Isolation of Circadian-associated Genes in Brassica rapa by Comparative Genomics with Arabidopsis thaliana
Elucidation of the roles of circadian associated factors requires a better understanding of the molecular mechanisms of circadian rhythms, control of flowering time through photoperiodic pathways, and photosensory signal transduction. In Arabidopsis, the APRR1 quintet, APRRs 1, 3, 5, 7, and 9, are k...
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| Published in | Molecules and cells Vol. 23; no. 2; pp. 145 - 153 |
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| Main Authors | , , , , , , , , , , , , , |
| Format | Journal Article |
| Language | English |
| Published |
United States
한국분자세포생물학회
30.04.2007
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| Subjects | |
| Online Access | Get full text |
| ISSN | 1016-8478 0219-1032 |
| DOI | 10.1016/S1016-8478(23)07367-3 |
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| Abstract | Elucidation of the roles of circadian associated factors requires a better understanding of the molecular mechanisms of circadian rhythms, control of flowering time through photoperiodic pathways, and photosensory signal transduction. In Arabidopsis, the APRR1 quintet, APRRs 1, 3, 5, 7, and 9, are known as central oscillator genes. Other plants may share the molecular mechanism underlying the circadian rhythm. To identify and characterize these circadian response genes in Brassica crops whose genome was triplicated after divergence from Arabidopsis, we identified B. rapa BAC clones containing these genes by BLAST analysis of B. rapa BAC end sequences against the five corresponding Arabidopsis regions. |
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| AbstractList | Elucidation of the roles of circadian associated factors requires a better understanding of the molecular mechanisms of circadian rhythms, control of flowering time through photoperiodic pathways, and photosensory signal transduction. In Arabidopsis, the APRR1 quintet, APRRs 1, 3, 5, 7, and 9, are known as central oscillator genes. Other plants may share the molecular mechanism underlying the circadian rhythm. To identify and characterize these circadian response genes in Brassica crops whose genome was triplicated after divergence from Arabidopsis, we identified B. rapa BAC clones containing these genes by BLAST analysis of B. rapa BAC end sequences against the five corresponding Arabidopsis regions. Subsequent fingerprinting, Southern hybridization, and PCR allowed identification of five BAC clones, one for each of the five circadian-related genes. By draft shotgun sequencing of the BAC clones, we identified the complete gene sequences and cloned the five expressed B. rapa circadian-associated gene members, BrPRRs 1, 3, 5, 7, and 9. Phylogenetic analysis revealed that each BrPRR was orthologous to the corresponding APRR at the sequence level. Northern hybridization revealed that the five genes were transcribed at distinct points in the 24 hour period, and Southern hybridization revealed that they are present in 2, 1, 2, 2, and 1 copies, respectively in the B. rapa genome, which was triplicated and then diploidized during the last 15 million years.Elucidation of the roles of circadian associated factors requires a better understanding of the molecular mechanisms of circadian rhythms, control of flowering time through photoperiodic pathways, and photosensory signal transduction. In Arabidopsis, the APRR1 quintet, APRRs 1, 3, 5, 7, and 9, are known as central oscillator genes. Other plants may share the molecular mechanism underlying the circadian rhythm. To identify and characterize these circadian response genes in Brassica crops whose genome was triplicated after divergence from Arabidopsis, we identified B. rapa BAC clones containing these genes by BLAST analysis of B. rapa BAC end sequences against the five corresponding Arabidopsis regions. Subsequent fingerprinting, Southern hybridization, and PCR allowed identification of five BAC clones, one for each of the five circadian-related genes. By draft shotgun sequencing of the BAC clones, we identified the complete gene sequences and cloned the five expressed B. rapa circadian-associated gene members, BrPRRs 1, 3, 5, 7, and 9. Phylogenetic analysis revealed that each BrPRR was orthologous to the corresponding APRR at the sequence level. Northern hybridization revealed that the five genes were transcribed at distinct points in the 24 hour period, and Southern hybridization revealed that they are present in 2, 1, 2, 2, and 1 copies, respectively in the B. rapa genome, which was triplicated and then diploidized during the last 15 million years. Elucidation of the roles of circadian associated factors requires a better understanding of the molecular mechanisms of circadian rhythms, control of flowering time through photoperiodic pathways, and photosensory signal transduction. In Arabidopsis, the APRR1 quintet, APRRs 1, 3, 5, 7, and 9, are known as central oscillator genes. Other plants may share the molecular mechanism underlying the circadian rhythm. To identify and characterize these circadian response genes in Brassica crops whose genome was triplicated after divergence from Arabidopsis, we identified B. rapa BAC clones containing these genes by BLAST analysis of B. rapa BAC end sequences against the five corresponding Arabidopsis regions. Subsequent fingerprinting, Southern hybridization, and PCR allowed identification of five BAC clones, one for each of the five circadian-related genes. By draft shotgun sequencing of the BAC clones, we identified the complete gene sequences and cloned the five expressed B. rapa circadian-associated gene members, BrPRRs 1, 3, 5, 7, and 9. Phylogenetic analysis revealed that each BrPRR was orthologous to the corresponding APRR at the sequence level. Northern hybridization revealed that the five genes were transcribed at distinct points in the 24 hour period, and Southern hybridization revealed that they are present in 2, 1, 2, 2, and 1 copies, respectively in the B. rapa genome, which was triplicated and then diploidized during the last 15 million years. Elucidation of the roles of circadian associated factors requires a better understanding of the molecular mechanisms of circadian rhythms, control of flowering time through photoperiodic pathways, and photosensory signal transduction. In Arabidopsis, the APRR1 quintet, APRRs 1, 3, 5, 7, and 9, are known as central oscillator genes. Other plants may share the molecular mechanism underlying the circadian rhythm. To identify and characterize these circadian response genes in Brassica crops whose genome was triplicated after divergence from Arabidopsis, we identified B. rapa BAC clones containing these genes by BLAST analysis of B. rapa BAC end sequences against the five corresponding Arabidopsis regions. KCI Citation Count: 22 |
| Author | Park, J.Y. (National Institute of Agricultural Biotechnology, RDA, Suwon, Republic of Korea) Um, S.H. (National Institute of Agricultural Biotechnology, RDA, Suwon, Republic of Korea) Kwon, S.J. (National Institute of Agricultural Biotechnology, RDA, Suwon, Republic of Korea) Lim, M.H. (National Institute of Agricultural Biotechnology, RDA, Suwon, Republic of Korea) Lee, S.I. (National Institute of Agricultural Biotechnology, RDA, Suwon, Republic of Korea) Choi, B.S. (National Institute of Agricultural Biotechnology, RDA, Suwon, Republic of Korea) Lee, S.C. (National Institute of Agricultural Biotechnology, RDA, Suwon, Republic of Korea) Jin, M.A. (National Institute of Agricultural Biotechnology, RDA, Suwon, Republic of Korea) Kim, J.S. (National Institute of Agricultural Biotechnology, RDA, Suwon, Republic of Korea) Kim, J.A. (National Institute of Agricultural Biotechnology, RDA, Suwon, Republic of Korea) Yang, T.J. (National Institute of Agricultural Biotechnology, RDA, Suwon, Republic of Ko |
| Author_xml | – sequence: 1 fullname: Kim, J.A. (National Institute of Agricultural Biotechnology, RDA, Suwon, Republic of Korea) – sequence: 2 fullname: Yang, T.J. (National Institute of Agricultural Biotechnology, RDA, Suwon, Republic of Korea), E-mail: tjyang@snu.ac.kr – sequence: 3 fullname: Kim, J.S. (National Institute of Agricultural Biotechnology, RDA, Suwon, Republic of Korea) – sequence: 4 fullname: Park, J.Y. (National Institute of Agricultural Biotechnology, RDA, Suwon, Republic of Korea) – sequence: 5 fullname: Kwon, S.J. (National Institute of Agricultural Biotechnology, RDA, Suwon, Republic of Korea) – sequence: 6 fullname: Lim, M.H. (National Institute of Agricultural Biotechnology, RDA, Suwon, Republic of Korea) – sequence: 7 fullname: Jin, M.A. (National Institute of Agricultural Biotechnology, RDA, Suwon, Republic of Korea) – sequence: 8 fullname: Lee, S.C. (National Institute of Agricultural Biotechnology, RDA, Suwon, Republic of Korea) – sequence: 9 fullname: Lee, S.I. (National Institute of Agricultural Biotechnology, RDA, Suwon, Republic of Korea) – sequence: 10 fullname: Choi, B.S. (National Institute of Agricultural Biotechnology, RDA, Suwon, Republic of Korea) – sequence: 11 fullname: Um, S.H. (National Institute of Agricultural Biotechnology, RDA, Suwon, Republic of Korea) – sequence: 12 fullname: Kim, H.I. (National Institute of Agricultural Biotechnology, RDA, Suwon, Republic of Korea) – sequence: 13 fullname: Chun, C.H. (Seoul National University, Seoul, Republic of Korea) – sequence: 14 fullname: Park, B.S. (National Institute of Agricultural Biotechnology, RDA, Suwon, Republic of Korea), E-mail: pbeom@rda.go.kr |
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| Cites_doi | 10.1242/dev.125.3.485 10.1111/j.1365-313X.2004.02244.x 10.1105/tpc.12.9.1523 10.1007/PL00006502 10.1016/S1016-8478(23)13190-6 10.1093/bib/5.2.150 10.1101/gr.8.3.186 10.1101/gr.8.3.195 10.1126/science.282.5389.662 10.1046/j.1365-313x.2000.00781.x 10.1271/bbb.69.410 10.1093/genetics/138.2.499 10.1073/pnas.160271297 10.1016/0003-2697(83)90418-9 10.1002/cfg.394 10.1093/oxfordjournals.jbchem.a021972 10.1073/pnas.96.7.4176 10.1007/BF00226982 10.1046/j.1365-313X.1997.12020247.x 10.1105/tpc.021410 10.1104/pp.102.016436 10.1046/j.1365-313x.2000.00790.x 10.1016/S0981-9428(01)01239-6 10.1002/cfg.465 10.1104/pp.004051 10.1016/S0092-8674(00)81465-8 10.1093/pcp/pcg135 10.1101/gr.10.4.577 10.1093/pcp/41.6.791 10.1038/nature01521 10.1093/pcp/pci087 10.1101/gr.8.3.175 10.1038/35048692 10.1105/tpc.106.041665 10.1101/gr.3531105 10.1186/gb-2001-2-3-reviews1011 10.1016/S0168-9525(00)02179-X 10.1534/genetics.106.060152 10.1002/0470869143.kc005 10.1126/science.1061320 10.1016/S1534-5807(02)00170-3 10.1046/j.1365-313X.2003.01747.x 10.1093/genetics/164.1.359 10.1101/gr.7.11.1072 10.1073/pnas.070430597 10.1093/pcp/pcd043 10.1105/tpc.105.040535 |
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| References | Kowalski (10.1016/S1016-8478(23)07367-3_bib18) 1994; 138 Gordon (10.1016/S1016-8478(23)07367-3_bib12) 1998; 8 Kumar (10.1016/S1016-8478(23)07367-3_bib20) 2004; 5 Gebhardt (10.1016/S1016-8478(23)07367-3_bib11) 2003; 34 Bowers (10.1016/S1016-8478(23)07367-3_bib6) 2003; 422 Hall (10.1016/S1016-8478(23)07367-3_bib15) 2002; 129 Love (10.1016/S1016-8478(23)07367-3_bib22) 2004; 5 Town (10.1016/S1016-8478(23)07367-3_bib44) 2006; 18 Ku (10.1016/S1016-8478(23)07367-3_bib19) 2000; 97 Rana (10.1016/S1016-8478(23)07367-3_bib38) 2004; 40 Paterson (10.1016/S1016-8478(23)07367-3_bib37) 2001; 2 Sambrook (10.1016/S1016-8478(23)07367-3_bib39) 1989 (10.1016/S1016-8478(23)07367-3_bib3) 2000; 408 Mizuno (10.1016/S1016-8478(23)07367-3_bib32) 2005; 46 Lukens (10.1016/S1016-8478(23)07367-3_bib23) 2003; 164 Lysak (10.1016/S1016-8478(23)07367-3_bib24) 2005; 15 Matsushika (10.1016/S1016-8478(23)07367-3_bib27) 2000; 41 Yang (10.1016/S1016-8478(23)07367-3_bib47) 2005; 6 Schaffer (10.1016/S1016-8478(23)07367-3_bib40) 1998; 93 Blanc (10.1016/S1016-8478(23)07367-3_bib5) 2004; 16 Cho (10.1016/S1016-8478(23)07367-3_bib7) 1994; 89 Feinberg (10.1016/S1016-8478(23)07367-3_bib10) 1983; 132 Mizoguchi (10.1016/S1016-8478(23)07367-3_bib30) 2002; 2 Schmidt (10.1016/S1016-8478(23)07367-3_bib41) 2001; 39 Bancroft (10.1016/S1016-8478(23)07367-3_bib4) 2001; 17 Yang (10.1016/S1016-8478(23)07367-3_bib48) 2006; 18 Kim (10.1016/S1016-8478(23)07367-3_bib17) 2006; 174 Grant (10.1016/S1016-8478(23)07367-3_bib13) 2000; 97 O’Neill (10.1016/S1016-8478(23)07367-3_bib35) 2000; 23 Murakami (10.1016/S1016-8478(23)07367-3_bib33) 2003; 44 Zhu (10.1016/S1016-8478(23)07367-3_bib49) 2003; 131 Green (10.1016/S1016-8478(23)07367-3_bib14) 1999; 96 Marra (10.1016/S1016-8478(23)07367-3_bib26) 1997; 7 Murakami (10.1016/S1016-8478(23)07367-3_bib34) 2005; 69 Schwartz (10.1016/S1016-8478(23)07367-3_bib42) 2000; 10 Mizuno (10.1016/S1016-8478(23)07367-3_bib31) 1998; 123 Meinke (10.1016/S1016-8478(23)07367-3_bib29) 1998; 282 Alabadi (10.1016/S1016-8478(23)07367-3_bib2) 2001; 293 Lim (10.1016/S1016-8478(23)07367-3_bib21) 2005; 19 Meinke (10.1016/S1016-8478(23)07367-3_bib28) 1997; 12 Somers (10.1016/S1016-8478(23)07367-3_bib43) 1998; 125 Makino (10.1016/S1016-8478(23)07367-3_bib25) 2000; 41 Ewing (10.1016/S1016-8478(23)07367-3_bib9) 1998; 8 Paterson (10.1016/S1016-8478(23)07367-3_bib36) 2000; 12 Yang (10.1016/S1016-8478(23)07367-3_bib45) 1999; 48 10.1016/S1016-8478(23)07367-3_bib16 Acarkan (10.1016/S1016-8478(23)07367-3_bib1) 2000; 23 Yang (10.1016/S1016-8478(23)07367-3_bib46) 2004; 2 Ewing (10.1016/S1016-8478(23)07367-3_bib8) 1998; 8 |
| References_xml | – volume: 125 start-page: 485 year: 1998 ident: 10.1016/S1016-8478(23)07367-3_bib43 article-title: The short-period mutant, toc1-1, alters circadian clock regulation of multiple outputs throughout development in Arabidopsis thaliana publication-title: Development doi: 10.1242/dev.125.3.485 – volume: 40 start-page: 725 year: 2004 ident: 10.1016/S1016-8478(23)07367-3_bib38 article-title: Conservation of the microstructure of genome segments in Brassica napus and its diploid relatives publication-title: Plant J doi: 10.1111/j.1365-313X.2004.02244.x – volume: 12 start-page: 1523 year: 2000 ident: 10.1016/S1016-8478(23)07367-3_bib36 article-title: Comparative genomics of plant chromosomes publication-title: Plant Cell doi: 10.1105/tpc.12.9.1523 – volume: 48 start-page: 597 year: 1999 ident: 10.1016/S1016-8478(23)07367-3_bib45 article-title: Rates of nucleotide substitution in angiosperm mitochondrial DNA sequences and dates of divergence between Brassica and other angiosperm lineages publication-title: J. Mol. Evol doi: 10.1007/PL00006502 – volume: 19 start-page: 436 year: 2005 ident: 10.1016/S1016-8478(23)07367-3_bib21 article-title: Characterization of rDNAs and tandem repeats in the heterochromatin of Brassica rapa publication-title: Mol. Cells doi: 10.1016/S1016-8478(23)13190-6 – volume: 5 start-page: 150 year: 2004 ident: 10.1016/S1016-8478(23)07367-3_bib20 article-title: MEGA3: integrated software for molecular evolutionary genetics analysis and sequence alignment publication-title: Brief. Bioinform doi: 10.1093/bib/5.2.150 – volume: 8 start-page: 186 year: 1998 ident: 10.1016/S1016-8478(23)07367-3_bib8 article-title: Base-calling of automated sequencer traces using phred. II. Error probabilities publication-title: Genome Res doi: 10.1101/gr.8.3.186 – volume: 2 start-page: 174 year: 2004 ident: 10.1016/S1016-8478(23)07367-3_bib46 article-title: Construction of various copy number plasmid vectors and their utility for genome sequencing publication-title: Genomics Inform – volume: 8 start-page: 195 year: 1998 ident: 10.1016/S1016-8478(23)07367-3_bib12 article-title: Consed: a graphical tool for sequence finishing publication-title: Genome Res doi: 10.1101/gr.8.3.195 – volume: 282 start-page: 662 year: 1998 ident: 10.1016/S1016-8478(23)07367-3_bib29 article-title: Arabidopsis thaliana: a model plant for genome analysis publication-title: Science doi: 10.1126/science.282.5389.662 – volume: 23 start-page: 233 year: 2000 ident: 10.1016/S1016-8478(23)07367-3_bib35 article-title: Comparative physical mapping of segments of the genome of Brassica oleracea var. alboglabra that are homoeologous to sequenced regions of chromosomes 4 and 5 of Arabidopsis thaliana publication-title: Plant J doi: 10.1046/j.1365-313x.2000.00781.x – volume: 69 start-page: 410 year: 2005 ident: 10.1016/S1016-8478(23)07367-3_bib34 article-title: Circadian-associated rice pseudo response regulators (OsPRRs): insight into the control of flowering time publication-title: Biosci. Biotechnol. Biochem doi: 10.1271/bbb.69.410 – volume: 138 start-page: 499 year: 1994 ident: 10.1016/S1016-8478(23)07367-3_bib18 article-title: Comparative mapping of Arabidopsis thaliana and Brassica oleracea chromosomes reveals islands of conserved organization publication-title: Genetics doi: 10.1093/genetics/138.2.499 – volume: 97 start-page: 9121 year: 2000 ident: 10.1016/S1016-8478(23)07367-3_bib19 article-title: Comparing sequenced segments of the tomato and Arabidop-sis genomes: Large-scale duplication followed by selective gene loss creates a network of synteny publication-title: Proc. Natl. Acad. Sci. USA doi: 10.1073/pnas.160271297 – volume: 132 start-page: 6 year: 1983 ident: 10.1016/S1016-8478(23)07367-3_bib10 article-title: A technique for radiolabeling DNA restriction endonuclease fragments to high specific activity publication-title: Anal. Biochem doi: 10.1016/0003-2697(83)90418-9 – volume: 5 start-page: 276 year: 2004 ident: 10.1016/S1016-8478(23)07367-3_bib22 article-title: New computational tools for Brassica genome research publication-title: Comp. Funct. Genom doi: 10.1002/cfg.394 – volume: 123 start-page: 555 year: 1998 ident: 10.1016/S1016-8478(23)07367-3_bib31 article-title: His-Asp phosphotransfer signal transduction publication-title: J. Biochem. (Tokyo) doi: 10.1093/oxfordjournals.jbchem.a021972 – volume: 96 start-page: 4176 year: 1999 ident: 10.1016/S1016-8478(23)07367-3_bib14 article-title: Loss of the circadian clock-associated protein 1 in Arabidopsis results in altered clock-regulated gene expression publication-title: Proc. Natl. Acad. Sci. USA doi: 10.1073/pnas.96.7.4176 – volume: 89 start-page: 54 year: 1994 ident: 10.1016/S1016-8478(23)07367-3_bib7 article-title: The semidwarf gene, sd-1, of rice (Oryza sativa L.). II. Molecular mapping and marker-assisted selection publication-title: Theor. Appl. Genet doi: 10.1007/BF00226982 – year: 1989 ident: 10.1016/S1016-8478(23)07367-3_bib39 – volume: 12 start-page: 247 year: 1997 ident: 10.1016/S1016-8478(23)07367-3_bib28 article-title: Community standards for Arabidopsis genetics publication-title: Plant J doi: 10.1046/j.1365-313X.1997.12020247.x – volume: 16 start-page: 1679 year: 2004 ident: 10.1016/S1016-8478(23)07367-3_bib5 article-title: Functional divergence of duplicated genes formed by polyploidy during Arabidopsis evolution publication-title: Plant Cell doi: 10.1105/tpc.021410 – volume: 131 start-page: 1018 year: 2003 ident: 10.1016/S1016-8478(23)07367-3_bib49 article-title: Syntenic relationships between Medicago truncatula and Arabidopsis reveal extensive divergence of genome organization publication-title: Plant Physiol doi: 10.1104/pp.102.016436 – volume: 23 start-page: 55 year: 2000 ident: 10.1016/S1016-8478(23)07367-3_bib1 article-title: Comparative genome analysis reveals extensive conservation of genome organisation for Arabidopsis thaliana and Capsella rubella publication-title: Plant J doi: 10.1046/j.1365-313x.2000.00790.x – volume: 39 start-page: 253 year: 2001 ident: 10.1016/S1016-8478(23)07367-3_bib41 article-title: Comparative structural genomics in the Brassicaceae family publication-title: Plant Phys. Biochem doi: 10.1016/S0981-9428(01)01239-6 – volume: 6 start-page: 138 year: 2005 ident: 10.1016/S1016-8478(23)07367-3_bib47 article-title: The Korea Brassica genome project: a glimpse of the Brassica genome based on comparative genome analysis with Arabidopsis publication-title: Comp. Funct. Genom doi: 10.1002/cfg.465 – volume: 129 start-page: 1439 year: 2002 ident: 10.1016/S1016-8478(23)07367-3_bib15 article-title: Beyond the Arabi-dopisis genome: opportunities for comparative genomics publication-title: Plant Physiol doi: 10.1104/pp.004051 – volume: 93 start-page: 1219 year: 1998 ident: 10.1016/S1016-8478(23)07367-3_bib40 article-title: The late elongated hypocotyl mutation of Arabidopsis disrupts circadian rhythms and the photoperiodic control of flowering publication-title: Cell doi: 10.1016/S0092-8674(00)81465-8 – volume: 44 start-page: 1229 year: 2003 ident: 10.1016/S1016-8478(23)07367-3_bib33 article-title: The evolutionarily conserved OsPRR quintet: rice pseudo-response regulators implicated in circadian rhythm publication-title: Plant Cell Physiol doi: 10.1093/pcp/pcg135 – volume: 10 start-page: 577 year: 2000 ident: 10.1016/S1016-8478(23)07367-3_bib42 article-title: PipMaker -a web server for aligning two genomic DNA sequences publication-title: Genome Res doi: 10.1101/gr.10.4.577 – volume: 41 start-page: 791 year: 2000 ident: 10.1016/S1016-8478(23)07367-3_bib25 article-title: Genes encoding pseudo-response regulators: insight into His-to-Asp phosphorelay and circadian rhythm in Arabidopsis thaliana publication-title: Plant Cell Physiol doi: 10.1093/pcp/41.6.791 – volume: 422 start-page: 433 year: 2003 ident: 10.1016/S1016-8478(23)07367-3_bib6 article-title: Unravelling angiosperm genome evolution by phylogenetic analysis of chromosomal duplication events publication-title: Nature doi: 10.1038/nature01521 – volume: 46 start-page: 677 year: 2005 ident: 10.1016/S1016-8478(23)07367-3_bib32 article-title: Pseudo-response regulators (PRRs) or true oscillator components (TOCs) publication-title: Plant Cell Physiol doi: 10.1093/pcp/pci087 – volume: 8 start-page: 175 year: 1998 ident: 10.1016/S1016-8478(23)07367-3_bib9 article-title: Basecalling of automated sequencer traces using phred. I. Accuracy assessment publication-title: Genome Res doi: 10.1101/gr.8.3.175 – volume: 408 start-page: 796 year: 2000 ident: 10.1016/S1016-8478(23)07367-3_bib3 article-title: Analysis of the genome sequence of the flowering plant Arabidopsis thaliana publication-title: Nature doi: 10.1038/35048692 – volume: 18 start-page: 1348 year: 2006 ident: 10.1016/S1016-8478(23)07367-3_bib44 article-title: Comparative genomics of Brassica oleracea and Arabidopsis thaliana reveal gene loss, fragmentation, and dispersal after polyploidy publication-title: Plant Cell doi: 10.1105/tpc.106.041665 – volume: 15 start-page: 516 year: 2005 ident: 10.1016/S1016-8478(23)07367-3_bib24 article-title: Chromosome triplication found across the tribe Brassiceae publication-title: Genome Res doi: 10.1101/gr.3531105 – volume: 2 year: 2001 ident: 10.1016/S1016-8478(23)07367-3_bib37 article-title: Brassica genomics: a complement to, and early beneficiary of, the Arabidopsis sequence publication-title: Genome Biol doi: 10.1186/gb-2001-2-3-reviews1011 – volume: 17 start-page: 89 year: 2001 ident: 10.1016/S1016-8478(23)07367-3_bib4 article-title: Duplicate and diverge: the evolution of plant genome microstructure publication-title: Trends Genet doi: 10.1016/S0168-9525(00)02179-X – volume: 174 start-page: 29 year: 2006 ident: 10.1016/S1016-8478(23)07367-3_bib17 article-title: A sequence-tagged linkage map of Brassica rapa publication-title: Genetics doi: 10.1534/genetics.106.060152 – ident: 10.1016/S1016-8478(23)07367-3_bib16 doi: 10.1002/0470869143.kc005 – volume: 293 start-page: 880 year: 2001 ident: 10.1016/S1016-8478(23)07367-3_bib2 article-title: Reciprocal regulation between TOC1 and LHY/CCA1 within the Arabidopsis circadian clock publication-title: Science doi: 10.1126/science.1061320 – volume: 2 start-page: 629 year: 2002 ident: 10.1016/S1016-8478(23)07367-3_bib30 article-title: LHY and CCA1 are partially redundant genes required to maintain circadian rhythms in Arabidopsis publication-title: Dev. Cell doi: 10.1016/S1534-5807(02)00170-3 – volume: 34 start-page: 529 year: 2003 ident: 10.1016/S1016-8478(23)07367-3_bib11 article-title: Comparative mapping between potato (Solanum tuberosum) and Arabidopsis thaliana reveals structurally conserved domains and ancient duplications in the potato genome publication-title: Plant J doi: 10.1046/j.1365-313X.2003.01747.x – volume: 164 start-page: 359 year: 2003 ident: 10.1016/S1016-8478(23)07367-3_bib23 article-title: Comparison of a Brassica oleracea genetic map with the genome of Arabidopsis thaliana publication-title: Genetics doi: 10.1093/genetics/164.1.359 – volume: 7 start-page: 1072 year: 1997 ident: 10.1016/S1016-8478(23)07367-3_bib26 article-title: High throughput fingerprint analysis of large-insert clones publication-title: Genome Res doi: 10.1101/gr.7.11.1072 – volume: 97 start-page: 4168 year: 2000 ident: 10.1016/S1016-8478(23)07367-3_bib13 article-title: Genome organization in dicots: genome duplication in Arabidopsis and synteny between soybean and Arabidopsis publication-title: Proc. Natl. Acad. Sci. USA doi: 10.1073/pnas.070430597 – volume: 41 start-page: 1002 year: 2000 ident: 10.1016/S1016-8478(23)07367-3_bib27 article-title: Circadian waves of expression of the APRR1/TOC1 family of pseudo-response regulators in Arabidopsis thaliana: insight into the plant circadian clock publication-title: Plant Cell Physiol doi: 10.1093/pcp/pcd043 – volume: 18 start-page: 1339 year: 2006 ident: 10.1016/S1016-8478(23)07367-3_bib48 article-title: Sequence-level analysis of the diploidization process in the triplicated FLOWERING LOCUS C region of Brassica rapa publication-title: Plant Cell doi: 10.1105/tpc.105.040535 |
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| Title | Isolation of Circadian-associated Genes in Brassica rapa by Comparative Genomics with Arabidopsis thaliana |
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