQKQ
R44
RD5
RNS
ROL
ROX
ROZ
RPM
RXO
SV3
TN5
TOX
TR2
WG7
WOQ
X7H
XSB
YSK
ZKX
~91
~D7
~KM
CGR
CUY
CVF
ECM
EIF
NPM
AAYXX
CITATION
7X8
5PM
ID FETCH-LOGICAL-c412t-a2eb7107ea318f19b22017d5ec65813d47559eae771b1b053544d39012250ffa3
IEDL.DBID RPM
ISSN 0305-1048
IngestDate Tue Sep 17 21:27:21 EDT 2024
Fri Aug 16 09:23:40 EDT 2024
Fri Aug 23 03:39:12 EDT 2024
Wed Oct 16 00:46:10 EDT 2024
Wed Aug 28 03:19:09 EDT 2024
IsDoiOpenAccess true
IsOpenAccess true
IsPeerReviewed true
IsScholarly true
Issue 4
Language English
License This is an Open Access article distributed under the terms of the Creative Commons Attribution Non-Commercial License (http://creativecommons.org/licenses/by-nc/4.0/), which permits non-commercial re-use, distribution, and reproduction in any medium, provided the original work is properly cited. For commercial re-use, please contact journals.permissions@oup.com
The Author(s) 2018. Published by Oxford University Press on behalf of Nucleic Acids Research.
LinkModel DirectLink
MergedId FETCHMERGED-LOGICAL-c412t-a2eb7107ea318f19b22017d5ec65813d47559eae771b1b053544d39012250ffa3
Notes ObjectType-Article-1
SourceType-Scholarly Journals-1
ObjectType-Feature-2
content type line 23
ORCID 0000-0002-0518-3489
OpenAccessLink https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6393314/
PMID 30576513
PQID 2159985349
PQPubID 23479
PageCount 16
ParticipantIDs pubmedcentral_primary_oai_pubmedcentral_nih_gov_6393314
proquest_miscellaneous_2159985349
crossref_primary_10_1093_nar_gky1261
pubmed_primary_30576513
oup_primary_10_1093_nar_gky1261
PublicationCentury 2000
PublicationDate 2019-02-28
PublicationDateYYYYMMDD 2019-02-28
PublicationDate_xml – month: 02
  year: 2019
  text: 2019-02-28
  day: 28
PublicationDecade 2010
PublicationPlace England
PublicationPlace_xml – name: England
PublicationTitle Nucleic acids research
PublicationTitleAlternate Nucleic Acids Res
PublicationYear 2019
Publisher Oxford University Press
Publisher_xml – name: Oxford University Press
References Kressler ( key 2019022722203684700_B1) 2017; 42
Huala ( key 2019022722203684700_B56) 2001; 29
Scaiola ( key 2019022722203684700_B15) 2018; 37
Simabuco ( key 2019022722203684700_B21) 2012; 11
Kalinina ( key 2019022722203684700_B35) 2018; 9
Zheng ( key 2019022722203684700_B82) 2017; 8
Du ( key 2019022722203684700_B93) 2016; 85
Sloan ( key 2019022722203684700_B5) 2017; 14
Cheng ( key 2019022722203684700_B8) 2017; 24
Sambrook ( key 2019022722203684700_B61) 2001
Linder ( key 2019022722203684700_B69) 2006; 125
Chen ( key 2019022722203684700_B81) 1983; 73
Borisjuk ( key 2019022722203684700_B95) 1998; 15
Boyes ( key 2019022722203684700_B62) 2001; 13
Belmonte ( key 2019022722203684700_B77) 2013; 110
Taffoureau ( key 2019022722203684700_B23) 2013; 51
Sigrist ( key 2019022722203684700_B53) 2013; 41
Teissere ( key 2019022722203684700_B79) 1975; 402
Ebersberger ( key 2019022722203684700_B18) 2014; 42
Heuer ( key 2019022722203684700_B11) 2017; 6
Abbasi ( key 2019022722203684700_B44) 2010; 64
Altenhoff ( key 2019022722203684700_B51) 2018; 46
Burlacu ( key 2019022722203684700_B7) 2017; 8
Birney ( key 2019022722203684700_B67) 1993; 21
Missbach ( key 2019022722203684700_B29) 2013; 8
Intine ( key 2019022722203684700_B68) 2003; 12
Sloan ( key 2019022722203684700_B22) 2014; 20
Ahn ( key 2019022722203684700_B40) 2016; 67
Hang ( key 2019022722203684700_B91) 2014; 111
Huang ( key 2019022722203684700_B32) 2018; 18
Mills ( key 2019022722203684700_B25) 2017; 358
Greber ( key 2019022722203684700_B10) 2016; 164
Hsu ( key 2019022722203684700_B96) 2014; 77
Shanmugam ( key 2019022722203684700_B45) 2017; 92
Sommer ( key 2019022722203684700_B57) 2011; 108
Kim ( key 2019022722203684700_B70) 2003; 28
Simm ( key 2019022722203684700_B19) 2015; 9
Sprunck ( key 2019022722203684700_B63) 2012; 338
Kruszka ( key 2019022722203684700_B89) 2003; 22
Kojima ( key 2019022722203684700_B43) 2018; 8
Jeon ( key 2019022722203684700_B41) 2015; 66
Takeno ( key 2019022722203684700_B94) 2016; 67
Sarkar ( key 2019022722203684700_B14) 2017; 24
Sonnhammer ( key 2019022722203684700_B49) 2015; 43
Chomczynski ( key 2019022722203684700_B60) 1987; 162
Weis ( key 2019022722203684700_B42) 2014; 80
Green ( key 2019022722203684700_B71) 2003; 11
Leeds ( key 2019022722203684700_B86) 2006; 26
Nicolas ( key 2019022722203684700_B28) 2016; 7
Finn ( key 2019022722203684700_B52) 2016; 44
Weis ( key 2019022722203684700_B2) 2015; 20
Pendle ( key 2019022722203684700_B46) 2005; 16
Chaker-Margot ( key 2019022722203684700_B9) 2017; 355
Huang ( key 2019022722203684700_B38) 2016; 57
Ponting ( key 2019022722203684700_B73) 2002; 30
Schwacke ( key 2019022722203684700_B55) 2003; 131
Rook ( key 2019022722203684700_B97) 2006; 29
Munns ( key 2019022722203684700_B98) 2008; 59
Hakimi ( key 2019022722203684700_B64) 2014; 113
Aravind ( key 2019022722203684700_B66) 2003; 4
Li ( key 2019022722203684700_B48) 2003; 13
Goldberg ( key 2019022722203684700_B78) 1994; 266
Montacié ( key 2019022722203684700_B47) 2017; 8
Gerhardy ( key 2019022722203684700_B85) 2014; 123
Edwards ( key 2019022722203684700_B58) 1991; 19
Beta ( key 2019022722203684700_B83) 2018
Fleurdépine ( key 2019022722203684700_B87) 2007; 35
Ramakrishnan ( key 2019022722203684700_B65) 1993; 362
Konikkat ( key 2019022722203684700_B4) 2017; 474
Rosado ( key 2019022722203684700_B37) 2010; 22
Palm ( key 2019022722203684700_B24) 2016; 13
Weis ( key 2019022722203684700_B36) 2015; 21
Okanami ( key 2019022722203684700_B92) 1998; 26
Kosová ( key 2019022722203684700_B99) 2011; 74
Martin ( key 2019022722203684700_B84) 2002; 128
Zhao ( key 2019022722203684700_B31) 2015; 66
Aravind ( key 2019022722203684700_B75) 2001; 26
Neelamraju ( key 2019022722203684700_B26) 2015; 127
Larburu ( key 2019022722203684700_B20) 2016; 44
Schuller ( key 2019022722203684700_B16) 2018; 360
Szakonyi ( key 2019022722203684700_B39) 2011; 65
Yip ( key 2019022722203684700_B17) 2013; 2013
Cui ( key 2019022722203684700_B88) 2015; 38
Winter ( key 2019022722203684700_B76) 2007; 2
Goodstein ( key 2019022722203684700_B50) 2012; 40
Johnson ( key 2019022722203684700_B12) 2017; 25
Hunt ( key 2019022722203684700_B74) 2008; 9
Lafontaine ( key 2019022722203684700_B6) 2015; 22
Zakrzewska-Placzek ( key 2019022722203684700_B30) 2010; 38
Finn ( key 2019022722203684700_B54) 2011; 39
Kornprobst ( key 2019022722203684700_B13) 2016; 166
Yang ( key 2019022722203684700_B72) 2004; 279
Uhrig ( key 2019022722203684700_B90) 2004; 135
Henras ( key 2019022722203684700_B3) 2008; 65
Maekawa ( key 2019022722203684700_B27) 2018; 30
Guilfoyle ( key 2019022722203684700_B80) 1975; 72
Thole ( key 2019022722203684700_B59) 2009; 4
Kojima ( key 2019022722203684700_B34) 2007; 49
Ishida ( key 2019022722203684700_B33) 2016; 9
References_xml – volume: 65
  start-page: 2334
  year: 2008
  ident: key 2019022722203684700_B3
  article-title: The post-transcriptional steps of eukaryotic ribosome biogenesis
  publication-title: Cell Mol. Life Sci.
  doi: 10.1007/s00018-008-8027-0
  contributor:
    fullname: Henras
– volume: 13
  start-page: 2178
  year: 2003
  ident: key 2019022722203684700_B48
  article-title: OrthoMCL: identification of ortholog groups for eukaryotic genomes
  publication-title: Genome Res.
  doi: 10.1101/gr.1224503
  contributor:
    fullname: Li
– volume: 13
  start-page: 1499
  year: 2001
  ident: key 2019022722203684700_B62
  article-title: Growth stage-based phenotypic analysis of Arabidopsis: a model for high throughput functional genomics in plants
  publication-title: Plant Cell
  doi: 10.1105/tpc.13.7.1499
  contributor:
    fullname: Boyes
– volume: 125
  start-page: 219
  year: 2006
  ident: key 2019022722203684700_B69
  article-title: Bent out of shape: RNA unwinding by the DEAD-box helicase Vasa
  publication-title: Cell
  doi: 10.1016/j.cell.2006.03.030
  contributor:
    fullname: Linder
– volume: 7
  start-page: 11390
  year: 2016
  ident: key 2019022722203684700_B28
  article-title: Involvement of human ribosomal proteins in nucleolar structure and p53-dependent nucleolar stress
  publication-title: Nat. Commun.
  doi: 10.1038/ncomms11390
  contributor:
    fullname: Nicolas
– volume: 42
  start-page: 1509
  year: 2014
  ident: key 2019022722203684700_B18
  article-title: The evolution of the ribosome biogenesis pathway from a yeast perspective
  publication-title: Nucleic. Acids. Res.
  doi: 10.1093/nar/gkt1137
  contributor:
    fullname: Ebersberger
– volume: 123
  start-page: 327
  year: 2014
  ident: key 2019022722203684700_B85
  article-title: Assembly and nuclear export of pre-ribosomal particles in budding yeast
  publication-title: Chromosoma
  doi: 10.1007/s00412-014-0463-z
  contributor:
    fullname: Gerhardy
– volume: 66
  start-page: 6863
  year: 2015
  ident: key 2019022722203684700_B31
  article-title: The Arabidopsis gene DIG6 encodes a large 60S subunit nuclear export GTPase 1 that is involved in ribosome biogenesis and affects multiple auxin-regulated development processes
  publication-title: J. Exp. Bot.
  doi: 10.1093/jxb/erv391
  contributor:
    fullname: Zhao
– volume: 73
  start-page: 746
  year: 1983
  ident: key 2019022722203684700_B81
  article-title: Fractionation of nucleoli from auxin-treated soybean hypocotyl into nucleolar chromatin and preribosomal particles
  publication-title: Plant Physiol.
  doi: 10.1104/pp.73.3.746
  contributor:
    fullname: Chen
– volume: 111
  start-page: 16190
  year: 2014
  ident: key 2019022722203684700_B91
  article-title: Arabidopsis protein arginine methyltransferase 3 is required for ribosome biogenesis by affecting precursor ribosomal RNA processing
  publication-title: Proc. Natl. Acad. Sci. U.S.A.
  doi: 10.1073/pnas.1412697111
  contributor:
    fullname: Hang
– volume: 279
  start-page: 6401
  year: 2004
  ident: key 2019022722203684700_B72
  article-title: Purification of the Arabidopsis 26S proteasome: biochemical and molecular analyses revealed the presence of multiple isoforms
  publication-title: J. Biol. Chem.
  doi: 10.1074/jbc.M311977200
  contributor:
    fullname: Yang
– volume: 65
  start-page: 269
  year: 2011
  ident: key 2019022722203684700_B39
  article-title: Ribosomal protein L27a is required for growth and patterning in Arabidopsis thaliana
  publication-title: Plant J.
  doi: 10.1111/j.1365-313X.2010.04422.x
  contributor:
    fullname: Szakonyi
– volume: 21
  start-page: 5803
  year: 1993
  ident: key 2019022722203684700_B67
  article-title: Analysis of the RNA-recognition motif and RS and RGG domains: conservation in metazoan pre-mRNA splicing factors
  publication-title: Nucleic Acids Res.
  doi: 10.1093/nar/21.25.5803
  contributor:
    fullname: Birney
– volume: 38
  start-page: 2098
  year: 2015
  ident: key 2019022722203684700_B88
  article-title: AtLa1 protein initiates IRES-dependent translation of WUSCHEL mRNA and regulates the stem cell homeostasis of Arabidopsis in response to environmental hazards
  publication-title: Plant Cell Environ.
  doi: 10.1111/pce.12535
  contributor:
    fullname: Cui
– volume: 474
  start-page: 195
  year: 2017
  ident: key 2019022722203684700_B4
  article-title: Principles of 60S ribosomal subunit assembly emerging from recent studies in yeast
  publication-title: Biochem. J.
  doi: 10.1042/BCJ20160516
  contributor:
    fullname: Konikkat
– volume: 8
  start-page: e54084
  year: 2013
  ident: key 2019022722203684700_B29
  article-title: 40S ribosome biogenesis co-factors are essential for gametophyte and embryo development
  publication-title: PLoS One
  doi: 10.1371/journal.pone.0054084
  contributor:
    fullname: Missbach
– volume: 9
  start-page: 312
  year: 2016
  ident: key 2019022722203684700_B33
  article-title: The pre-rRNA processing complex in Arabidopsis includes two WD40-domain-containing proteins encoded by glucose-inducible genes and plant-specific proteins
  publication-title: Mol. Plant
  doi: 10.1016/j.molp.2015.11.003
  contributor:
    fullname: Ishida
– volume: 24
  start-page: 954
  year: 2017
  ident: key 2019022722203684700_B8
  article-title: 3.2-Å-resolution structure of the 90S preribosome before A1 pre-rRNA cleavage
  publication-title: Nat. Struct. Mol. Biol.
  doi: 10.1038/nsmb.3476
  contributor:
    fullname: Cheng
– volume: 66
  start-page: 6297
  year: 2015
  ident: key 2019022722203684700_B41
  article-title: The nucleolar GTPase nucleostemin-like 1 plays a role in plant growth and senescence by modulating ribosome biogenesis
  publication-title: J. Exp. Bot.
  doi: 10.1093/jxb/erv337
  contributor:
    fullname: Jeon
– volume-title: Molecular Cloning: A Laboratory Manual
  year: 2001
  ident: key 2019022722203684700_B61
  contributor:
    fullname: Sambrook
– volume: 67
  start-page: 4925
  year: 2016
  ident: key 2019022722203684700_B94
  article-title: Stress-induced flowering: the third category of flowering response
  publication-title: J. Exp. Bot.
  doi: 10.1093/jxb/erw272
  contributor:
    fullname: Takeno
– volume: 41
  start-page: D344
  year: 2013
  ident: key 2019022722203684700_B53
  article-title: New and continuing developments at PROSITE
  publication-title: Nucleic. Acids. Res.
  doi: 10.1093/nar/gks1067
  contributor:
    fullname: Sigrist
– volume: 6
  start-page: e30189
  year: 2017
  ident: key 2019022722203684700_B11
  article-title: Cryo-EM structure of a late pre-40S ribosomal subunit from Saccharomyces cerevisiae
  publication-title: Elife
  doi: 10.7554/eLife.30189
  contributor:
    fullname: Heuer
– volume: 44
  start-page: 8465
  year: 2016
  ident: key 2019022722203684700_B20
  article-title: Structure of a human pre-40S particle points to a role for RACK1 in the final steps of 18S rRNA processing
  publication-title: Nucleic Acids Res.
  doi: 10.1093/nar/gkw714
  contributor:
    fullname: Larburu
– volume: 29
  start-page: 102
  year: 2001
  ident: key 2019022722203684700_B56
  article-title: The Arabidopsis Information Resource (TAIR): a comprehensive database and web-based information retrieval, analysis, and visualization system for a model plant
  publication-title: Nucleic. Acids. Res.
  doi: 10.1093/nar/29.1.102
  contributor:
    fullname: Huala
– volume: 14
  start-page: 1138
  year: 2017
  ident: key 2019022722203684700_B5
  article-title: Tuning the ribosome: The influence of rRNA modification on eukaryotic ribosome biogenesis and function
  publication-title: RNA Biol.
  doi: 10.1080/15476286.2016.1259781
  contributor:
    fullname: Sloan
– volume: 38
  start-page: 4487
  year: 2010
  ident: key 2019022722203684700_B30
  article-title: Arabidopsis thaliana XRN2 is required for primary cleavage in the pre-ribosomal RNA
  publication-title: Nucleic Acids Res.
  doi: 10.1093/nar/gkq172
  contributor:
    fullname: Zakrzewska-Placzek
– volume: 30
  start-page: 209
  year: 2018
  ident: key 2019022722203684700_B27
  article-title: Reduced expression of APUM24, encoding a novel rRNA processing factor, induces sugar-dependent nucleolar stress and altered sugar responses in Arabidopsis thaliana
  publication-title: Plant Cell
  doi: 10.1105/tpc.17.00778
  contributor:
    fullname: Maekawa
– volume: 135
  start-page: 2411
  year: 2004
  ident: key 2019022722203684700_B90
  article-title: Relocalization of nuclear ALY proteins to the cytoplasm by the tomato bushy stunt virus P19 pathogenicity protein
  publication-title: Plant Physiol.
  doi: 10.1104/pp.104.046086
  contributor:
    fullname: Uhrig
– volume: 4
  start-page: R64
  year: 2003
  ident: key 2019022722203684700_B66
  article-title: The two faces of Alba: the evolutionary connection between proteins participating in chromatin structure and RNA metabolism
  publication-title: Genome Biol.
  doi: 10.1186/gb-2003-4-10-r64
  contributor:
    fullname: Aravind
– volume: 26
  start-page: 513
  year: 2006
  ident: key 2019022722203684700_B86
  article-title: The splicing factor Prp43p, a DEAH box ATPase, functions in ribosome biogenesis
  publication-title: Mol. Cell Biol.
  doi: 10.1128/MCB.26.2.513-522.2006
  contributor:
    fullname: Leeds
– volume: 355
  start-page: eaal1880
  year: 2017
  ident: key 2019022722203684700_B9
  article-title: Architecture of the yeast small subunit processome
  publication-title: Science
  doi: 10.1126/science.aal1880
  contributor:
    fullname: Chaker-Margot
– volume: 11
  start-page: 1537
  year: 2003
  ident: key 2019022722203684700_B71
  article-title: RNA recognition via the SAM domain of Smaug
  publication-title: Mol. Cell
  doi: 10.1016/S1097-2765(03)00178-3
  contributor:
    fullname: Green
– volume: 9
  start-page: 132
  year: 2018
  ident: key 2019022722203684700_B35
  article-title: The multiple functions of the nucleolus in plant development, disease and stress responses
  publication-title: Front. Plant Sci.
  doi: 10.3389/fpls.2018.00132
  contributor:
    fullname: Kalinina
– volume: 46
  start-page: D477
  year: 2018
  ident: key 2019022722203684700_B51
  article-title: The OMA orthology database in 2018: retrieving evolutionary relationships among all domains of life through richer web and programmatic interfaces
  publication-title: Nucleic Acids Res.
  doi: 10.1093/nar/gkx1019
  contributor:
    fullname: Altenhoff
– volume: 74
  start-page: 1301
  year: 2011
  ident: key 2019022722203684700_B99
  article-title: Plant proteome changes under abiotic stress–contribution of proteomics studies to understanding plant stress response
  publication-title: J. Proteomics.
  doi: 10.1016/j.jprot.2011.02.006
  contributor:
    fullname: Kosová
– volume: 110
  start-page: E435
  year: 2013
  ident: key 2019022722203684700_B77
  article-title: Comprehensive developmental profiles of gene activity in regions and subregions of the Arabidopsis seed
  publication-title: Proc. Natl. Acad. Sci U.S.A.
  doi: 10.1073/pnas.1222061110
  contributor:
    fullname: Belmonte
– volume: 49
  start-page: 1053
  year: 2007
  ident: key 2019022722203684700_B34
  article-title: Sugar-inducible expression of the nucleolin-1 gene of Arabidopsis thaliana and its role in ribosome synthesis, growth and development
  publication-title: Plant J.
  doi: 10.1111/j.1365-313X.2006.03016.x
  contributor:
    fullname: Kojima
– volume: 59
  start-page: 651
  year: 2008
  ident: key 2019022722203684700_B98
  article-title: Mechanisms of salinity tolerance
  publication-title: Ann. Rev. Plant Biol.
  doi: 10.1146/annurev.arplant.59.032607.092911
  contributor:
    fullname: Munns
– volume: 22
  start-page: 11
  year: 2015
  ident: key 2019022722203684700_B6
  article-title: Noncoding RNAs in eukaryotic ribosome biogenesis and function
  publication-title: Nat. Struct. Mol. Biol.
  doi: 10.1038/nsmb.2939
  contributor:
    fullname: Lafontaine
– volume: 80
  start-page: 1043
  year: 2014
  ident: key 2019022722203684700_B42
  article-title: The 60S associated ribosome biogenesis factor LSG1-2 is required for 40S maturation in Arabidopsis thaliana
  publication-title: Plant J.
  doi: 10.1111/tpj.12703
  contributor:
    fullname: Weis
– volume: 13
  start-page: 441
  year: 2016
  ident: key 2019022722203684700_B24
  article-title: Proteome distribution between nucleoplasm and nucleolus and its relation to ribosome biogenesis in Arabidopsis thaliana
  publication-title: RNA Biol
  doi: 10.1080/15476286.2016.1154252
  contributor:
    fullname: Palm
– volume: 9
  start-page: 1
  year: 2015
  ident: key 2019022722203684700_B19
  article-title: Identification and expression analysis of ribosome biogenesis factor co-orthologs in Solanum lycopersicum
  publication-title: Bioinform. Biol. Insights
  doi: 10.4137/BBI.S20751
  contributor:
    fullname: Simm
– volume: 44
  start-page: D279
  year: 2016
  ident: key 2019022722203684700_B52
  article-title: The Pfam protein families database: towards a more sustainable future
  publication-title: Nucleic Acids Res.
  doi: 10.1093/nar/gkv1344
  contributor:
    fullname: Finn
– volume: 402
  start-page: 391
  year: 1975
  ident: key 2019022722203684700_B79
  article-title: Hormonal control of transcription in higher plants
  publication-title: Biochim. Biophys. Acta
  doi: 10.1016/0005-2787(75)90274-9
  contributor:
    fullname: Teissere
– volume: 26
  start-page: 215
  year: 2001
  ident: key 2019022722203684700_B75
  article-title: THUMP–a predicted RNA-binding domain shared by 4-thiouridine, pseudouridine synthases and RNA methylases
  publication-title: Trends Biochem. Sci.
  doi: 10.1016/S0968-0004(01)01826-6
  contributor:
    fullname: Aravind
– volume: 42
  start-page: 640
  year: 2017
  ident: key 2019022722203684700_B1
  article-title: A puzzle of life: crafting ribosomal subunits
  publication-title: Trends Biochem. Sci.
  doi: 10.1016/j.tibs.2017.05.005
  contributor:
    fullname: Kressler
– volume: 338
  start-page: 1093
  year: 2012
  ident: key 2019022722203684700_B63
  article-title: Egg cell–secreted EC1 triggers sperm cell activation during double fertilization
  publication-title: Science
  doi: 10.1126/science.1223944
  contributor:
    fullname: Sprunck
– volume: 12
  start-page: 1301
  year: 2003
  ident: key 2019022722203684700_B68
  article-title: Differential phosphorylation and subcellular localization of La RNPs associated with precursor tRNAs and translation-related mRNAs
  publication-title: Mol. Cell
  doi: 10.1016/S1097-2765(03)00429-5
  contributor:
    fullname: Intine
– volume: 8
  start-page: 714
  year: 2017
  ident: key 2019022722203684700_B7
  article-title: High-throughput RNA structure probing reveals critical folding events during early 60S ribosome assembly in yeast
  publication-title: Nat. Commun.
  doi: 10.1038/s41467-017-00761-8
  contributor:
    fullname: Burlacu
– volume: 72
  start-page: 69
  year: 1975
  ident: key 2019022722203684700_B80
  article-title: Enhancement of soybean RNA polymerase I by auxin
  publication-title: Proc. Natl. Acad. Sci. U.S.A.
  doi: 10.1073/pnas.72.1.69
  contributor:
    fullname: Guilfoyle
– volume: 360
  start-page: 219
  year: 2018
  ident: key 2019022722203684700_B16
  article-title: Structure of the nuclear exosome captured on a maturing preribosome
  publication-title: Science
  doi: 10.1126/science.aar5428
  contributor:
    fullname: Schuller
– volume: 18
  start-page: 40
  year: 2018
  ident: key 2019022722203684700_B32
  article-title: Salt hypersensitive mutant 9, a nucleolar APUM23 protein, is essential for salt sensitivity in association with the ABA signaling pathway in Arabidopsis
  publication-title: BMC Plant Biol.
  doi: 10.1186/s12870-018-1255-z
  contributor:
    fullname: Huang
– volume: 51
  start-page: 539
  year: 2013
  ident: key 2019022722203684700_B23
  article-title: The complexity of human ribosome biogenesis revealed by systematic nucleolar screening of pre-rRNA processing factors
  publication-title: Mol. Cell
  doi: 10.1016/j.molcel.2013.08.011
  contributor:
    fullname: Taffoureau
– volume: 35
  start-page: 3306
  year: 2007
  ident: key 2019022722203684700_B87
  article-title: A bona fide La protein is required for embryogenesis in Arabidopsis thaliana
  publication-title: Nucleic Acids Res.
  doi: 10.1093/nar/gkm200
  contributor:
    fullname: Fleurdépine
– volume: 64
  start-page: 960
  year: 2010
  ident: key 2019022722203684700_B44
  article-title: APUM23, a nucleolar Puf domain protein, is involved in pre-ribosomal RNA processing and normal growth patterning in Arabidopsis
  publication-title: Plant J.
  doi: 10.1111/j.1365-313X.2010.04393.x
  contributor:
    fullname: Abbasi
– volume: 24
  start-page: 1107
  year: 2017
  ident: key 2019022722203684700_B14
  article-title: Preribosomes escaping from the nucleus are caught during translation by cytoplasmic quality control
  publication-title: Nat. Struct. Mol. Biol.
  doi: 10.1038/nsmb.3495
  contributor:
    fullname: Sarkar
– volume: 8
  start-page: 2240
  year: 2018
  ident: key 2019022722203684700_B43
  article-title: Two nucleolar proteins, GDP1 and OLI2, function as ribosome biogenesis factors and are preferentially involved in promotion of leaf cell proliferation without strongly affecting leaf adaxial-abaxial patterning in Arabidopsis thaliana
  publication-title: Front Plant Sci.
  doi: 10.3389/fpls.2017.02240
  contributor:
    fullname: Kojima
– volume: 40
  start-page: D1178
  year: 2012
  ident: key 2019022722203684700_B50
  article-title: Phytozome: a comparative platform for green plant genomics
  publication-title: Nucleic. Acids. Res.
  doi: 10.1093/nar/gkr944
  contributor:
    fullname: Goodstein
– volume: 19
  start-page: 1349
  year: 1991
  ident: key 2019022722203684700_B58
  article-title: A simple and rapid method for the preparation of plant genomic DNA for PCR analysis
  publication-title: Nucleic Acids Res.
  doi: 10.1093/nar/19.6.1349
  contributor:
    fullname: Edwards
– volume: 28
  start-page: 625
  year: 2003
  ident: key 2019022722203684700_B70
  article-title: SAM domains: uniform structure, diversity of function
  publication-title: Trends Biochem. Sci.
  doi: 10.1016/j.tibs.2003.11.001
  contributor:
    fullname: Kim
– volume: 266
  start-page: 605
  year: 1994
  ident: key 2019022722203684700_B78
  article-title: Plant embryogenesis: zygote to seed
  publication-title: Science
  doi: 10.1126/science.266.5185.605
  contributor:
    fullname: Goldberg
– volume: 57
  start-page: 1741
  year: 2016
  ident: key 2019022722203684700_B38
  article-title: The DEAD-Box RNA helicase AtRH7/PRH75 Participates in Pre-rRNA Processing, plant development and cold tolerance in Arabidopsis
  publication-title: Plant Cell Physiol.
  doi: 10.1093/pcp/pcv188
  contributor:
    fullname: Huang
– volume: 37
  start-page: e98499
  year: 2018
  ident: key 2019022722203684700_B15
  article-title: Structure of a eukaryotic cytoplasmic pre-40S ribosomal subunit
  publication-title: EMBO J.
  doi: 10.15252/embj.201798499
  contributor:
    fullname: Scaiola
– volume: 11
  start-page: 3112
  year: 2012
  ident: key 2019022722203684700_B21
  article-title: Proteomic characterization of the human FTSJ3 preribosomal complexes
  publication-title: J. Proteome Res.
  doi: 10.1021/pr201106n
  contributor:
    fullname: Simabuco
– volume: 21
  start-page: 1
  year: 2015
  ident: key 2019022722203684700_B36
  article-title: atBRX1-1 and atBRX1-2 are involved in an alternative rRNA processing pathway in Arabidopsis thaliana
  publication-title: RNA
  doi: 10.1261/rna.047563.114
  contributor:
    fullname: Weis
– volume: 8
  start-page: 1813
  year: 2017
  ident: key 2019022722203684700_B82
  article-title: Involvement of PACLOBUTRAZOL RESISTANCE6/KIDARI, an atypical bHLH transcription factor, in auxin responses in Arabidopsis
  publication-title: Front. Plant Sci.
  doi: 10.3389/fpls.2017.01813
  contributor:
    fullname: Zheng
– volume: 92
  start-page: 1092
  year: 2017
  ident: key 2019022722203684700_B45
  article-title: An Arabidopsis divergent pumilio protein, APUM24, is essential for embryogenesis and required for faithful pre-rRNA processing
  publication-title: Plant J.
  doi: 10.1111/tpj.13745
  contributor:
    fullname: Shanmugam
– volume: 85
  start-page: 520
  year: 2016
  ident: key 2019022722203684700_B93
  article-title: Nucleocytoplasmic trafficking is essential for BAK1- and BKK1-mediated cell-death control
  publication-title: Plant J.
  doi: 10.1111/tpj.13125
  contributor:
    fullname: Du
– volume: 128
  start-page: 472
  year: 2002
  ident: key 2019022722203684700_B84
  article-title: Arabidopsis seedling growth, storage lipid mobilization, and photosynthetic gene expression are regulated by carbon:nitrogen availability
  publication-title: Plant Physiol.
  doi: 10.1104/pp.010475
  contributor:
    fullname: Martin
– volume: 127
  start-page: 61
  year: 2015
  ident: key 2019022722203684700_B26
  article-title: The human RBPome: from genes and proteins to human disease
  publication-title: J. Proteomics
  doi: 10.1016/j.jprot.2015.04.031
  contributor:
    fullname: Neelamraju
– volume: 2
  start-page: e718
  year: 2007
  ident: key 2019022722203684700_B76
  article-title: An “Electronic Fluorescent Pictograph” browser for exploring and analyzing large-scale biological data sets
  publication-title: PLoS One
  doi: 10.1371/journal.pone.0000718
  contributor:
    fullname: Winter
– start-page: e1484
  year: 2018
  ident: key 2019022722203684700_B83
  article-title: Tales around the clock: Poly(A) tails in circadian gene expression
  publication-title: Wiley Interdiscip. Rev. RNA.
  doi: 10.1002/wrna.1484
  contributor:
    fullname: Beta
– volume: 16
  start-page: 260
  year: 2005
  ident: key 2019022722203684700_B46
  article-title: Proteomic analysis of the Arabidopsis nucleolus suggests novel nucleolar functions
  publication-title: Mol. Biol. Cell.
  doi: 10.1091/mbc.e04-09-0791
  contributor:
    fullname: Pendle
– volume: 26
  start-page: 2638
  year: 1998
  ident: key 2019022722203684700_B92
  article-title: Characterization of a DEAD box ATPase/RNA helicase protein of Arabidopsis thaliana
  publication-title: Nucleic Acids Res.
  doi: 10.1093/nar/26.11.2638
  contributor:
    fullname: Okanami
– volume: 15
  start-page: 583
  year: 1998
  ident: key 2019022722203684700_B95
  article-title: High‐resolution histographical mapping of glucose concentrations in developing cotyledons of Vicia faba in relation to mitotic activity and storage processes: glucose as a possible developmental trigger
  publication-title: Plant J.
  doi: 10.1046/j.1365-313X.1998.00214.x
  contributor:
    fullname: Borisjuk
– volume: 362
  start-page: 219
  year: 1993
  ident: key 2019022722203684700_B65
  article-title: Crystal structure of globular domain of histone H5 and its implications for nucleosome binding
  publication-title: Nature
  doi: 10.1038/362219a0
  contributor:
    fullname: Ramakrishnan
– volume: 4
  start-page: 650
  year: 2009
  ident: key 2019022722203684700_B59
  article-title: A protocol for efficiently retrieving and characterizing flanking sequence tags (FSTs) in Brachypodium distachyon T-DNA insertional mutants
  publication-title: Nat. Protoc.
  doi: 10.1038/nprot.2009.32
  contributor:
    fullname: Thole
– volume: 162
  start-page: 156
  year: 1987
  ident: key 2019022722203684700_B60
  article-title: Single-step method of RNA isolation by acid guanidinium thiocyanate-phenol-chloroform extraction
  publication-title: Anal. Biochem.
  doi: 10.1016/0003-2697(87)90021-2
  contributor:
    fullname: Chomczynski
– volume: 9
  start-page: 220
  year: 2008
  ident: key 2019022722203684700_B74
  article-title: Arabidopsis mRNA polyadenylation machinery: comprehensive analysis of protein-protein interactions and gene expression profiling
  publication-title: BMC Genomics
  doi: 10.1186/1471-2164-9-220
  contributor:
    fullname: Hunt
– volume: 77
  start-page: 119
  year: 2014
  ident: key 2019022722203684700_B96
  article-title: AtRH57, a DEAD-box RNA helicase, is involved in feedback inhibition of glucose-mediated abscisic acid accumulation during seedling development and additively affects pre-ribosomal RNA processing with high glucose
  publication-title: Plant J.
  doi: 10.1111/tpj.12371
  contributor:
    fullname: Hsu
– volume: 164
  start-page: 91
  year: 2016
  ident: key 2019022722203684700_B10
  article-title: Insertion of the biogenesis factor Rei1 probes the ribosomal tunnel during 60S maturation
  publication-title: Cell
  doi: 10.1016/j.cell.2015.11.027
  contributor:
    fullname: Greber
– volume: 22
  start-page: 143
  year: 2010
  ident: key 2019022722203684700_B37
  article-title: Auxin-mediated ribosomal biogenesis regulates vacuolar trafficking in Arabidopsis
  publication-title: Plant Cell
  doi: 10.1105/tpc.109.068320
  contributor:
    fullname: Rosado
– volume: 20
  start-page: 540
  year: 2014
  ident: key 2019022722203684700_B22
  article-title: The roles of SSU processome components and surveillance factors in the initial processing of human ribosomal RNA
  publication-title: RNA
  doi: 10.1261/rna.043471.113
  contributor:
    fullname: Sloan
– volume: 43
  start-page: D234
  year: 2015
  ident: key 2019022722203684700_B49
  article-title: InParanoid 8: orthology analysis between 273 proteomes, mostly eukaryotic
  publication-title: Nucleic Acids Res.
  doi: 10.1093/nar/gku1203
  contributor:
    fullname: Sonnhammer
– volume: 29
  start-page: 426
  year: 2006
  ident: key 2019022722203684700_B97
  article-title: Sugar and ABA response pathways and the control of gene expression
  publication-title: Plant Cell Environ.
  doi: 10.1111/j.1365-3040.2005.01477.x
  contributor:
    fullname: Rook
– volume: 2013
  start-page: 614735
  year: 2013
  ident: key 2019022722203684700_B17
  article-title: Ribonucleoproteins in archaeal pre-rRNA processing and modification
  publication-title: Archaea
  doi: 10.1155/2013/614735
  contributor:
    fullname: Yip
– volume: 113
  start-page: 3957
  year: 2014
  ident: key 2019022722203684700_B64
  article-title: Plasmodium knowlesi thioredoxin peroxidase 1 binds to nucleic acids and has RNA chaperone activity
  publication-title: Parasitol. Res.
  doi: 10.1007/s00436-014-4060-0
  contributor:
    fullname: Hakimi
– volume: 358
  start-page: eaan2755
  year: 2017
  ident: key 2019022722203684700_B25
  article-title: Ribosomopathies: There's strength in numbers
  publication-title: Science
  doi: 10.1126/science.aan2755
  contributor:
    fullname: Mills
– volume: 108
  start-page: 13841
  year: 2011
  ident: key 2019022722203684700_B57
  article-title: Chloroplast Omp85 proteins change orientation during evolution
  publication-title: Proc. Natl. Acad. Sci. U.S.A.
  doi: 10.1073/pnas.1108626108
  contributor:
    fullname: Sommer
– volume: 67
  start-page: 5217
  year: 2016
  ident: key 2019022722203684700_B40
  article-title: Functional characterization of the ribosome biogenesis factors PES, BOP1, and WDR12 (PeBoW), and mechanisms of defective cell growth and proliferation caused by PeBoW deficiency in Arabidopsis
  publication-title: J. Exp. Bot.
  doi: 10.1093/jxb/erw288
  contributor:
    fullname: Ahn
– volume: 22
  start-page: 621
  year: 2003
  ident: key 2019022722203684700_B89
  article-title: Plant dicistronic tRNA-snoRNA genes: a new mode of expression of the small nucleolar RNAs processed by RNase Z
  publication-title: EMBO J.
  doi: 10.1093/emboj/cdg040
  contributor:
    fullname: Kruszka
– volume: 166
  start-page: 380
  year: 2016
  ident: key 2019022722203684700_B13
  article-title: Architecture of the 90S pre-ribosome: A structural view on the birth of the eukaryotic ribosome
  publication-title: Cell
  doi: 10.1016/j.cell.2016.06.014
  contributor:
    fullname: Kornprobst
– volume: 39
  start-page: W29
  year: 2011
  ident: key 2019022722203684700_B54
  article-title: HMMER web server: interactive sequence similarity searching
  publication-title: Nucleic Acids Res.
  doi: 10.1093/nar/gkr367
  contributor:
    fullname: Finn
– volume: 25
  start-page: 329
  year: 2017
  ident: key 2019022722203684700_B12
  article-title: Structural heterogeneity in pre-40S ribosomes
  publication-title: Structure
  doi: 10.1016/j.str.2016.12.011
  contributor:
    fullname: Johnson
– volume: 20
  start-page: 729
  year: 2015
  ident: key 2019022722203684700_B2
  article-title: Plant-specific features of ribosome biogenesis
  publication-title: Trends Plant Sci.
  doi: 10.1016/j.tplants.2015.07.003
  contributor:
    fullname: Weis
– volume: 30
  start-page: 3643
  year: 2002
  ident: key 2019022722203684700_B73
  article-title: Novel domains and orthologues of eukaryotic transcription elongation factors
  publication-title: Nucleic Acids Res.
  doi: 10.1093/nar/gkf498
  contributor:
    fullname: Ponting
– volume: 8
  start-page: 1815
  year: 2017
  ident: key 2019022722203684700_B47
  article-title: Nucleolar proteome analysis and proteasomal activity assays reveal a link between nucleolus and 26S Proteasome in A. thaliana
  publication-title: Front. Plant Sci.
  doi: 10.3389/fpls.2017.01815
  contributor:
    fullname: Montacié
– volume: 131
  start-page: 16
  year: 2003
  ident: key 2019022722203684700_B55
  article-title: ARAMEMNON, a novel database for Arabidopsis integral membrane proteins
  publication-title: Plant Physiol.
  doi: 10.1104/pp.011577
  contributor:
    fullname: Schwacke
SSID ssj0014154
Score 2.510466
Snippet Abstract rRNA processing and assembly of ribosomal proteins during maturation of ribosomes involve many ribosome biogenesis factors (RBFs). Recent studies...
rRNA processing and assembly of ribosomal proteins during maturation of ribosomes involve many ribosome biogenesis factors (RBFs). Recent studies identified...
SourceID pubmedcentral
proquest
crossref
pubmed
oup
SourceType Open Access Repository
Aggregation Database
Index Database
Publisher
StartPage 1880
SubjectTerms Arabidopsis - genetics
Arabidopsis Proteins - genetics
DNA, Bacterial - genetics
Gene Expression Regulation, Plant - genetics
Molecular Biology
Nuclear Proteins - genetics
Ribosomal Proteins - genetics
Ribosomes - genetics
RNA Precursors - genetics
RNA Processing, Post-Transcriptional - genetics
RNA, Ribosomal - genetics
Title Plant-specific ribosome biogenesis factors in Arabidopsis thaliana with essential function in rRNA processing
URI https://www.ncbi.nlm.nih.gov/pubmed/30576513
https://search.proquest.com/docview/2159985349
https://pubmed.ncbi.nlm.nih.gov/PMC6393314
Volume 47
hasFullText 1
inHoldings 1
isFullTextHit
isPrint
link http://utb.summon.serialssolutions.com/2.0.0/link/0/eLvHCXMwnV1LT9wwEB4Bh5YL4tGW5elKqLeQdWyvyXG1AiEkaFWBtLfIdhyI2Dir3XDg3zN2EsT20AOXHJJxFPlzPA_PfANwxlRiRGrySA15EfGkMJFSnEaJMcM0yS3nhS9wvr0bXT_wm6mYroHoa2FC0r7R5bmbVeeufAq5lfPKxH2eWPzndoJalTHK43VYl4z1Lnp3dIAaqeWMChSb_KIrykPPPXZqET8-v1L0GjbhCwrIkaBsRSOtVLl9MDb_zZn8oISutmGrsx7JuP3KHVizbhf2xg495-qV_CIhnzMEynfh66Tv5bYHle9N1ES-rNKnBpFFqetlXVmiy_rR73blknSdd0jp8P1Kl3k997ebpxAJUcRHbIlnGne4KcyIV4geVC-_-Hs3JvO25ABV4Td4uLq8n1xHXaOFyHCaNJFKrEZLQ1qFf3hBU52gWSBzYQ3aJ5TlXKLfYZWVkmqqPSMM57kPluBmMCwKxb7Dhqud3QciVJHYixwHiZSn0mijR2YoChRjnlxuAGf9ZGfzlk8ja8_BWYbwZB08AzhFIP4v8bMHKcPJ9Mccytn6ZZmhEYM-pGA8HcCPFrT3F_WYD0CuwPku4Nm2V5_gIgys292iO_j0yEPYxGlN23r4I9hoFi_2GC2aRp-ESMBJWMd4vf89fQPuBvrn
link.rule.ids 230,315,733,786,790,870,891,1611,27955,27956,53825,53827
linkProvider National Library of Medicine
linkToHtml http://utb.summon.serialssolutions.com/2.0.0/link/0/eLvHCXMwnV3dT9swED8xJg1eBoN9dBvDk9De0tRfDXmsKlC30WqaYOItsh0HIohTtekD_PWc84EoD5O21_hsybnzfdh3vwM44ooZGZs0UAORBYJlJlBK0IAZM4hZaoXIfIHzdDacXIgfl_JyA2RXC1Mn7Rud991t0Xf5dZ1bOS9M2OWJhb-mY7SqnFMRvoCXeF6Z7IL09vEAbVKDGlWDbIrjtiwPY_fQqUV4dXNHMW7YhldIEA0l5Ws2aa3O7Ym7-Txr8okZOt2BP90GmuyTm_6q0n1z_wzb8Z93uAuvW8eUjJrhN7Bh3R7sjxwG5cUd-UbqVNH6Dn4PtsZdm7h9KHzboyrwFZs-64gscl0uy8ISnZdXXpHmS9I29SG5w_WVztNy7j9X1_UliyL-Mph4EHOH-uaWeFvr5cXTL37PRmTeVDOglX0LF6cn5-NJ0PZwCIygrAoUsxqdmMgqVB4ZjTVDjyNKpTXo-lCeighDGqtsFFFNtQebESL19zCoZwZZpvg72HSlsx-ASJUxe5ziJBmLODLa6KEZyAzJuMet68FRx8Vk3kB1JM0TO0-Q70nL9x4cIof_TvG1436CP9O_oChny9UyQf8Iw1PJRdyD9400PC7UCVMPojU5eSTwQN7rI8j9GtC75fbH_555CFuT8-lZcvZ99vMTbOMvjpuy-8-wWS1W9gAdp0p_qY_JA7q0Gtg
linkToPdf http://utb.summon.serialssolutions.com/2.0.0/link/0/eLvHCXMwnV1LT9wwEB61VKJcaAul3b5wJdRbNhvbWZPjatsVfbBCVZFQL5Ht2BBBnGg3e4Bf33EeaJdDD1yTsSV7xvOwZ74BOGKS6jjRWSBH3AacWh1IyaOAaj1KaGY4t77A-XQ-PjnnPy7ii7VWX03Svlb50N0UQ5dfNbmVVaHDPk8sPDudolVlLOJhldnwKTzDM0tFH6h3Dwhol1rkqAZokx93pXkYv4dOLsLL69sIY4cd2EYCMY4jtmGXNmrd1lzOh5mTa6Zo9gL-9otoM1Cuh6taDfXdA3zHR63yJex2DiqZtCSv4Ilxe7A_cRicF7fkC2lSRpu7-D14Pu3bxe1D4dsf1YGv3PTZR2SRq3JZFoaovLz0CjVfkq65D8kdzi9VnpWV_1xfNZctkvhLYeLBzB3qnRviba6XG0-_-D2fkKqtakBr-xrOZ9_-TE-CrpdDoHlE60BSo9CZEUaiErFRoih6HiKLjUYXKGIZFxjaGGmEiFSkPOgM55m_j0F9M7JWsgPYcqUzb4HE0lJznOGgOOGJ0EqrsR7FFsmYx68bwFHPybRqITvS9qmdpcj7tOP9AA6Ry_-n-NxLQIqb6V9SpDPlapmin4Rhasx4MoA3rUTcT9QL1ADEhqzcE3hA780_KAENsHfH8XePHnkI22dfZ-mv7_Of72EHdzhpq-8_wFa9WJmP6D_V6lNzUv4BgVQdWA
openUrl ctx_ver=Z39.88-2004&ctx_enc=info%3Aofi%2Fenc%3AUTF-8&rfr_id=info%3Asid%2Fsummon.serialssolutions.com&rft_val_fmt=info%3Aofi%2Ffmt%3Akev%3Amtx%3Ajournal&rft.genre=article&rft.atitle=Plant-specific+ribosome+biogenesis+factors+in+Arabidopsis+thaliana+with+essential+function+in+rRNA+processing&rft.jtitle=Nucleic+acids+research&rft.au=Palm%2C+Denise&rft.au=Streit%2C+Deniz&rft.au=Shanmugam%2C+Thiruvenkadam&rft.au=Weis%2C+Benjamin+L&rft.date=2019-02-28&rft.pub=Oxford+University+Press&rft.issn=0305-1048&rft.eissn=1362-4962&rft.volume=47&rft.issue=4&rft.spage=1880&rft.epage=1895&rft_id=info:doi/10.1093%2Fnar%2Fgky1261&rft.externalDocID=10.1093%2Fnar%2Fgky1261
thumbnail_l http://covers-cdn.summon.serialssolutions.com/index.aspx?isbn=/lc.gif&issn=0305-1048&client=summon
thumbnail_m http://covers-cdn.summon.serialssolutions.com/index.aspx?isbn=/mc.gif&issn=0305-1048&client=summon
thumbnail_s http://covers-cdn.summon.serialssolutions.com/index.aspx?isbn=/sc.gif&issn=0305-1048&client=summon