Archaeal nitrification is a key driver of high nitrous oxide emissions from arctic peatlands

Bare peat surfaces created by frost action and wind erosion in permafrost peatlands have been shown to emit high amounts of nitrous oxide (N2O). With global warming, emissions of this highly potent greenhouse gas are expected to increase in Arctic permafrost peatlands. In natural unmanaged soils wit...

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Published inSoil biology & biochemistry Vol. 137; p. 107539
Main Authors Siljanen, Henri M.P., Alves, Ricardo J.E., Ronkainen, Jussi G., Lamprecht, Richard E., Bhattarai, Hem R., Bagnoud, Alexandre, Marushchak, Maija E., Martikainen, Pertti J., Schleper, Christa, Biasi, Christina
Format Journal Article
LanguageEnglish
Published Elsevier Ltd 01.10.2019
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Abstract Bare peat surfaces created by frost action and wind erosion in permafrost peatlands have been shown to emit high amounts of nitrous oxide (N2O). With global warming, emissions of this highly potent greenhouse gas are expected to increase in Arctic permafrost peatlands. In natural unmanaged soils with low nitrogen deposition, such as Arctic soils, nitrification is the main source of nitrite and nitrate, and thus a key driver of N2O emissions. Here, we investigated nitrification, ammonia oxidizer populations and N2O production in vegetated and bare peat soils from four distant Arctic geographic locations. Through a combination of molecular analyses and group-specific inhibitor assays, we show that ammonia oxidation, the first step in nitrification, is mainly performed by ammonia-oxidizing archaea (AOA). All soils from different locations, including bare peat soils with high N2O emissions, harbored only two AOA phylotypes, including an organism closely related to Ca. Nitrosocosmicus spp. This indicates that high N2O emissions from these ecosystems are primarily fueled by nitrification mediated by very few archaeal species. To our knowledge, arctic peat soils in this study are the first natural environments where high N2O emissions have been linked to AOA. Any changes in archaeal nitrification induced by global warming will therefore impact on N2O emissions from the permafrost peatlands. •Ammonia-oxidizing archaea (AOA) are driving nitrification in Arctic peat soils which have high N2O emissions.•Arctic peat soils have with only two AOA phylotypes surprisingly low diversity of AOA.•AOA are important key species for nitrification in Arctic peat soils.
AbstractList Bare peat surfaces created by frost action and wind erosion in permafrost peatlands show high nitrous oxide (N2O) emissions. With global warming, emissions of this highly potent greenhouse gas are expected to increase in Arctic permafrost peatlands. In natural unmanaged soils with low nitrogen deposition, such as Arctic soils, nitrification is the main source of nitrite and nitrate, thus a key driver of N2O emissions. Here, we investigated nitrification, ammonia oxidizer populations and N2O production in vegetated and bare peat soils from four distant Arctic locations. Through a combination of molecular analyses and group-specific inhibitor assays, we show that ammonia oxidation, the first step in nitrification, is mainly performed by ammonia-oxidizing archaea (AOA). All soils from different geographical locations, including bare peat soils with high N2O emissions, harbored only two AOA phylotypes, including an organism closely related to Ca. Nitrosocosmicus spp. This indicates that high N2O emissions from these ecosystems are primarily fueled by nitrification mediated by very few archaeal species. To our knowledge, Arctic peat soils in this study are the first natural environments where high N2O emissions have been linked to AOA. Any changes in archaeal nitrification induced by global warming will therefore impact on N2O emissions from the permafrost peatlands.
Bare peat surfaces created by frost action and wind erosion in permafrost peatlands have been shown to emit high amounts of nitrous oxide (N2O). With global warming, emissions of this highly potent greenhouse gas are expected to increase in Arctic permafrost peatlands. In natural unmanaged soils with low nitrogen deposition, such as Arctic soils, nitrification is the main source of nitrite and nitrate, and thus a key driver of N2O emissions. Here, we investigated nitrification, ammonia oxidizer populations and N2O production in vegetated and bare peat soils from four distant Arctic geographic locations. Through a combination of molecular analyses and group-specific inhibitor assays, we show that ammonia oxidation, the first step in nitrification, is mainly performed by ammonia-oxidizing archaea (AOA). All soils from different locations, including bare peat soils with high N2O emissions, harbored only two AOA phylotypes, including an organism closely related to Ca. Nitrosocosmicus spp. This indicates that high N2O emissions from these ecosystems are primarily fueled by nitrification mediated by very few archaeal species. To our knowledge, arctic peat soils in this study are the first natural environments where high N2O emissions have been linked to AOA. Any changes in archaeal nitrification induced by global warming will therefore impact on N2O emissions from the permafrost peatlands. •Ammonia-oxidizing archaea (AOA) are driving nitrification in Arctic peat soils which have high N2O emissions.•Arctic peat soils have with only two AOA phylotypes surprisingly low diversity of AOA.•AOA are important key species for nitrification in Arctic peat soils.
ArticleNumber 107539
Author Bhattarai, Hem R.
Lamprecht, Richard E.
Biasi, Christina
Siljanen, Henri M.P.
Bagnoud, Alexandre
Marushchak, Maija E.
Alves, Ricardo J.E.
Schleper, Christa
Ronkainen, Jussi G.
Martikainen, Pertti J.
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  givenname: Ricardo J.E.
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  givenname: Jussi G.
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  givenname: Hem R.
  orcidid: 0000-0003-2372-9518
  surname: Bhattarai
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  organization: University of Eastern Finland, Department of Environmental and Biological Sciences, P.O. Box 1627, 70211, Kuopio, Finland
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  givenname: Pertti J.
  surname: Martikainen
  fullname: Martikainen, Pertti J.
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  surname: Schleper
  fullname: Schleper, Christa
  email: christa.schleper@univie.ac.at
  organization: University of Vienna, Dep. of Ecogenomics and Systems Biology, Althanstr. 14, 1090 Vienna, Austria
– sequence: 10
  givenname: Christina
  surname: Biasi
  fullname: Biasi, Christina
  organization: University of Eastern Finland, Department of Environmental and Biological Sciences, P.O. Box 1627, 70211, Kuopio, Finland
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Cites_doi 10.1038/nature04983
10.1073/pnas.1109000108
10.1016/j.soilbio.2013.01.020
10.1016/j.soilbio.2007.03.001
10.1002/2015GB005084
10.1038/366051a0
10.1038/ngeo434
10.1111/gcb.12318
10.1128/AEM.00595-10
10.1016/S0022-2836(05)80360-2
10.1111/1758-2229.12477
10.1038/ngeo230
10.1890/04-0988
10.1038/nmeth.f.303
10.1038/ismej.2016.192
10.1128/AEM.03047-09
10.1038/s41396-017-0025-5
10.1111/j.1462-2920.2009.01891.x
10.1016/S0169-555X(02)00254-4
10.1038/s41467-018-03861-1
10.1134/S1064229316050069
10.1111/1574-6968.12164
10.1093/bioinformatics/btq461
10.1038/s41467-018-03540-1
10.1007/s10021-013-9710-z
10.5194/bg-7-2711-2010
10.1111/j.1462-2920.2012.02882.x
10.1111/j.1462-2920.2008.01735.x
10.18637/jss.v021.i12
10.1098/rstb.2013.0122
10.1038/nature16459
10.5194/bg-12-7299-2015
10.1038/ismej.2013.35
10.1002/2015GB005370
10.1126/science.1176985
10.1038/ismej.2011.172
10.1111/j.1758-2229.2010.00237.x
10.1038/ismej.2013.220
10.1029/2007JG000521
10.1016/j.soilbio.2006.06.006
10.1128/AEM.06132-11
10.1016/j.soilbio.2018.04.021
10.1016/j.geoderma.2005.10.008
10.1038/nmeth.3869
10.2307/2845930
10.1111/j.1365-2486.2011.02431.x
10.3389/fmicb.2012.00352
10.1016/j.soilbio.2009.02.024
10.1111/j.1469-8137.2007.02098.x
10.1111/gcb.13563
10.1073/pnas.1219993110
10.1016/j.soilbio.2016.12.013
10.1038/ismej.2016.2
10.1016/j.tim.2012.08.001
10.1093/femsre/fuv021
10.1175/JAS-D-15-0278.1
10.1111/j.1365-2486.2011.02442.x
10.1073/pnas.1702902114
10.1016/S0038-0717(98)00166-7
10.1093/bioinformatics/btr381
10.1038/nature23679
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References Booth, Stark, Rastetter (bib7) 2005; 75
Schaeffer, Sharp, Schimel, Welker (bib58) 2013; 19
Neuwirth (bib44) 2014
Palmer, Biasi, Horn (bib48) 2012; 6
Gubry-Rangin, Hai, Quince, Engel, Thomson, James, Schloter, Griffiths, Prosser, Nicol (bib19) 2011; 108
Myhre, Shindell, Bréon, Collins, Fuglestvedt, Huang, Koch, Lamarque, Lee, Mendoza, Nakajima, Robock, Stephens, Takemura, Zhang (bib42) 2013
Lamb, Han, Lanoil, Henry, Brummell, Banerjee (bib32) 2011; 17
R Core Team (bib52) 2018
Repo, Susiluoto, Lind, Jokinen, Elsakov, Biasi, Virtanen, Martikainen (bib55) 2009; 2
Jia, Conrad (bib26) 2009; 11
Pagés, Aboyoun, Gentleman, DebRoy (bib47) 2017
Kanakidou, Myriokefalitakis, Daskalakisa, Fanourgakis (bib28) 2016; 73
Kits, Sedlacek, Lebedeva, Han, Bulaev, Pjevac, Daebeler, Romano, Albertsen, Stein, Daims, Wagner (bib30) 2017; 549
Wickham (bib69) 2007; 21
Edgar (bib14) 2010; 26
Herrmann, Hädrich, Küsel (bib20) 2012; 14
Inselsbacher, Cambui, Richter, Stange, Mercier, Wanek (bib23) 2007; 175
Zhu-Barker, Cavazos, Ostrom, Horwath, Glass (bib74) 2015; 126
Christensen, Michelsen, Jonasson (bib11) 1999; 31
Kozlowski, Stieglmeier, Schleper, Klotz, Stein (bib31) 2016; 10
Ravishankara, Daniel, Portmann (bib53) 2009; 326
Stopnisek, Gubry-Rangin, Höfferle, Nicol, Mandic-Mulec, Prosser (bib63) 2010; 76
van Lent, Hergoualc’h, Verchot (bib66) 2015; 12
Alves, Wanek, Zappe, Richter, Svenning, Schleper, Urich (bib3) 2013; 7
Altschul, Gish, Miller, Myers, Lipman (bib1) 1990; 215
Hu, Chen, He (bib22) 2015; 39
Seppälä (bib59) 2003; 52
Reay, Dentener, Smith, Grace, Feely (bib54) 2008; 1
Isobe, Ikutani, Fang, Yoh, Mo, Suwa, Yoshida, Senoo, Otsuka, Koba (bib25) 2018; 122
Mettel, Kim, Shrestha, Liesack (bib40) 2010; 76
van Kessel, Speth, Albertsen, Nielsen, Op den Camp, Kartal, Jetten, Lücker (bib65) 2015; 528
Daebeler, Bodelier, Hefting, Rütting, Laanbroek (bib13) 2017; 107
IPCC (bib24) 2018
Martikainen, Nykänen, Crill, Silvola (bib38) 1993; 366
Hink, Gubry-Rangin, Nicol, Prosser (bib21) 2018; 12
Alves, Kerou, Zappe, Bittner, Abby, Schmidt, Pfeifer (bib2) 2019; 10
Ma, Schautz, Fishback, Bedard-Haughn, Farrell, Siciliano (bib36) 2007; 39
Wickham (bib70) 2009
Pärn, Verhoeva, Butterbach-Bahl, Dise, Ullah, Aasa, Egorov, Espenber, Järveoja, Jauhiainen, Kasak, Klemedtsson, Kull, Laggoun-Défarge, Lapshina, Lohila, Lõhmus, Maddison, Mitsch, Müller, Niinimets, Osborne, Pae, Salm, Sgouridis, Sohar, Soosaar, Storey, Teemusk, Tenywa, Tournebize, Truu, Veber, Villa, Sann Zaw, Mander (bib49) 2018; 9
Wild, Schnecker, Knoltsch, Takriti, Mooshammer, Gentsch, Mikutta, Eloy Alves (bib72) 2015; 29
Rodionow, Flessa, Kazansky, Guggenberger (bib56) 2006; 135
Stieglmeier, Mooshammer, Kitzler, Wanek, Zechmeister-Boltenstern, Richter, Schleper (bib62) 2013; 8
Sauder, Albertsen, Engel, Schwarz, Nielsen, Wagner, Neufeld (bib57) 2017; 11
Biasi, Jokinen, Marushchak, Hämäläinen, Trubnikova, Oinonen, Martikainen (bib6) 2014; 17
Butterbach-Bahl, Baggs, Dannenmann, Kiese, Zechmeister-Boltenstern (bib8) 2013; 368
Kaverin, Pastukhov, Lapteva, Biasi, Marushchak, Martikainen (bib29) 2016; 49
Daebeler, Abell, Bodelier, Bodrossy, Frampton, Hefting, Laanbroek (bib12) 2012; 3
Edgar, Haas, Clemente, Quince, Knight (bib15) 2011; 27
Shen, Stieglmeier, Dai, Urich, Schleper (bib60) 2013; 344
Siciliano, Ma, Ferguson, Farrell (bib61) 2009; 41
Callahan, McMurde, Rosen, Han, Johnson, Holmes (bib9) 2016; 13
Oksanen, Guillaume Blanchet, Friendly, Kindt, Legendre, McGlinn, Minchin, O'Hara, Simpson, Solymos, Stevens, Szoecs, Wagner (bib46) 2018
Prosser, Nicol (bib51) 2012; 20
Voigt, Marushchak, Lamprecht, Jackowicz-Korczynski, Lindgren, Mastepanov, Granlund, Christensen, Tahvanainen, Martikainen, Biasi (bib68) 2017; 114
Leininger, Urich, Schloter, Schwark, Qi, Nicol, Prosser, Schuster, Schleper (bib34) 2006; 442
Marushchak, Pitkämäki, Koponen, Biasi, Seppälä, Martikainen (bib39) 2011; 17
Maljanen, Sigurdsson, Guðmundsson, Óskarsson, Huttunen, Martikainen (bib37) 2010; 7
Alves, Minh, Urich, von Haeseler, Schleper (bib4) 2018; 9
Ludwig, Teepe, de Gerenyu, Flessa (bib35) 2006; 38
Graef, Hestnes, Svenning, Frenzel (bib18) 2011; 3
Gil (bib16) 2017
Voigt, Lamprecht, Marushchak, Lind, Novakovskiy, Aurela, Martikainen, Biasi (bib67) 2017; 23
Nemergut, Townsend, Sattin, Freeman, Fierer, Neff, Bowman, Schadt, Weintraub, Schmidt (bib43) 2008; 10
Wickham (bib71) 2018
Takakai, Desyatkin, Lopez, Fedorov, Desyatkin, Hatano (bib64) 2008; 113
Lehtovirta-Morley, Verhamme, Nicol, Prosser (bib33) 2013; 62
Jung, Kim, Sinninghe Damste, Rijpstra, Madsen, Kim, Hong, Si, Kerou, Schleper, Rhee (bib27) 2016; 8
Pinheiro, Bates, DebRoy, Sarkar, R Core Team (bib50) 2018
Nykänen, Alm, Lang, Silvola, Martikainen (bib45) 1995; 22
Caporaso, Kuczynski, Stombaugh, Bittinger, Bushman, Costello, Fierer, Gonzalez Peña, Goodrich, Gordon, Huttley, Kelley, Knights, Koenig, Ley, Lozupone, McDonald, Muegge, Pirrung, Reeder, Sevinsky, Turnbaugh, Walters, Widmann, Yatsunenko, Zeneveld, Knight (bib10) 2010; 7
Gil, Pérez, Boering, Martikainen, Biasi (bib17) 2017; 31
Banerjee, Siciliano (bib5) 2012; 78
Zhu, Burger, Doane, Horwath (bib73) 2013; 110
Pärn (10.1016/j.soilbio.2019.107539_bib49) 2018; 9
Caporaso (10.1016/j.soilbio.2019.107539_bib10) 2010; 7
Christensen (10.1016/j.soilbio.2019.107539_bib11) 1999; 31
Isobe (10.1016/j.soilbio.2019.107539_bib25) 2018; 122
Hu (10.1016/j.soilbio.2019.107539_bib22) 2015; 39
Pinheiro (10.1016/j.soilbio.2019.107539_bib50)
Leininger (10.1016/j.soilbio.2019.107539_bib34) 2006; 442
Voigt (10.1016/j.soilbio.2019.107539_bib68) 2017; 114
Kits (10.1016/j.soilbio.2019.107539_bib30) 2017; 549
Rodionow (10.1016/j.soilbio.2019.107539_bib56) 2006; 135
Martikainen (10.1016/j.soilbio.2019.107539_bib38) 1993; 366
Kanakidou (10.1016/j.soilbio.2019.107539_bib28) 2016; 73
Kaverin (10.1016/j.soilbio.2019.107539_bib29) 2016; 49
Jung (10.1016/j.soilbio.2019.107539_bib27) 2016; 8
Prosser (10.1016/j.soilbio.2019.107539_bib51) 2012; 20
Callahan (10.1016/j.soilbio.2019.107539_bib9) 2016; 13
Pagés (10.1016/j.soilbio.2019.107539_bib47) 2017
Wickham (10.1016/j.soilbio.2019.107539_bib71)
Ludwig (10.1016/j.soilbio.2019.107539_bib35) 2006; 38
Maljanen (10.1016/j.soilbio.2019.107539_bib37) 2010; 7
Zhu-Barker (10.1016/j.soilbio.2019.107539_bib74) 2015; 126
Wild (10.1016/j.soilbio.2019.107539_bib72) 2015; 29
Marushchak (10.1016/j.soilbio.2019.107539_bib39) 2011; 17
Edgar (10.1016/j.soilbio.2019.107539_bib15) 2011; 27
Biasi (10.1016/j.soilbio.2019.107539_bib6) 2014; 17
Mettel (10.1016/j.soilbio.2019.107539_bib40) 2010; 76
Myhre (10.1016/j.soilbio.2019.107539_bib42) 2013
Ravishankara (10.1016/j.soilbio.2019.107539_bib53) 2009; 326
Reay (10.1016/j.soilbio.2019.107539_bib54) 2008; 1
Nykänen (10.1016/j.soilbio.2019.107539_bib45) 1995; 22
Lamb (10.1016/j.soilbio.2019.107539_bib32) 2011; 17
van Kessel (10.1016/j.soilbio.2019.107539_bib65) 2015; 528
R Core Team (10.1016/j.soilbio.2019.107539_bib52) 2018
Herrmann (10.1016/j.soilbio.2019.107539_bib20) 2012; 14
Sauder (10.1016/j.soilbio.2019.107539_bib57) 2017; 11
Nemergut (10.1016/j.soilbio.2019.107539_bib43) 2008; 10
Shen (10.1016/j.soilbio.2019.107539_bib60) 2013; 344
Takakai (10.1016/j.soilbio.2019.107539_bib64) 2008; 113
Wickham (10.1016/j.soilbio.2019.107539_bib69) 2007; 21
Voigt (10.1016/j.soilbio.2019.107539_bib67) 2017; 23
Kozlowski (10.1016/j.soilbio.2019.107539_bib31) 2016; 10
Palmer (10.1016/j.soilbio.2019.107539_bib48) 2012; 6
Alves (10.1016/j.soilbio.2019.107539_bib4) 2018; 9
Siciliano (10.1016/j.soilbio.2019.107539_bib61) 2009; 41
Gubry-Rangin (10.1016/j.soilbio.2019.107539_bib19) 2011; 108
Repo (10.1016/j.soilbio.2019.107539_bib55) 2009; 2
Inselsbacher (10.1016/j.soilbio.2019.107539_bib23) 2007; 175
Butterbach-Bahl (10.1016/j.soilbio.2019.107539_bib8) 2013; 368
Schaeffer (10.1016/j.soilbio.2019.107539_bib58) 2013; 19
Alves (10.1016/j.soilbio.2019.107539_bib2) 2019; 10
Daebeler (10.1016/j.soilbio.2019.107539_bib13) 2017; 107
Stopnisek (10.1016/j.soilbio.2019.107539_bib63) 2010; 76
Neuwirth (10.1016/j.soilbio.2019.107539_bib44)
Gil (10.1016/j.soilbio.2019.107539_bib16) 2017
Banerjee (10.1016/j.soilbio.2019.107539_bib5) 2012; 78
Booth (10.1016/j.soilbio.2019.107539_bib7) 2005; 75
Hink (10.1016/j.soilbio.2019.107539_bib21) 2018; 12
Altschul (10.1016/j.soilbio.2019.107539_bib1) 1990; 215
Graef (10.1016/j.soilbio.2019.107539_bib18) 2011; 3
IPCC (10.1016/j.soilbio.2019.107539_bib24) 2018
Ma (10.1016/j.soilbio.2019.107539_bib36) 2007; 39
Gil (10.1016/j.soilbio.2019.107539_bib17) 2017; 31
Lehtovirta-Morley (10.1016/j.soilbio.2019.107539_bib33) 2013; 62
Seppälä (10.1016/j.soilbio.2019.107539_bib59) 2003; 52
Daebeler (10.1016/j.soilbio.2019.107539_bib12) 2012; 3
Edgar (10.1016/j.soilbio.2019.107539_bib14) 2010; 26
van Lent (10.1016/j.soilbio.2019.107539_bib66) 2015; 12
Zhu (10.1016/j.soilbio.2019.107539_bib73) 2013; 110
Oksanen (10.1016/j.soilbio.2019.107539_bib46)
Alves (10.1016/j.soilbio.2019.107539_bib3) 2013; 7
Stieglmeier (10.1016/j.soilbio.2019.107539_bib62) 2013; 8
Wickham (10.1016/j.soilbio.2019.107539_bib70) 2009
Jia (10.1016/j.soilbio.2019.107539_bib26) 2009; 11
References_xml – volume: 108
  start-page: 21206
  year: 2011
  end-page: 21211
  ident: bib19
  article-title: Niche specialization of terrestrial archaeal ammonia oxidizers
  publication-title: Proceedings of National Academy of Sciences of USA
– volume: 10
  start-page: 1836
  year: 2016
  end-page: 1845
  ident: bib31
  article-title: Pathways and key intermediates required for obligate aerobic ammonia-dependent chemolithotrophy in bacteria and Thaumarchaeota
  publication-title: The ISME Journal
– volume: 75
  start-page: 139
  year: 2005
  end-page: 157
  ident: bib7
  article-title: Controls on nitrogen cycling in terrestrial ecosystems: a synthetic analysis of literature data
  publication-title: Ecological Monographs
– volume: 326
  start-page: 123
  year: 2009
  end-page: 125
  ident: bib53
  article-title: Nitrous oxide(N
  publication-title: Science
– volume: 110
  start-page: 6328
  year: 2013
  end-page: 6333
  ident: bib73
  article-title: Ammonia oxidation pathways and nitrifier denitrification are significant sources of N
  publication-title: Proceedings of National Academy of Sciences of USA
– volume: 114
  start-page: 6238
  year: 2017
  end-page: 6243
  ident: bib68
  article-title: Increased nitrous oxide emissions from Arctic peatlands after permafrost thaw
  publication-title: Proceedings of National Academy of Sciences of USA
– volume: 14
  start-page: 3013
  year: 2012
  end-page: 3025
  ident: bib20
  article-title: Predominance of thaumarchaeal ammonia oxidizer abundance and transcriptional activity in an acidic fen
  publication-title: Environmental Microbiology
– volume: 76
  start-page: 5996
  year: 2010
  end-page: 6000
  ident: bib40
  article-title: Extraction of mRNA from soil
  publication-title: Applied and Environmental Microbiology
– volume: 19
  start-page: 3529
  year: 2013
  end-page: 3539
  ident: bib58
  article-title: Soil-plant N processes in a High Arctic ecosystem, NW Greenland are altered by long-term experimental warming and higher rainfall
  publication-title: Global Change Biology
– volume: 135
  start-page: 49
  year: 2006
  end-page: 62
  ident: bib56
  article-title: Organic matter composition and potential trace gas production of permafrost soils in the forest tundra in northern Siberia
  publication-title: Geoderma
– year: 2017
  ident: bib47
  article-title: Biostrings: efficient manipulation of biological strings
  publication-title: R package version 2.46.0
– volume: 78
  start-page: 346
  year: 2012
  end-page: 353
  ident: bib5
  article-title: Factors driving potential ammonia oxidation in Canadian Arctic ecosystems: does spatial scale matter?
  publication-title: Applied and Environmental Microbiology
– volume: 3
  start-page: 352
  year: 2012
  ident: bib12
  article-title: Archaeal dominated ammonia-oxidizing communities in Icelandic grassland soils are moderately affected by long-term N fertilization and geothermal heating
  publication-title: Frontiers in Microbiology
– volume: 7
  start-page: 335
  year: 2010
  end-page: 336
  ident: bib10
  article-title: QIIME allows analysis of high-throughput community sequencing data
  publication-title: Nature Methods
– volume: 73
  start-page: 2039
  year: 2016
  end-page: 2047
  ident: bib28
  article-title: Past, present, and future atmospheric nitrogen deposition
  publication-title: Journal of the Atmospheric Sciences
– volume: 7
  start-page: 2711
  year: 2010
  end-page: 2738
  ident: bib37
  article-title: Greenhouse gas balances of managed peatlands in the Nordic countries - present knowledge and gaps
  publication-title: Biogeosciences
– volume: 10
  start-page: 3093
  year: 2008
  end-page: 3105
  ident: bib43
  article-title: The effects of chronic nitrogen fertilization on alpine tundra soil microbial communities: implications for carbon and nitrogen cycling
  publication-title: Environmental Microbiology
– year: 2018
  ident: bib71
  article-title: Stringr: simple, consistent wrappers for common string operations. R package version 1.3.0
– volume: 13
  start-page: 581
  year: 2016
  end-page: 583
  ident: bib9
  article-title: DADA2: high-resolution sample inference from Illumina amplicon data
  publication-title: Nature Methods
– volume: 126
  start-page: 251
  year: 2015
  end-page: 267
  ident: bib74
  article-title: The importance of abiotic reactions nitrous oxide production
  publication-title: Biochemistry
– volume: 10
  start-page: 1571
  year: 2019
  ident: bib2
  article-title: Ammonia Oxidation by the Arctic Terrestrial Thaumarchaeote Candidatus Nitrosocosmicus arcticus Is Stimulated by Increasing Temperatures.Front
  publication-title: Microbiol
– start-page: 32
  year: 2018
  ident: bib24
  article-title: Summary for Policymakers. In: global warming of 1.5°C. An IPCC Special Report on the impacts of global warming of 1.5°C above pre-industrial levels and related global greenhouse gas emission pathways
  publication-title: The Context of Strengthening the Global Response to the Threat of Climate Change, Sustainable Development, and Efforts to Eradicate Poverty [V. Masson-Delmotte
– volume: 38
  start-page: 3516
  year: 2006
  end-page: 3519
  ident: bib35
  article-title: CO
  publication-title: Soil Biology and Biochemistry
– volume: 41
  start-page: 1104
  year: 2009
  end-page: 1110
  ident: bib61
  article-title: Nitrifier dominance of Arctic soil nitrous oxide emissions arises due to fungal competition with denitrifiers for nitrate
  publication-title: Soil Biology and Biochemistry
– year: 2018
  ident: bib52
  article-title: R: A Language and Environment for Statistical Computing
– volume: 22
  start-page: 351
  year: 1995
  end-page: 357
  ident: bib45
  article-title: Emissions of CH
  publication-title: Journal of Biogeography
– volume: 31
  start-page: 172
  year: 2017
  end-page: 189
  ident: bib17
  article-title: Mechanisms responsible for high N
  publication-title: Global Biogeochemical Cycles
– volume: 122
  start-page: 220
  year: 2018
  end-page: 227
  ident: bib25
  article-title: Highly abundant acidophilic ammonia-oxidizing archaea causes high rates of nitrification and nitrate leaching in in nitrogen-saturated forest soils
  publication-title: Soil Biology and Biochemistry
– volume: 23
  start-page: 3121
  year: 2017
  end-page: 3138
  ident: bib67
  article-title: Warming of subarctic tundra increases emissions of all three important greenhouse gases - carbon dioxide, methane and nitrous oxide
  publication-title: Global Change Biology
– volume: 21
  start-page: 1
  year: 2007
  end-page: 20
  ident: bib69
  article-title: Reshaping data with the reshape package
  publication-title: Journal of Statistical Software
– volume: 76
  start-page: 7626
  year: 2010
  end-page: 7634
  ident: bib63
  article-title: ammonia ocidation in an acidic forest peat soil is not influenced by ammonia amendment
  publication-title: Applied and Environmental Microbiology
– year: 2017
  ident: bib16
  article-title: Microbial Processes Responsible for the High N2O Emissions from Sub-arctic Permafrost Peatlands and Tropical Soils as Determined by Stable Isotopes Approaches. Dissertations in Forestry and Natural Sciences
– volume: 9
  start-page: 1517
  year: 2018
  ident: bib4
  article-title: Unifying the global phylogeny and environmental distribution of ammonia-oxidizing archaea based on
  publication-title: Nature Communications
– volume: 344
  start-page: 121
  year: 2013
  end-page: 129
  ident: bib60
  article-title: Responses of the terrestrial ammonia-oxidising archaeon Ca.
  publication-title: FEMS Microbiology Letters
– volume: 528
  start-page: 555
  year: 2015
  end-page: 559
  ident: bib65
  article-title: Complete nitrification by a single microorganism
  publication-title: Nature
– volume: 49
  start-page: 498
  year: 2016
  end-page: 511
  ident: bib29
  article-title: Morphology and properties of the soils of permafrost peatlands in the southeast of the Bol’shezemel’skaya tundra
  publication-title: Eurasian Soil Science
– year: 2018
  ident: bib46
  article-title: vegan: community Ecology Package. R package version 2.4-6
– volume: 17
  start-page: 3187
  year: 2011
  end-page: 3194
  ident: bib32
  article-title: A high Arctic soil ecosystem resists long-term environmental manipulations
  publication-title: Global Change Biology
– volume: 9
  start-page: 1135
  year: 2018
  ident: bib49
  article-title: Nitrogen-rich organic soils under warm well- drained conditions are global nitrous oxide emission hotspots
  publication-title: Nature Communications
– year: 2013
  ident: bib42
  article-title: Anthropogenic and natural radiative forcing
  publication-title: Climate Change 2013 the Physical Science Basis
– volume: 1
  start-page: 430
  year: 2008
  end-page: 437
  ident: bib54
  article-title: Global nitrogen deposition and carbon sinks
  publication-title: Nature Geoscience
– volume: 52
  start-page: 141
  year: 2003
  end-page: 148
  ident: bib59
  article-title: Surface abrasion of palsas by wind action in Finnish Lapland
  publication-title: Geomorphology
– volume: 107
  start-page: 114
  year: 2017
  end-page: 124
  ident: bib13
  article-title: Soil warming and fertilization altered rates of nitrogen transformation processes and selected for adapted ammonia-oxidizing archaea in sub-arctic grassland soil
  publication-title: Soil Biology and Biochemistry
– volume: 11
  start-page: 1142
  year: 2017
  end-page: 1157
  ident: bib57
  article-title: Cultivation and characterization of Candidatus
  publication-title: The ISME Journal
– volume: 215
  start-page: 403
  year: 1990
  end-page: 410
  ident: bib1
  article-title: Basic local alignment search tool
  publication-title: Journal of Molecular Biology
– volume: 7
  start-page: 1620
  year: 2013
  end-page: 1631
  ident: bib3
  article-title: Nitrification rates in Arctic soils are associated with functionally distinct populations of ammonia oxidizing archaea
  publication-title: The ISME Journal
– year: 2014
  ident: bib44
  article-title: RColorBrewer: ColorBrewer Palettes. R package version 1.1-2
– year: 2018
  ident: bib50
  article-title: Nlme: linear and nonlinear mixed effects models. R package version 3.1-131.1
– volume: 175
  start-page: 311
  year: 2007
  end-page: 320
  ident: bib23
  article-title: Microbial activities and foliar uptake of nitrogen in the epiphytic bromeliad
  publication-title: New Phytologist
– volume: 27
  start-page: 2194
  year: 2011
  end-page: 2200
  ident: bib15
  article-title: UCHIME improves sensitivity and speed of chimera detection
  publication-title: BMC Bioinformatics
– volume: 6
  start-page: 1058
  year: 2012
  end-page: 1077
  ident: bib48
  article-title: Contrasting denitrifier communities relate to contrasting N
  publication-title: The ISME Journal
– volume: 442
  start-page: 806
  year: 2006
  end-page: 809
  ident: bib34
  article-title: Archaea predominate among ammonia-oxidizing prokaryotes in soils
  publication-title: Nature
– volume: 17
  start-page: 2601
  year: 2011
  end-page: 2614
  ident: bib39
  article-title: Hot spots for nitrous oxide emissions found in different types of permafrost peatlands
  publication-title: Global Change Biology
– volume: 3
  start-page: 466
  year: 2011
  end-page: 472
  ident: bib18
  article-title: The active methanotrophic community in a wetland from the high Arctic
  publication-title: Environmental Microbiology Reports
– volume: 29
  start-page: 567
  year: 2015
  end-page: 582
  ident: bib72
  article-title: Microbial nitrogen dynamics in organic and mineral soil horizons along a latitudinal transect in western Siberia
  publication-title: Global Biogeochemical Cycles
– volume: 31
  start-page: 637
  year: 1999
  end-page: 641
  ident: bib11
  article-title: Exchange of CH
  publication-title: Soil Biology and Biochemistry
– volume: 8
  start-page: 1135
  year: 2013
  end-page: 1146
  ident: bib62
  article-title: Aerobic nitrous oxide production through N-nitrosating hybrid formation in ammonia-oxidizing archaea
  publication-title: The ISME Journal
– volume: 39
  start-page: 2001
  year: 2007
  end-page: 2013
  ident: bib36
  article-title: Assessing the potential of ammonia oxidizing bacteria to produce nitrous oxide in soils of a high arctic lowland ecosystem on Devon Island, Canada
  publication-title: Soil Biology and Biochemistry
– volume: 17
  start-page: 112
  year: 2014
  end-page: 126
  ident: bib6
  article-title: Microbial respiration in arctic upland and peat soils as a source of atmospheric carbon dioxide
  publication-title: Ecosystems
– year: 2009
  ident: bib70
  article-title: ggplot2: Elegant Graphics for Data Analysis
– volume: 26
  start-page: 2460
  year: 2010
  end-page: 2461
  ident: bib14
  article-title: Search and clustering orders of magnitude faster than BLAST
  publication-title: BMC Bioinformatics
– volume: 12
  start-page: 1084
  year: 2018
  end-page: 1093
  ident: bib21
  article-title: The consequences of niche and physiological differentiation of archaeal and bacterial ammonia oxidisers for nitrous oxide emissions
  publication-title: The ISME Journal
– volume: 11
  start-page: 1658
  year: 2009
  end-page: 1671
  ident: bib26
  article-title: Bacteria rather than Archaea dominate microbial ammonia oxidation in an agricultural soil
  publication-title: Environmental Microbiology
– volume: 2
  start-page: 189
  year: 2009
  end-page: 192
  ident: bib55
  article-title: Large N
  publication-title: Nature Geoscience
– volume: 8
  start-page: 983
  year: 2016
  end-page: 992
  ident: bib27
  article-title: Hydrophobic ammonia-oxidizing archaeon of the
  publication-title: Environmental Microbiology Reports
– volume: 113
  start-page: G02002
  year: 2008
  ident: bib64
  article-title: CH
  publication-title: Journal of Geophysical Research: Biogeosciences
– volume: 20
  start-page: 523
  year: 2012
  end-page: 531
  ident: bib51
  article-title: Archaeal and bacterial ammonia-oxidisers in soil: the quest for niche specialisation and differentiation
  publication-title: Trends in Microbiology
– volume: 12
  start-page: 7299
  year: 2015
  end-page: 7313
  ident: bib66
  article-title: Reviews and syntheses: soil N
  publication-title: Biogeosciences
– volume: 62
  start-page: 129
  year: 2013
  end-page: 133
  ident: bib33
  article-title: Effect of nitrification inhibitors on the growth and activity of
  publication-title: Soil Biology and Biochemistry
– volume: 549
  start-page: 269
  year: 2017
  end-page: 272
  ident: bib30
  article-title: Kinetic analysis of a complete nitrifier reveals an oligotrophic lifestyle
  publication-title: Nature
– volume: 39
  start-page: 729
  year: 2015
  end-page: 749
  ident: bib22
  article-title: Microbial regulation of terrestrial nitrous oxide formation: understanding the biological pathways for prediction of emission rates
  publication-title: FEMS Microbiology Reviews 2015
– volume: 366
  start-page: 51
  year: 1993
  end-page: 53
  ident: bib38
  article-title: Effect of a lowered water-table on nitrous-oxide fluxes from northern peatlands
  publication-title: Nature
– volume: 368
  start-page: 20130122
  year: 2013
  ident: bib8
  article-title: Nitrous oxide emissions from soils: how well do we understand the processes and their controls?
  publication-title: Philosophical Transactions of the Royal Society of London Series B Biological Sciences
– volume: 442
  start-page: 806
  year: 2006
  ident: 10.1016/j.soilbio.2019.107539_bib34
  article-title: Archaea predominate among ammonia-oxidizing prokaryotes in soils
  publication-title: Nature
  doi: 10.1038/nature04983
– ident: 10.1016/j.soilbio.2019.107539_bib44
– volume: 108
  start-page: 21206
  year: 2011
  ident: 10.1016/j.soilbio.2019.107539_bib19
  article-title: Niche specialization of terrestrial archaeal ammonia oxidizers
  publication-title: Proceedings of National Academy of Sciences of USA
  doi: 10.1073/pnas.1109000108
– volume: 62
  start-page: 129
  year: 2013
  ident: 10.1016/j.soilbio.2019.107539_bib33
  article-title: Effect of nitrification inhibitors on the growth and activity of Nitrosotalea devanaterra in culture and soil
  publication-title: Soil Biology and Biochemistry
  doi: 10.1016/j.soilbio.2013.01.020
– volume: 39
  start-page: 2001
  year: 2007
  ident: 10.1016/j.soilbio.2019.107539_bib36
  article-title: Assessing the potential of ammonia oxidizing bacteria to produce nitrous oxide in soils of a high arctic lowland ecosystem on Devon Island, Canada
  publication-title: Soil Biology and Biochemistry
  doi: 10.1016/j.soilbio.2007.03.001
– volume: 29
  start-page: 567
  year: 2015
  ident: 10.1016/j.soilbio.2019.107539_bib72
  article-title: Microbial nitrogen dynamics in organic and mineral soil horizons along a latitudinal transect in western Siberia
  publication-title: Global Biogeochemical Cycles
  doi: 10.1002/2015GB005084
– volume: 366
  start-page: 51
  year: 1993
  ident: 10.1016/j.soilbio.2019.107539_bib38
  article-title: Effect of a lowered water-table on nitrous-oxide fluxes from northern peatlands
  publication-title: Nature
  doi: 10.1038/366051a0
– volume: 2
  start-page: 189
  year: 2009
  ident: 10.1016/j.soilbio.2019.107539_bib55
  article-title: Large N2O emissions from cryoturbated peat soil in tundra
  publication-title: Nature Geoscience
  doi: 10.1038/ngeo434
– volume: 19
  start-page: 3529
  year: 2013
  ident: 10.1016/j.soilbio.2019.107539_bib58
  article-title: Soil-plant N processes in a High Arctic ecosystem, NW Greenland are altered by long-term experimental warming and higher rainfall
  publication-title: Global Change Biology
  doi: 10.1111/gcb.12318
– volume: 76
  start-page: 7626
  year: 2010
  ident: 10.1016/j.soilbio.2019.107539_bib63
  article-title: Thaumarchaeal ammonia ocidation in an acidic forest peat soil is not influenced by ammonia amendment
  publication-title: Applied and Environmental Microbiology
  doi: 10.1128/AEM.00595-10
– volume: 215
  start-page: 403
  year: 1990
  ident: 10.1016/j.soilbio.2019.107539_bib1
  article-title: Basic local alignment search tool
  publication-title: Journal of Molecular Biology
  doi: 10.1016/S0022-2836(05)80360-2
– volume: 8
  start-page: 983
  year: 2016
  ident: 10.1016/j.soilbio.2019.107539_bib27
  article-title: Hydrophobic ammonia-oxidizing archaeon of the Nitrosocosmicus clade isolated from coal tar-contaminated sediment
  publication-title: Environmental Microbiology Reports
  doi: 10.1111/1758-2229.12477
– volume: 1
  start-page: 430
  year: 2008
  ident: 10.1016/j.soilbio.2019.107539_bib54
  article-title: Global nitrogen deposition and carbon sinks
  publication-title: Nature Geoscience
  doi: 10.1038/ngeo230
– volume: 75
  start-page: 139
  year: 2005
  ident: 10.1016/j.soilbio.2019.107539_bib7
  article-title: Controls on nitrogen cycling in terrestrial ecosystems: a synthetic analysis of literature data
  publication-title: Ecological Monographs
  doi: 10.1890/04-0988
– volume: 7
  start-page: 335
  year: 2010
  ident: 10.1016/j.soilbio.2019.107539_bib10
  article-title: QIIME allows analysis of high-throughput community sequencing data
  publication-title: Nature Methods
  doi: 10.1038/nmeth.f.303
– volume: 11
  start-page: 1142
  year: 2017
  ident: 10.1016/j.soilbio.2019.107539_bib57
  article-title: Cultivation and characterization of Candidatus Nitrosocosmicus exaquare, an ammonia-oxidizing archaeon from a municipal wastewater treatment system
  publication-title: The ISME Journal
  doi: 10.1038/ismej.2016.192
– volume: 76
  start-page: 5996
  year: 2010
  ident: 10.1016/j.soilbio.2019.107539_bib40
  article-title: Extraction of mRNA from soil
  publication-title: Applied and Environmental Microbiology
  doi: 10.1128/AEM.03047-09
– volume: 12
  start-page: 1084
  year: 2018
  ident: 10.1016/j.soilbio.2019.107539_bib21
  article-title: The consequences of niche and physiological differentiation of archaeal and bacterial ammonia oxidisers for nitrous oxide emissions
  publication-title: The ISME Journal
  doi: 10.1038/s41396-017-0025-5
– volume: 11
  start-page: 1658
  year: 2009
  ident: 10.1016/j.soilbio.2019.107539_bib26
  article-title: Bacteria rather than Archaea dominate microbial ammonia oxidation in an agricultural soil
  publication-title: Environmental Microbiology
  doi: 10.1111/j.1462-2920.2009.01891.x
– volume: 52
  start-page: 141
  year: 2003
  ident: 10.1016/j.soilbio.2019.107539_bib59
  article-title: Surface abrasion of palsas by wind action in Finnish Lapland
  publication-title: Geomorphology
  doi: 10.1016/S0169-555X(02)00254-4
– volume: 9
  start-page: 1517
  year: 2018
  ident: 10.1016/j.soilbio.2019.107539_bib4
  article-title: Unifying the global phylogeny and environmental distribution of ammonia-oxidizing archaea based on amoA genes
  publication-title: Nature Communications
  doi: 10.1038/s41467-018-03861-1
– year: 2017
  ident: 10.1016/j.soilbio.2019.107539_bib47
  article-title: Biostrings: efficient manipulation of biological strings
  publication-title: R package version 2.46.0
– volume: 126
  start-page: 251
  year: 2015
  ident: 10.1016/j.soilbio.2019.107539_bib74
  article-title: The importance of abiotic reactions nitrous oxide production
  publication-title: Biochemistry
– volume: 49
  start-page: 498
  year: 2016
  ident: 10.1016/j.soilbio.2019.107539_bib29
  article-title: Morphology and properties of the soils of permafrost peatlands in the southeast of the Bol’shezemel’skaya tundra
  publication-title: Eurasian Soil Science
  doi: 10.1134/S1064229316050069
– volume: 344
  start-page: 121
  year: 2013
  ident: 10.1016/j.soilbio.2019.107539_bib60
  article-title: Responses of the terrestrial ammonia-oxidising archaeon Ca. Nitrososphaera viennensis and the ammonia-oxidising bacterium Nitrosospira multiformis to nitrification inhibitors
  publication-title: FEMS Microbiology Letters
  doi: 10.1111/1574-6968.12164
– volume: 26
  start-page: 2460
  year: 2010
  ident: 10.1016/j.soilbio.2019.107539_bib14
  article-title: Search and clustering orders of magnitude faster than BLAST
  publication-title: BMC Bioinformatics
  doi: 10.1093/bioinformatics/btq461
– volume: 9
  start-page: 1135
  year: 2018
  ident: 10.1016/j.soilbio.2019.107539_bib49
  article-title: Nitrogen-rich organic soils under warm well- drained conditions are global nitrous oxide emission hotspots
  publication-title: Nature Communications
  doi: 10.1038/s41467-018-03540-1
– volume: 17
  start-page: 112
  year: 2014
  ident: 10.1016/j.soilbio.2019.107539_bib6
  article-title: Microbial respiration in arctic upland and peat soils as a source of atmospheric carbon dioxide
  publication-title: Ecosystems
  doi: 10.1007/s10021-013-9710-z
– volume: 7
  start-page: 2711
  year: 2010
  ident: 10.1016/j.soilbio.2019.107539_bib37
  article-title: Greenhouse gas balances of managed peatlands in the Nordic countries - present knowledge and gaps
  publication-title: Biogeosciences
  doi: 10.5194/bg-7-2711-2010
– volume: 14
  start-page: 3013
  year: 2012
  ident: 10.1016/j.soilbio.2019.107539_bib20
  article-title: Predominance of thaumarchaeal ammonia oxidizer abundance and transcriptional activity in an acidic fen
  publication-title: Environmental Microbiology
  doi: 10.1111/j.1462-2920.2012.02882.x
– year: 2013
  ident: 10.1016/j.soilbio.2019.107539_bib42
  article-title: Anthropogenic and natural radiative forcing
– volume: 10
  start-page: 3093
  year: 2008
  ident: 10.1016/j.soilbio.2019.107539_bib43
  article-title: The effects of chronic nitrogen fertilization on alpine tundra soil microbial communities: implications for carbon and nitrogen cycling
  publication-title: Environmental Microbiology
  doi: 10.1111/j.1462-2920.2008.01735.x
– volume: 21
  start-page: 1
  year: 2007
  ident: 10.1016/j.soilbio.2019.107539_bib69
  article-title: Reshaping data with the reshape package
  publication-title: Journal of Statistical Software
  doi: 10.18637/jss.v021.i12
– volume: 368
  start-page: 20130122
  year: 2013
  ident: 10.1016/j.soilbio.2019.107539_bib8
  article-title: Nitrous oxide emissions from soils: how well do we understand the processes and their controls?
  publication-title: Philosophical Transactions of the Royal Society of London Series B Biological Sciences
  doi: 10.1098/rstb.2013.0122
– volume: 528
  start-page: 555
  year: 2015
  ident: 10.1016/j.soilbio.2019.107539_bib65
  article-title: Complete nitrification by a single microorganism
  publication-title: Nature
  doi: 10.1038/nature16459
– volume: 12
  start-page: 7299
  year: 2015
  ident: 10.1016/j.soilbio.2019.107539_bib66
  article-title: Reviews and syntheses: soil N2O and NO emissions from land use and land-use change in the tropics and subtropics: a meta-analysis
  publication-title: Biogeosciences
  doi: 10.5194/bg-12-7299-2015
– volume: 7
  start-page: 1620
  year: 2013
  ident: 10.1016/j.soilbio.2019.107539_bib3
  article-title: Nitrification rates in Arctic soils are associated with functionally distinct populations of ammonia oxidizing archaea
  publication-title: The ISME Journal
  doi: 10.1038/ismej.2013.35
– volume: 10
  start-page: 1571
  year: 2019
  ident: 10.1016/j.soilbio.2019.107539_bib2
  article-title: Ammonia Oxidation by the Arctic Terrestrial Thaumarchaeote Candidatus Nitrosocosmicus arcticus Is Stimulated by Increasing Temperatures.Front
  publication-title: Microbiol
– volume: 31
  start-page: 172
  year: 2017
  ident: 10.1016/j.soilbio.2019.107539_bib17
  article-title: Mechanisms responsible for high N2O emissions from subarctic permafrost peatlands studied via stable isotope techniques
  publication-title: Global Biogeochemical Cycles
  doi: 10.1002/2015GB005370
– volume: 326
  start-page: 123
  year: 2009
  ident: 10.1016/j.soilbio.2019.107539_bib53
  article-title: Nitrous oxide(N2O): the dominant ozone-depleting substance emitted in the 21st century
  publication-title: Science
  doi: 10.1126/science.1176985
– year: 2009
  ident: 10.1016/j.soilbio.2019.107539_bib70
– volume: 6
  start-page: 1058
  year: 2012
  ident: 10.1016/j.soilbio.2019.107539_bib48
  article-title: Contrasting denitrifier communities relate to contrasting N2O emission patterns from acidic peat soils in arctic tundra
  publication-title: The ISME Journal
  doi: 10.1038/ismej.2011.172
– ident: 10.1016/j.soilbio.2019.107539_bib71
– start-page: 32
  year: 2018
  ident: 10.1016/j.soilbio.2019.107539_bib24
  article-title: Summary for Policymakers. In: global warming of 1.5°C. An IPCC Special Report on the impacts of global warming of 1.5°C above pre-industrial levels and related global greenhouse gas emission pathways
– volume: 3
  start-page: 466
  year: 2011
  ident: 10.1016/j.soilbio.2019.107539_bib18
  article-title: The active methanotrophic community in a wetland from the high Arctic
  publication-title: Environmental Microbiology Reports
  doi: 10.1111/j.1758-2229.2010.00237.x
– volume: 8
  start-page: 1135
  year: 2013
  ident: 10.1016/j.soilbio.2019.107539_bib62
  article-title: Aerobic nitrous oxide production through N-nitrosating hybrid formation in ammonia-oxidizing archaea
  publication-title: The ISME Journal
  doi: 10.1038/ismej.2013.220
– volume: 113
  start-page: G02002
  year: 2008
  ident: 10.1016/j.soilbio.2019.107539_bib64
  article-title: CH4 and N2O emissions from a forest-alas ecosystem in the permafrost taiga forest region, eastern Siberia, Russia
  publication-title: Journal of Geophysical Research: Biogeosciences
  doi: 10.1029/2007JG000521
– volume: 38
  start-page: 3516
  year: 2006
  ident: 10.1016/j.soilbio.2019.107539_bib35
  article-title: CO2 and N2O emissions from gleyic soils in the Russian tundra and a German forest during freeze-thaw periods – a microcosm study
  publication-title: Soil Biology and Biochemistry
  doi: 10.1016/j.soilbio.2006.06.006
– volume: 78
  start-page: 346
  year: 2012
  ident: 10.1016/j.soilbio.2019.107539_bib5
  article-title: Factors driving potential ammonia oxidation in Canadian Arctic ecosystems: does spatial scale matter?
  publication-title: Applied and Environmental Microbiology
  doi: 10.1128/AEM.06132-11
– volume: 122
  start-page: 220
  year: 2018
  ident: 10.1016/j.soilbio.2019.107539_bib25
  article-title: Highly abundant acidophilic ammonia-oxidizing archaea causes high rates of nitrification and nitrate leaching in in nitrogen-saturated forest soils
  publication-title: Soil Biology and Biochemistry
  doi: 10.1016/j.soilbio.2018.04.021
– volume: 135
  start-page: 49
  year: 2006
  ident: 10.1016/j.soilbio.2019.107539_bib56
  article-title: Organic matter composition and potential trace gas production of permafrost soils in the forest tundra in northern Siberia
  publication-title: Geoderma
  doi: 10.1016/j.geoderma.2005.10.008
– volume: 13
  start-page: 581
  year: 2016
  ident: 10.1016/j.soilbio.2019.107539_bib9
  article-title: DADA2: high-resolution sample inference from Illumina amplicon data
  publication-title: Nature Methods
  doi: 10.1038/nmeth.3869
– volume: 22
  start-page: 351
  year: 1995
  ident: 10.1016/j.soilbio.2019.107539_bib45
  article-title: Emissions of CH4, N2O and CO2 from a virgil fen and a fen drained for grassland in Finland
  publication-title: Journal of Biogeography
  doi: 10.2307/2845930
– volume: 17
  start-page: 3187
  year: 2011
  ident: 10.1016/j.soilbio.2019.107539_bib32
  article-title: A high Arctic soil ecosystem resists long-term environmental manipulations
  publication-title: Global Change Biology
  doi: 10.1111/j.1365-2486.2011.02431.x
– volume: 3
  start-page: 352
  year: 2012
  ident: 10.1016/j.soilbio.2019.107539_bib12
  article-title: Archaeal dominated ammonia-oxidizing communities in Icelandic grassland soils are moderately affected by long-term N fertilization and geothermal heating
  publication-title: Frontiers in Microbiology
  doi: 10.3389/fmicb.2012.00352
– volume: 41
  start-page: 1104
  year: 2009
  ident: 10.1016/j.soilbio.2019.107539_bib61
  article-title: Nitrifier dominance of Arctic soil nitrous oxide emissions arises due to fungal competition with denitrifiers for nitrate
  publication-title: Soil Biology and Biochemistry
  doi: 10.1016/j.soilbio.2009.02.024
– volume: 175
  start-page: 311
  year: 2007
  ident: 10.1016/j.soilbio.2019.107539_bib23
  article-title: Microbial activities and foliar uptake of nitrogen in the epiphytic bromeliad Vriesea gigantea
  publication-title: New Phytologist
  doi: 10.1111/j.1469-8137.2007.02098.x
– volume: 23
  start-page: 3121
  year: 2017
  ident: 10.1016/j.soilbio.2019.107539_bib67
  article-title: Warming of subarctic tundra increases emissions of all three important greenhouse gases - carbon dioxide, methane and nitrous oxide
  publication-title: Global Change Biology
  doi: 10.1111/gcb.13563
– year: 2017
  ident: 10.1016/j.soilbio.2019.107539_bib16
– volume: 110
  start-page: 6328
  year: 2013
  ident: 10.1016/j.soilbio.2019.107539_bib73
  article-title: Ammonia oxidation pathways and nitrifier denitrification are significant sources of N2O and NO under low oxygen availability
  publication-title: Proceedings of National Academy of Sciences of USA
  doi: 10.1073/pnas.1219993110
– volume: 107
  start-page: 114
  year: 2017
  ident: 10.1016/j.soilbio.2019.107539_bib13
  article-title: Soil warming and fertilization altered rates of nitrogen transformation processes and selected for adapted ammonia-oxidizing archaea in sub-arctic grassland soil
  publication-title: Soil Biology and Biochemistry
  doi: 10.1016/j.soilbio.2016.12.013
– volume: 10
  start-page: 1836
  year: 2016
  ident: 10.1016/j.soilbio.2019.107539_bib31
  article-title: Pathways and key intermediates required for obligate aerobic ammonia-dependent chemolithotrophy in bacteria and Thaumarchaeota
  publication-title: The ISME Journal
  doi: 10.1038/ismej.2016.2
– volume: 20
  start-page: 523
  year: 2012
  ident: 10.1016/j.soilbio.2019.107539_bib51
  article-title: Archaeal and bacterial ammonia-oxidisers in soil: the quest for niche specialisation and differentiation
  publication-title: Trends in Microbiology
  doi: 10.1016/j.tim.2012.08.001
– year: 2018
  ident: 10.1016/j.soilbio.2019.107539_bib52
– volume: 39
  start-page: 729
  year: 2015
  ident: 10.1016/j.soilbio.2019.107539_bib22
  article-title: Microbial regulation of terrestrial nitrous oxide formation: understanding the biological pathways for prediction of emission rates
  publication-title: FEMS Microbiology Reviews 2015
  doi: 10.1093/femsre/fuv021
– volume: 73
  start-page: 2039
  year: 2016
  ident: 10.1016/j.soilbio.2019.107539_bib28
  article-title: Past, present, and future atmospheric nitrogen deposition
  publication-title: Journal of the Atmospheric Sciences
  doi: 10.1175/JAS-D-15-0278.1
– volume: 17
  start-page: 2601
  year: 2011
  ident: 10.1016/j.soilbio.2019.107539_bib39
  article-title: Hot spots for nitrous oxide emissions found in different types of permafrost peatlands
  publication-title: Global Change Biology
  doi: 10.1111/j.1365-2486.2011.02442.x
– volume: 114
  start-page: 6238
  year: 2017
  ident: 10.1016/j.soilbio.2019.107539_bib68
  article-title: Increased nitrous oxide emissions from Arctic peatlands after permafrost thaw
  publication-title: Proceedings of National Academy of Sciences of USA
  doi: 10.1073/pnas.1702902114
– ident: 10.1016/j.soilbio.2019.107539_bib46
– volume: 31
  start-page: 637
  year: 1999
  ident: 10.1016/j.soilbio.2019.107539_bib11
  article-title: Exchange of CH4 and N2O in a subarctic heath soil: effects of inorganic N and P and amino acid addition
  publication-title: Soil Biology and Biochemistry
  doi: 10.1016/S0038-0717(98)00166-7
– volume: 27
  start-page: 2194
  year: 2011
  ident: 10.1016/j.soilbio.2019.107539_bib15
  article-title: UCHIME improves sensitivity and speed of chimera detection
  publication-title: BMC Bioinformatics
  doi: 10.1093/bioinformatics/btr381
– volume: 549
  start-page: 269
  year: 2017
  ident: 10.1016/j.soilbio.2019.107539_bib30
  article-title: Kinetic analysis of a complete nitrifier reveals an oligotrophic lifestyle
  publication-title: Nature
  doi: 10.1038/nature23679
– ident: 10.1016/j.soilbio.2019.107539_bib50
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Snippet Bare peat surfaces created by frost action and wind erosion in permafrost peatlands have been shown to emit high amounts of nitrous oxide (N2O). With global...
Bare peat surfaces created by frost action and wind erosion in permafrost peatlands show high nitrous oxide (N2O) emissions. With global warming, emissions of...
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SubjectTerms ammonia
Ammonia oxidation
AOA
Archaea
Arctic region
Climate change
ecosystems
frigid soils
frost
global warming
greenhouse gas emissions
greenhouse gases
nitrates
nitrification
nitrites
nitrogen
nitrous oxide
nitrous oxide production
oxidants
oxidation
peat
peat soils
peatlands
Permafrost
phylotype
wind erosion
Title Archaeal nitrification is a key driver of high nitrous oxide emissions from arctic peatlands
URI https://dx.doi.org/10.1016/j.soilbio.2019.107539
https://www.proquest.com/docview/2305245263
Volume 137
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