Archaeal nitrification is a key driver of high nitrous oxide emissions from arctic peatlands
Bare peat surfaces created by frost action and wind erosion in permafrost peatlands have been shown to emit high amounts of nitrous oxide (N2O). With global warming, emissions of this highly potent greenhouse gas are expected to increase in Arctic permafrost peatlands. In natural unmanaged soils wit...
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Published in | Soil biology & biochemistry Vol. 137; p. 107539 |
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Main Authors | , , , , , , , , , |
Format | Journal Article |
Language | English |
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Elsevier Ltd
01.10.2019
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Abstract | Bare peat surfaces created by frost action and wind erosion in permafrost peatlands have been shown to emit high amounts of nitrous oxide (N2O). With global warming, emissions of this highly potent greenhouse gas are expected to increase in Arctic permafrost peatlands. In natural unmanaged soils with low nitrogen deposition, such as Arctic soils, nitrification is the main source of nitrite and nitrate, and thus a key driver of N2O emissions. Here, we investigated nitrification, ammonia oxidizer populations and N2O production in vegetated and bare peat soils from four distant Arctic geographic locations. Through a combination of molecular analyses and group-specific inhibitor assays, we show that ammonia oxidation, the first step in nitrification, is mainly performed by ammonia-oxidizing archaea (AOA). All soils from different locations, including bare peat soils with high N2O emissions, harbored only two AOA phylotypes, including an organism closely related to Ca. Nitrosocosmicus spp. This indicates that high N2O emissions from these ecosystems are primarily fueled by nitrification mediated by very few archaeal species. To our knowledge, arctic peat soils in this study are the first natural environments where high N2O emissions have been linked to AOA. Any changes in archaeal nitrification induced by global warming will therefore impact on N2O emissions from the permafrost peatlands.
•Ammonia-oxidizing archaea (AOA) are driving nitrification in Arctic peat soils which have high N2O emissions.•Arctic peat soils have with only two AOA phylotypes surprisingly low diversity of AOA.•AOA are important key species for nitrification in Arctic peat soils. |
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AbstractList | Bare peat surfaces created by frost action and wind erosion in permafrost peatlands show high nitrous oxide (N2O) emissions. With global warming, emissions of this highly potent greenhouse gas are expected to increase in Arctic permafrost peatlands. In natural unmanaged soils with low nitrogen deposition, such as Arctic soils, nitrification is the main source of nitrite and nitrate, thus a key driver of N2O emissions. Here, we investigated nitrification, ammonia oxidizer populations and N2O production in vegetated and bare peat soils from four distant Arctic locations. Through a combination of molecular analyses and group-specific inhibitor assays, we show that ammonia oxidation, the first step in nitrification, is mainly performed by ammonia-oxidizing archaea (AOA). All soils from different geographical locations, including bare peat soils with high N2O emissions, harbored only two AOA phylotypes, including an organism closely related to Ca. Nitrosocosmicus spp. This indicates that high N2O emissions from these ecosystems are primarily fueled by nitrification mediated by very few archaeal species. To our knowledge, Arctic peat soils in this study are the first natural environments where high N2O emissions have been linked to AOA. Any changes in archaeal nitrification induced by global warming will therefore impact on N2O emissions from the permafrost peatlands. Bare peat surfaces created by frost action and wind erosion in permafrost peatlands have been shown to emit high amounts of nitrous oxide (N2O). With global warming, emissions of this highly potent greenhouse gas are expected to increase in Arctic permafrost peatlands. In natural unmanaged soils with low nitrogen deposition, such as Arctic soils, nitrification is the main source of nitrite and nitrate, and thus a key driver of N2O emissions. Here, we investigated nitrification, ammonia oxidizer populations and N2O production in vegetated and bare peat soils from four distant Arctic geographic locations. Through a combination of molecular analyses and group-specific inhibitor assays, we show that ammonia oxidation, the first step in nitrification, is mainly performed by ammonia-oxidizing archaea (AOA). All soils from different locations, including bare peat soils with high N2O emissions, harbored only two AOA phylotypes, including an organism closely related to Ca. Nitrosocosmicus spp. This indicates that high N2O emissions from these ecosystems are primarily fueled by nitrification mediated by very few archaeal species. To our knowledge, arctic peat soils in this study are the first natural environments where high N2O emissions have been linked to AOA. Any changes in archaeal nitrification induced by global warming will therefore impact on N2O emissions from the permafrost peatlands. •Ammonia-oxidizing archaea (AOA) are driving nitrification in Arctic peat soils which have high N2O emissions.•Arctic peat soils have with only two AOA phylotypes surprisingly low diversity of AOA.•AOA are important key species for nitrification in Arctic peat soils. |
ArticleNumber | 107539 |
Author | Bhattarai, Hem R. Lamprecht, Richard E. Biasi, Christina Siljanen, Henri M.P. Bagnoud, Alexandre Marushchak, Maija E. Alves, Ricardo J.E. Schleper, Christa Ronkainen, Jussi G. Martikainen, Pertti J. |
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Cites_doi | 10.1038/nature04983 10.1073/pnas.1109000108 10.1016/j.soilbio.2013.01.020 10.1016/j.soilbio.2007.03.001 10.1002/2015GB005084 10.1038/366051a0 10.1038/ngeo434 10.1111/gcb.12318 10.1128/AEM.00595-10 10.1016/S0022-2836(05)80360-2 10.1111/1758-2229.12477 10.1038/ngeo230 10.1890/04-0988 10.1038/nmeth.f.303 10.1038/ismej.2016.192 10.1128/AEM.03047-09 10.1038/s41396-017-0025-5 10.1111/j.1462-2920.2009.01891.x 10.1016/S0169-555X(02)00254-4 10.1038/s41467-018-03861-1 10.1134/S1064229316050069 10.1111/1574-6968.12164 10.1093/bioinformatics/btq461 10.1038/s41467-018-03540-1 10.1007/s10021-013-9710-z 10.5194/bg-7-2711-2010 10.1111/j.1462-2920.2012.02882.x 10.1111/j.1462-2920.2008.01735.x 10.18637/jss.v021.i12 10.1098/rstb.2013.0122 10.1038/nature16459 10.5194/bg-12-7299-2015 10.1038/ismej.2013.35 10.1002/2015GB005370 10.1126/science.1176985 10.1038/ismej.2011.172 10.1111/j.1758-2229.2010.00237.x 10.1038/ismej.2013.220 10.1029/2007JG000521 10.1016/j.soilbio.2006.06.006 10.1128/AEM.06132-11 10.1016/j.soilbio.2018.04.021 10.1016/j.geoderma.2005.10.008 10.1038/nmeth.3869 10.2307/2845930 10.1111/j.1365-2486.2011.02431.x 10.3389/fmicb.2012.00352 10.1016/j.soilbio.2009.02.024 10.1111/j.1469-8137.2007.02098.x 10.1111/gcb.13563 10.1073/pnas.1219993110 10.1016/j.soilbio.2016.12.013 10.1038/ismej.2016.2 10.1016/j.tim.2012.08.001 10.1093/femsre/fuv021 10.1175/JAS-D-15-0278.1 10.1111/j.1365-2486.2011.02442.x 10.1073/pnas.1702902114 10.1016/S0038-0717(98)00166-7 10.1093/bioinformatics/btr381 10.1038/nature23679 |
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References | Booth, Stark, Rastetter (bib7) 2005; 75 Schaeffer, Sharp, Schimel, Welker (bib58) 2013; 19 Neuwirth (bib44) 2014 Palmer, Biasi, Horn (bib48) 2012; 6 Gubry-Rangin, Hai, Quince, Engel, Thomson, James, Schloter, Griffiths, Prosser, Nicol (bib19) 2011; 108 Myhre, Shindell, Bréon, Collins, Fuglestvedt, Huang, Koch, Lamarque, Lee, Mendoza, Nakajima, Robock, Stephens, Takemura, Zhang (bib42) 2013 Lamb, Han, Lanoil, Henry, Brummell, Banerjee (bib32) 2011; 17 R Core Team (bib52) 2018 Repo, Susiluoto, Lind, Jokinen, Elsakov, Biasi, Virtanen, Martikainen (bib55) 2009; 2 Jia, Conrad (bib26) 2009; 11 Pagés, Aboyoun, Gentleman, DebRoy (bib47) 2017 Kanakidou, Myriokefalitakis, Daskalakisa, Fanourgakis (bib28) 2016; 73 Kits, Sedlacek, Lebedeva, Han, Bulaev, Pjevac, Daebeler, Romano, Albertsen, Stein, Daims, Wagner (bib30) 2017; 549 Wickham (bib69) 2007; 21 Edgar (bib14) 2010; 26 Herrmann, Hädrich, Küsel (bib20) 2012; 14 Inselsbacher, Cambui, Richter, Stange, Mercier, Wanek (bib23) 2007; 175 Zhu-Barker, Cavazos, Ostrom, Horwath, Glass (bib74) 2015; 126 Christensen, Michelsen, Jonasson (bib11) 1999; 31 Kozlowski, Stieglmeier, Schleper, Klotz, Stein (bib31) 2016; 10 Ravishankara, Daniel, Portmann (bib53) 2009; 326 Stopnisek, Gubry-Rangin, Höfferle, Nicol, Mandic-Mulec, Prosser (bib63) 2010; 76 van Lent, Hergoualc’h, Verchot (bib66) 2015; 12 Alves, Wanek, Zappe, Richter, Svenning, Schleper, Urich (bib3) 2013; 7 Altschul, Gish, Miller, Myers, Lipman (bib1) 1990; 215 Hu, Chen, He (bib22) 2015; 39 Seppälä (bib59) 2003; 52 Reay, Dentener, Smith, Grace, Feely (bib54) 2008; 1 Isobe, Ikutani, Fang, Yoh, Mo, Suwa, Yoshida, Senoo, Otsuka, Koba (bib25) 2018; 122 Mettel, Kim, Shrestha, Liesack (bib40) 2010; 76 van Kessel, Speth, Albertsen, Nielsen, Op den Camp, Kartal, Jetten, Lücker (bib65) 2015; 528 Daebeler, Bodelier, Hefting, Rütting, Laanbroek (bib13) 2017; 107 IPCC (bib24) 2018 Martikainen, Nykänen, Crill, Silvola (bib38) 1993; 366 Hink, Gubry-Rangin, Nicol, Prosser (bib21) 2018; 12 Alves, Kerou, Zappe, Bittner, Abby, Schmidt, Pfeifer (bib2) 2019; 10 Ma, Schautz, Fishback, Bedard-Haughn, Farrell, Siciliano (bib36) 2007; 39 Wickham (bib70) 2009 Pärn, Verhoeva, Butterbach-Bahl, Dise, Ullah, Aasa, Egorov, Espenber, Järveoja, Jauhiainen, Kasak, Klemedtsson, Kull, Laggoun-Défarge, Lapshina, Lohila, Lõhmus, Maddison, Mitsch, Müller, Niinimets, Osborne, Pae, Salm, Sgouridis, Sohar, Soosaar, Storey, Teemusk, Tenywa, Tournebize, Truu, Veber, Villa, Sann Zaw, Mander (bib49) 2018; 9 Wild, Schnecker, Knoltsch, Takriti, Mooshammer, Gentsch, Mikutta, Eloy Alves (bib72) 2015; 29 Rodionow, Flessa, Kazansky, Guggenberger (bib56) 2006; 135 Stieglmeier, Mooshammer, Kitzler, Wanek, Zechmeister-Boltenstern, Richter, Schleper (bib62) 2013; 8 Sauder, Albertsen, Engel, Schwarz, Nielsen, Wagner, Neufeld (bib57) 2017; 11 Biasi, Jokinen, Marushchak, Hämäläinen, Trubnikova, Oinonen, Martikainen (bib6) 2014; 17 Butterbach-Bahl, Baggs, Dannenmann, Kiese, Zechmeister-Boltenstern (bib8) 2013; 368 Kaverin, Pastukhov, Lapteva, Biasi, Marushchak, Martikainen (bib29) 2016; 49 Daebeler, Abell, Bodelier, Bodrossy, Frampton, Hefting, Laanbroek (bib12) 2012; 3 Edgar, Haas, Clemente, Quince, Knight (bib15) 2011; 27 Shen, Stieglmeier, Dai, Urich, Schleper (bib60) 2013; 344 Siciliano, Ma, Ferguson, Farrell (bib61) 2009; 41 Callahan, McMurde, Rosen, Han, Johnson, Holmes (bib9) 2016; 13 Oksanen, Guillaume Blanchet, Friendly, Kindt, Legendre, McGlinn, Minchin, O'Hara, Simpson, Solymos, Stevens, Szoecs, Wagner (bib46) 2018 Prosser, Nicol (bib51) 2012; 20 Voigt, Marushchak, Lamprecht, Jackowicz-Korczynski, Lindgren, Mastepanov, Granlund, Christensen, Tahvanainen, Martikainen, Biasi (bib68) 2017; 114 Leininger, Urich, Schloter, Schwark, Qi, Nicol, Prosser, Schuster, Schleper (bib34) 2006; 442 Marushchak, Pitkämäki, Koponen, Biasi, Seppälä, Martikainen (bib39) 2011; 17 Maljanen, Sigurdsson, Guðmundsson, Óskarsson, Huttunen, Martikainen (bib37) 2010; 7 Alves, Minh, Urich, von Haeseler, Schleper (bib4) 2018; 9 Ludwig, Teepe, de Gerenyu, Flessa (bib35) 2006; 38 Graef, Hestnes, Svenning, Frenzel (bib18) 2011; 3 Gil (bib16) 2017 Voigt, Lamprecht, Marushchak, Lind, Novakovskiy, Aurela, Martikainen, Biasi (bib67) 2017; 23 Nemergut, Townsend, Sattin, Freeman, Fierer, Neff, Bowman, Schadt, Weintraub, Schmidt (bib43) 2008; 10 Wickham (bib71) 2018 Takakai, Desyatkin, Lopez, Fedorov, Desyatkin, Hatano (bib64) 2008; 113 Lehtovirta-Morley, Verhamme, Nicol, Prosser (bib33) 2013; 62 Jung, Kim, Sinninghe Damste, Rijpstra, Madsen, Kim, Hong, Si, Kerou, Schleper, Rhee (bib27) 2016; 8 Pinheiro, Bates, DebRoy, Sarkar, R Core Team (bib50) 2018 Nykänen, Alm, Lang, Silvola, Martikainen (bib45) 1995; 22 Caporaso, Kuczynski, Stombaugh, Bittinger, Bushman, Costello, Fierer, Gonzalez Peña, Goodrich, Gordon, Huttley, Kelley, Knights, Koenig, Ley, Lozupone, McDonald, Muegge, Pirrung, Reeder, Sevinsky, Turnbaugh, Walters, Widmann, Yatsunenko, Zeneveld, Knight (bib10) 2010; 7 Gil, Pérez, Boering, Martikainen, Biasi (bib17) 2017; 31 Banerjee, Siciliano (bib5) 2012; 78 Zhu, Burger, Doane, Horwath (bib73) 2013; 110 Pärn (10.1016/j.soilbio.2019.107539_bib49) 2018; 9 Caporaso (10.1016/j.soilbio.2019.107539_bib10) 2010; 7 Christensen (10.1016/j.soilbio.2019.107539_bib11) 1999; 31 Isobe (10.1016/j.soilbio.2019.107539_bib25) 2018; 122 Hu (10.1016/j.soilbio.2019.107539_bib22) 2015; 39 Pinheiro (10.1016/j.soilbio.2019.107539_bib50) Leininger (10.1016/j.soilbio.2019.107539_bib34) 2006; 442 Voigt (10.1016/j.soilbio.2019.107539_bib68) 2017; 114 Kits (10.1016/j.soilbio.2019.107539_bib30) 2017; 549 Rodionow (10.1016/j.soilbio.2019.107539_bib56) 2006; 135 Martikainen (10.1016/j.soilbio.2019.107539_bib38) 1993; 366 Kanakidou (10.1016/j.soilbio.2019.107539_bib28) 2016; 73 Kaverin (10.1016/j.soilbio.2019.107539_bib29) 2016; 49 Jung (10.1016/j.soilbio.2019.107539_bib27) 2016; 8 Prosser (10.1016/j.soilbio.2019.107539_bib51) 2012; 20 Callahan (10.1016/j.soilbio.2019.107539_bib9) 2016; 13 Pagés (10.1016/j.soilbio.2019.107539_bib47) 2017 Wickham (10.1016/j.soilbio.2019.107539_bib71) Ludwig (10.1016/j.soilbio.2019.107539_bib35) 2006; 38 Maljanen (10.1016/j.soilbio.2019.107539_bib37) 2010; 7 Zhu-Barker (10.1016/j.soilbio.2019.107539_bib74) 2015; 126 Wild (10.1016/j.soilbio.2019.107539_bib72) 2015; 29 Marushchak (10.1016/j.soilbio.2019.107539_bib39) 2011; 17 Edgar (10.1016/j.soilbio.2019.107539_bib15) 2011; 27 Biasi (10.1016/j.soilbio.2019.107539_bib6) 2014; 17 Mettel (10.1016/j.soilbio.2019.107539_bib40) 2010; 76 Myhre (10.1016/j.soilbio.2019.107539_bib42) 2013 Ravishankara (10.1016/j.soilbio.2019.107539_bib53) 2009; 326 Reay (10.1016/j.soilbio.2019.107539_bib54) 2008; 1 Nykänen (10.1016/j.soilbio.2019.107539_bib45) 1995; 22 Lamb (10.1016/j.soilbio.2019.107539_bib32) 2011; 17 van Kessel (10.1016/j.soilbio.2019.107539_bib65) 2015; 528 R Core Team (10.1016/j.soilbio.2019.107539_bib52) 2018 Herrmann (10.1016/j.soilbio.2019.107539_bib20) 2012; 14 Sauder (10.1016/j.soilbio.2019.107539_bib57) 2017; 11 Nemergut (10.1016/j.soilbio.2019.107539_bib43) 2008; 10 Shen (10.1016/j.soilbio.2019.107539_bib60) 2013; 344 Takakai (10.1016/j.soilbio.2019.107539_bib64) 2008; 113 Wickham (10.1016/j.soilbio.2019.107539_bib69) 2007; 21 Voigt (10.1016/j.soilbio.2019.107539_bib67) 2017; 23 Kozlowski (10.1016/j.soilbio.2019.107539_bib31) 2016; 10 Palmer (10.1016/j.soilbio.2019.107539_bib48) 2012; 6 Alves (10.1016/j.soilbio.2019.107539_bib4) 2018; 9 Siciliano (10.1016/j.soilbio.2019.107539_bib61) 2009; 41 Gubry-Rangin (10.1016/j.soilbio.2019.107539_bib19) 2011; 108 Repo (10.1016/j.soilbio.2019.107539_bib55) 2009; 2 Inselsbacher (10.1016/j.soilbio.2019.107539_bib23) 2007; 175 Butterbach-Bahl (10.1016/j.soilbio.2019.107539_bib8) 2013; 368 Schaeffer (10.1016/j.soilbio.2019.107539_bib58) 2013; 19 Alves (10.1016/j.soilbio.2019.107539_bib2) 2019; 10 Daebeler (10.1016/j.soilbio.2019.107539_bib13) 2017; 107 Stopnisek (10.1016/j.soilbio.2019.107539_bib63) 2010; 76 Neuwirth (10.1016/j.soilbio.2019.107539_bib44) Gil (10.1016/j.soilbio.2019.107539_bib16) 2017 Banerjee (10.1016/j.soilbio.2019.107539_bib5) 2012; 78 Booth (10.1016/j.soilbio.2019.107539_bib7) 2005; 75 Hink (10.1016/j.soilbio.2019.107539_bib21) 2018; 12 Altschul (10.1016/j.soilbio.2019.107539_bib1) 1990; 215 Graef (10.1016/j.soilbio.2019.107539_bib18) 2011; 3 IPCC (10.1016/j.soilbio.2019.107539_bib24) 2018 Ma (10.1016/j.soilbio.2019.107539_bib36) 2007; 39 Gil (10.1016/j.soilbio.2019.107539_bib17) 2017; 31 Lehtovirta-Morley (10.1016/j.soilbio.2019.107539_bib33) 2013; 62 Seppälä (10.1016/j.soilbio.2019.107539_bib59) 2003; 52 Daebeler (10.1016/j.soilbio.2019.107539_bib12) 2012; 3 Edgar (10.1016/j.soilbio.2019.107539_bib14) 2010; 26 van Lent (10.1016/j.soilbio.2019.107539_bib66) 2015; 12 Zhu (10.1016/j.soilbio.2019.107539_bib73) 2013; 110 Oksanen (10.1016/j.soilbio.2019.107539_bib46) Alves (10.1016/j.soilbio.2019.107539_bib3) 2013; 7 Stieglmeier (10.1016/j.soilbio.2019.107539_bib62) 2013; 8 Wickham (10.1016/j.soilbio.2019.107539_bib70) 2009 Jia (10.1016/j.soilbio.2019.107539_bib26) 2009; 11 |
References_xml | – volume: 108 start-page: 21206 year: 2011 end-page: 21211 ident: bib19 article-title: Niche specialization of terrestrial archaeal ammonia oxidizers publication-title: Proceedings of National Academy of Sciences of USA – volume: 10 start-page: 1836 year: 2016 end-page: 1845 ident: bib31 article-title: Pathways and key intermediates required for obligate aerobic ammonia-dependent chemolithotrophy in bacteria and Thaumarchaeota publication-title: The ISME Journal – volume: 75 start-page: 139 year: 2005 end-page: 157 ident: bib7 article-title: Controls on nitrogen cycling in terrestrial ecosystems: a synthetic analysis of literature data publication-title: Ecological Monographs – volume: 326 start-page: 123 year: 2009 end-page: 125 ident: bib53 article-title: Nitrous oxide(N publication-title: Science – volume: 110 start-page: 6328 year: 2013 end-page: 6333 ident: bib73 article-title: Ammonia oxidation pathways and nitrifier denitrification are significant sources of N publication-title: Proceedings of National Academy of Sciences of USA – volume: 114 start-page: 6238 year: 2017 end-page: 6243 ident: bib68 article-title: Increased nitrous oxide emissions from Arctic peatlands after permafrost thaw publication-title: Proceedings of National Academy of Sciences of USA – volume: 14 start-page: 3013 year: 2012 end-page: 3025 ident: bib20 article-title: Predominance of thaumarchaeal ammonia oxidizer abundance and transcriptional activity in an acidic fen publication-title: Environmental Microbiology – volume: 76 start-page: 5996 year: 2010 end-page: 6000 ident: bib40 article-title: Extraction of mRNA from soil publication-title: Applied and Environmental Microbiology – volume: 19 start-page: 3529 year: 2013 end-page: 3539 ident: bib58 article-title: Soil-plant N processes in a High Arctic ecosystem, NW Greenland are altered by long-term experimental warming and higher rainfall publication-title: Global Change Biology – volume: 135 start-page: 49 year: 2006 end-page: 62 ident: bib56 article-title: Organic matter composition and potential trace gas production of permafrost soils in the forest tundra in northern Siberia publication-title: Geoderma – year: 2017 ident: bib47 article-title: Biostrings: efficient manipulation of biological strings publication-title: R package version 2.46.0 – volume: 78 start-page: 346 year: 2012 end-page: 353 ident: bib5 article-title: Factors driving potential ammonia oxidation in Canadian Arctic ecosystems: does spatial scale matter? publication-title: Applied and Environmental Microbiology – volume: 3 start-page: 352 year: 2012 ident: bib12 article-title: Archaeal dominated ammonia-oxidizing communities in Icelandic grassland soils are moderately affected by long-term N fertilization and geothermal heating publication-title: Frontiers in Microbiology – volume: 7 start-page: 335 year: 2010 end-page: 336 ident: bib10 article-title: QIIME allows analysis of high-throughput community sequencing data publication-title: Nature Methods – volume: 73 start-page: 2039 year: 2016 end-page: 2047 ident: bib28 article-title: Past, present, and future atmospheric nitrogen deposition publication-title: Journal of the Atmospheric Sciences – volume: 7 start-page: 2711 year: 2010 end-page: 2738 ident: bib37 article-title: Greenhouse gas balances of managed peatlands in the Nordic countries - present knowledge and gaps publication-title: Biogeosciences – volume: 10 start-page: 3093 year: 2008 end-page: 3105 ident: bib43 article-title: The effects of chronic nitrogen fertilization on alpine tundra soil microbial communities: implications for carbon and nitrogen cycling publication-title: Environmental Microbiology – year: 2018 ident: bib71 article-title: Stringr: simple, consistent wrappers for common string operations. R package version 1.3.0 – volume: 13 start-page: 581 year: 2016 end-page: 583 ident: bib9 article-title: DADA2: high-resolution sample inference from Illumina amplicon data publication-title: Nature Methods – volume: 126 start-page: 251 year: 2015 end-page: 267 ident: bib74 article-title: The importance of abiotic reactions nitrous oxide production publication-title: Biochemistry – volume: 10 start-page: 1571 year: 2019 ident: bib2 article-title: Ammonia Oxidation by the Arctic Terrestrial Thaumarchaeote Candidatus Nitrosocosmicus arcticus Is Stimulated by Increasing Temperatures.Front publication-title: Microbiol – start-page: 32 year: 2018 ident: bib24 article-title: Summary for Policymakers. In: global warming of 1.5°C. An IPCC Special Report on the impacts of global warming of 1.5°C above pre-industrial levels and related global greenhouse gas emission pathways publication-title: The Context of Strengthening the Global Response to the Threat of Climate Change, Sustainable Development, and Efforts to Eradicate Poverty [V. Masson-Delmotte – volume: 38 start-page: 3516 year: 2006 end-page: 3519 ident: bib35 article-title: CO publication-title: Soil Biology and Biochemistry – volume: 41 start-page: 1104 year: 2009 end-page: 1110 ident: bib61 article-title: Nitrifier dominance of Arctic soil nitrous oxide emissions arises due to fungal competition with denitrifiers for nitrate publication-title: Soil Biology and Biochemistry – year: 2018 ident: bib52 article-title: R: A Language and Environment for Statistical Computing – volume: 22 start-page: 351 year: 1995 end-page: 357 ident: bib45 article-title: Emissions of CH publication-title: Journal of Biogeography – volume: 31 start-page: 172 year: 2017 end-page: 189 ident: bib17 article-title: Mechanisms responsible for high N publication-title: Global Biogeochemical Cycles – volume: 122 start-page: 220 year: 2018 end-page: 227 ident: bib25 article-title: Highly abundant acidophilic ammonia-oxidizing archaea causes high rates of nitrification and nitrate leaching in in nitrogen-saturated forest soils publication-title: Soil Biology and Biochemistry – volume: 23 start-page: 3121 year: 2017 end-page: 3138 ident: bib67 article-title: Warming of subarctic tundra increases emissions of all three important greenhouse gases - carbon dioxide, methane and nitrous oxide publication-title: Global Change Biology – volume: 21 start-page: 1 year: 2007 end-page: 20 ident: bib69 article-title: Reshaping data with the reshape package publication-title: Journal of Statistical Software – volume: 76 start-page: 7626 year: 2010 end-page: 7634 ident: bib63 article-title: ammonia ocidation in an acidic forest peat soil is not influenced by ammonia amendment publication-title: Applied and Environmental Microbiology – year: 2017 ident: bib16 article-title: Microbial Processes Responsible for the High N2O Emissions from Sub-arctic Permafrost Peatlands and Tropical Soils as Determined by Stable Isotopes Approaches. Dissertations in Forestry and Natural Sciences – volume: 9 start-page: 1517 year: 2018 ident: bib4 article-title: Unifying the global phylogeny and environmental distribution of ammonia-oxidizing archaea based on publication-title: Nature Communications – volume: 344 start-page: 121 year: 2013 end-page: 129 ident: bib60 article-title: Responses of the terrestrial ammonia-oxidising archaeon Ca. publication-title: FEMS Microbiology Letters – volume: 528 start-page: 555 year: 2015 end-page: 559 ident: bib65 article-title: Complete nitrification by a single microorganism publication-title: Nature – volume: 49 start-page: 498 year: 2016 end-page: 511 ident: bib29 article-title: Morphology and properties of the soils of permafrost peatlands in the southeast of the Bol’shezemel’skaya tundra publication-title: Eurasian Soil Science – year: 2018 ident: bib46 article-title: vegan: community Ecology Package. R package version 2.4-6 – volume: 17 start-page: 3187 year: 2011 end-page: 3194 ident: bib32 article-title: A high Arctic soil ecosystem resists long-term environmental manipulations publication-title: Global Change Biology – volume: 9 start-page: 1135 year: 2018 ident: bib49 article-title: Nitrogen-rich organic soils under warm well- drained conditions are global nitrous oxide emission hotspots publication-title: Nature Communications – year: 2013 ident: bib42 article-title: Anthropogenic and natural radiative forcing publication-title: Climate Change 2013 the Physical Science Basis – volume: 1 start-page: 430 year: 2008 end-page: 437 ident: bib54 article-title: Global nitrogen deposition and carbon sinks publication-title: Nature Geoscience – volume: 52 start-page: 141 year: 2003 end-page: 148 ident: bib59 article-title: Surface abrasion of palsas by wind action in Finnish Lapland publication-title: Geomorphology – volume: 107 start-page: 114 year: 2017 end-page: 124 ident: bib13 article-title: Soil warming and fertilization altered rates of nitrogen transformation processes and selected for adapted ammonia-oxidizing archaea in sub-arctic grassland soil publication-title: Soil Biology and Biochemistry – volume: 11 start-page: 1142 year: 2017 end-page: 1157 ident: bib57 article-title: Cultivation and characterization of Candidatus publication-title: The ISME Journal – volume: 215 start-page: 403 year: 1990 end-page: 410 ident: bib1 article-title: Basic local alignment search tool publication-title: Journal of Molecular Biology – volume: 7 start-page: 1620 year: 2013 end-page: 1631 ident: bib3 article-title: Nitrification rates in Arctic soils are associated with functionally distinct populations of ammonia oxidizing archaea publication-title: The ISME Journal – year: 2014 ident: bib44 article-title: RColorBrewer: ColorBrewer Palettes. R package version 1.1-2 – year: 2018 ident: bib50 article-title: Nlme: linear and nonlinear mixed effects models. R package version 3.1-131.1 – volume: 175 start-page: 311 year: 2007 end-page: 320 ident: bib23 article-title: Microbial activities and foliar uptake of nitrogen in the epiphytic bromeliad publication-title: New Phytologist – volume: 27 start-page: 2194 year: 2011 end-page: 2200 ident: bib15 article-title: UCHIME improves sensitivity and speed of chimera detection publication-title: BMC Bioinformatics – volume: 6 start-page: 1058 year: 2012 end-page: 1077 ident: bib48 article-title: Contrasting denitrifier communities relate to contrasting N publication-title: The ISME Journal – volume: 442 start-page: 806 year: 2006 end-page: 809 ident: bib34 article-title: Archaea predominate among ammonia-oxidizing prokaryotes in soils publication-title: Nature – volume: 17 start-page: 2601 year: 2011 end-page: 2614 ident: bib39 article-title: Hot spots for nitrous oxide emissions found in different types of permafrost peatlands publication-title: Global Change Biology – volume: 3 start-page: 466 year: 2011 end-page: 472 ident: bib18 article-title: The active methanotrophic community in a wetland from the high Arctic publication-title: Environmental Microbiology Reports – volume: 29 start-page: 567 year: 2015 end-page: 582 ident: bib72 article-title: Microbial nitrogen dynamics in organic and mineral soil horizons along a latitudinal transect in western Siberia publication-title: Global Biogeochemical Cycles – volume: 31 start-page: 637 year: 1999 end-page: 641 ident: bib11 article-title: Exchange of CH publication-title: Soil Biology and Biochemistry – volume: 8 start-page: 1135 year: 2013 end-page: 1146 ident: bib62 article-title: Aerobic nitrous oxide production through N-nitrosating hybrid formation in ammonia-oxidizing archaea publication-title: The ISME Journal – volume: 39 start-page: 2001 year: 2007 end-page: 2013 ident: bib36 article-title: Assessing the potential of ammonia oxidizing bacteria to produce nitrous oxide in soils of a high arctic lowland ecosystem on Devon Island, Canada publication-title: Soil Biology and Biochemistry – volume: 17 start-page: 112 year: 2014 end-page: 126 ident: bib6 article-title: Microbial respiration in arctic upland and peat soils as a source of atmospheric carbon dioxide publication-title: Ecosystems – year: 2009 ident: bib70 article-title: ggplot2: Elegant Graphics for Data Analysis – volume: 26 start-page: 2460 year: 2010 end-page: 2461 ident: bib14 article-title: Search and clustering orders of magnitude faster than BLAST publication-title: BMC Bioinformatics – volume: 12 start-page: 1084 year: 2018 end-page: 1093 ident: bib21 article-title: The consequences of niche and physiological differentiation of archaeal and bacterial ammonia oxidisers for nitrous oxide emissions publication-title: The ISME Journal – volume: 11 start-page: 1658 year: 2009 end-page: 1671 ident: bib26 article-title: Bacteria rather than Archaea dominate microbial ammonia oxidation in an agricultural soil publication-title: Environmental Microbiology – volume: 2 start-page: 189 year: 2009 end-page: 192 ident: bib55 article-title: Large N publication-title: Nature Geoscience – volume: 8 start-page: 983 year: 2016 end-page: 992 ident: bib27 article-title: Hydrophobic ammonia-oxidizing archaeon of the publication-title: Environmental Microbiology Reports – volume: 113 start-page: G02002 year: 2008 ident: bib64 article-title: CH publication-title: Journal of Geophysical Research: Biogeosciences – volume: 20 start-page: 523 year: 2012 end-page: 531 ident: bib51 article-title: Archaeal and bacterial ammonia-oxidisers in soil: the quest for niche specialisation and differentiation publication-title: Trends in Microbiology – volume: 12 start-page: 7299 year: 2015 end-page: 7313 ident: bib66 article-title: Reviews and syntheses: soil N publication-title: Biogeosciences – volume: 62 start-page: 129 year: 2013 end-page: 133 ident: bib33 article-title: Effect of nitrification inhibitors on the growth and activity of publication-title: Soil Biology and Biochemistry – volume: 549 start-page: 269 year: 2017 end-page: 272 ident: bib30 article-title: Kinetic analysis of a complete nitrifier reveals an oligotrophic lifestyle publication-title: Nature – volume: 39 start-page: 729 year: 2015 end-page: 749 ident: bib22 article-title: Microbial regulation of terrestrial nitrous oxide formation: understanding the biological pathways for prediction of emission rates publication-title: FEMS Microbiology Reviews 2015 – volume: 366 start-page: 51 year: 1993 end-page: 53 ident: bib38 article-title: Effect of a lowered water-table on nitrous-oxide fluxes from northern peatlands publication-title: Nature – volume: 368 start-page: 20130122 year: 2013 ident: bib8 article-title: Nitrous oxide emissions from soils: how well do we understand the processes and their controls? publication-title: Philosophical Transactions of the Royal Society of London Series B Biological Sciences – volume: 442 start-page: 806 year: 2006 ident: 10.1016/j.soilbio.2019.107539_bib34 article-title: Archaea predominate among ammonia-oxidizing prokaryotes in soils publication-title: Nature doi: 10.1038/nature04983 – ident: 10.1016/j.soilbio.2019.107539_bib44 – volume: 108 start-page: 21206 year: 2011 ident: 10.1016/j.soilbio.2019.107539_bib19 article-title: Niche specialization of terrestrial archaeal ammonia oxidizers publication-title: Proceedings of National Academy of Sciences of USA doi: 10.1073/pnas.1109000108 – volume: 62 start-page: 129 year: 2013 ident: 10.1016/j.soilbio.2019.107539_bib33 article-title: Effect of nitrification inhibitors on the growth and activity of Nitrosotalea devanaterra in culture and soil publication-title: Soil Biology and Biochemistry doi: 10.1016/j.soilbio.2013.01.020 – volume: 39 start-page: 2001 year: 2007 ident: 10.1016/j.soilbio.2019.107539_bib36 article-title: Assessing the potential of ammonia oxidizing bacteria to produce nitrous oxide in soils of a high arctic lowland ecosystem on Devon Island, Canada publication-title: Soil Biology and Biochemistry doi: 10.1016/j.soilbio.2007.03.001 – volume: 29 start-page: 567 year: 2015 ident: 10.1016/j.soilbio.2019.107539_bib72 article-title: Microbial nitrogen dynamics in organic and mineral soil horizons along a latitudinal transect in western Siberia publication-title: Global Biogeochemical Cycles doi: 10.1002/2015GB005084 – volume: 366 start-page: 51 year: 1993 ident: 10.1016/j.soilbio.2019.107539_bib38 article-title: Effect of a lowered water-table on nitrous-oxide fluxes from northern peatlands publication-title: Nature doi: 10.1038/366051a0 – volume: 2 start-page: 189 year: 2009 ident: 10.1016/j.soilbio.2019.107539_bib55 article-title: Large N2O emissions from cryoturbated peat soil in tundra publication-title: Nature Geoscience doi: 10.1038/ngeo434 – volume: 19 start-page: 3529 year: 2013 ident: 10.1016/j.soilbio.2019.107539_bib58 article-title: Soil-plant N processes in a High Arctic ecosystem, NW Greenland are altered by long-term experimental warming and higher rainfall publication-title: Global Change Biology doi: 10.1111/gcb.12318 – volume: 76 start-page: 7626 year: 2010 ident: 10.1016/j.soilbio.2019.107539_bib63 article-title: Thaumarchaeal ammonia ocidation in an acidic forest peat soil is not influenced by ammonia amendment publication-title: Applied and Environmental Microbiology doi: 10.1128/AEM.00595-10 – volume: 215 start-page: 403 year: 1990 ident: 10.1016/j.soilbio.2019.107539_bib1 article-title: Basic local alignment search tool publication-title: Journal of Molecular Biology doi: 10.1016/S0022-2836(05)80360-2 – volume: 8 start-page: 983 year: 2016 ident: 10.1016/j.soilbio.2019.107539_bib27 article-title: Hydrophobic ammonia-oxidizing archaeon of the Nitrosocosmicus clade isolated from coal tar-contaminated sediment publication-title: Environmental Microbiology Reports doi: 10.1111/1758-2229.12477 – volume: 1 start-page: 430 year: 2008 ident: 10.1016/j.soilbio.2019.107539_bib54 article-title: Global nitrogen deposition and carbon sinks publication-title: Nature Geoscience doi: 10.1038/ngeo230 – volume: 75 start-page: 139 year: 2005 ident: 10.1016/j.soilbio.2019.107539_bib7 article-title: Controls on nitrogen cycling in terrestrial ecosystems: a synthetic analysis of literature data publication-title: Ecological Monographs doi: 10.1890/04-0988 – volume: 7 start-page: 335 year: 2010 ident: 10.1016/j.soilbio.2019.107539_bib10 article-title: QIIME allows analysis of high-throughput community sequencing data publication-title: Nature Methods doi: 10.1038/nmeth.f.303 – volume: 11 start-page: 1142 year: 2017 ident: 10.1016/j.soilbio.2019.107539_bib57 article-title: Cultivation and characterization of Candidatus Nitrosocosmicus exaquare, an ammonia-oxidizing archaeon from a municipal wastewater treatment system publication-title: The ISME Journal doi: 10.1038/ismej.2016.192 – volume: 76 start-page: 5996 year: 2010 ident: 10.1016/j.soilbio.2019.107539_bib40 article-title: Extraction of mRNA from soil publication-title: Applied and Environmental Microbiology doi: 10.1128/AEM.03047-09 – volume: 12 start-page: 1084 year: 2018 ident: 10.1016/j.soilbio.2019.107539_bib21 article-title: The consequences of niche and physiological differentiation of archaeal and bacterial ammonia oxidisers for nitrous oxide emissions publication-title: The ISME Journal doi: 10.1038/s41396-017-0025-5 – volume: 11 start-page: 1658 year: 2009 ident: 10.1016/j.soilbio.2019.107539_bib26 article-title: Bacteria rather than Archaea dominate microbial ammonia oxidation in an agricultural soil publication-title: Environmental Microbiology doi: 10.1111/j.1462-2920.2009.01891.x – volume: 52 start-page: 141 year: 2003 ident: 10.1016/j.soilbio.2019.107539_bib59 article-title: Surface abrasion of palsas by wind action in Finnish Lapland publication-title: Geomorphology doi: 10.1016/S0169-555X(02)00254-4 – volume: 9 start-page: 1517 year: 2018 ident: 10.1016/j.soilbio.2019.107539_bib4 article-title: Unifying the global phylogeny and environmental distribution of ammonia-oxidizing archaea based on amoA genes publication-title: Nature Communications doi: 10.1038/s41467-018-03861-1 – year: 2017 ident: 10.1016/j.soilbio.2019.107539_bib47 article-title: Biostrings: efficient manipulation of biological strings publication-title: R package version 2.46.0 – volume: 126 start-page: 251 year: 2015 ident: 10.1016/j.soilbio.2019.107539_bib74 article-title: The importance of abiotic reactions nitrous oxide production publication-title: Biochemistry – volume: 49 start-page: 498 year: 2016 ident: 10.1016/j.soilbio.2019.107539_bib29 article-title: Morphology and properties of the soils of permafrost peatlands in the southeast of the Bol’shezemel’skaya tundra publication-title: Eurasian Soil Science doi: 10.1134/S1064229316050069 – volume: 344 start-page: 121 year: 2013 ident: 10.1016/j.soilbio.2019.107539_bib60 article-title: Responses of the terrestrial ammonia-oxidising archaeon Ca. Nitrososphaera viennensis and the ammonia-oxidising bacterium Nitrosospira multiformis to nitrification inhibitors publication-title: FEMS Microbiology Letters doi: 10.1111/1574-6968.12164 – volume: 26 start-page: 2460 year: 2010 ident: 10.1016/j.soilbio.2019.107539_bib14 article-title: Search and clustering orders of magnitude faster than BLAST publication-title: BMC Bioinformatics doi: 10.1093/bioinformatics/btq461 – volume: 9 start-page: 1135 year: 2018 ident: 10.1016/j.soilbio.2019.107539_bib49 article-title: Nitrogen-rich organic soils under warm well- drained conditions are global nitrous oxide emission hotspots publication-title: Nature Communications doi: 10.1038/s41467-018-03540-1 – volume: 17 start-page: 112 year: 2014 ident: 10.1016/j.soilbio.2019.107539_bib6 article-title: Microbial respiration in arctic upland and peat soils as a source of atmospheric carbon dioxide publication-title: Ecosystems doi: 10.1007/s10021-013-9710-z – volume: 7 start-page: 2711 year: 2010 ident: 10.1016/j.soilbio.2019.107539_bib37 article-title: Greenhouse gas balances of managed peatlands in the Nordic countries - present knowledge and gaps publication-title: Biogeosciences doi: 10.5194/bg-7-2711-2010 – volume: 14 start-page: 3013 year: 2012 ident: 10.1016/j.soilbio.2019.107539_bib20 article-title: Predominance of thaumarchaeal ammonia oxidizer abundance and transcriptional activity in an acidic fen publication-title: Environmental Microbiology doi: 10.1111/j.1462-2920.2012.02882.x – year: 2013 ident: 10.1016/j.soilbio.2019.107539_bib42 article-title: Anthropogenic and natural radiative forcing – volume: 10 start-page: 3093 year: 2008 ident: 10.1016/j.soilbio.2019.107539_bib43 article-title: The effects of chronic nitrogen fertilization on alpine tundra soil microbial communities: implications for carbon and nitrogen cycling publication-title: Environmental Microbiology doi: 10.1111/j.1462-2920.2008.01735.x – volume: 21 start-page: 1 year: 2007 ident: 10.1016/j.soilbio.2019.107539_bib69 article-title: Reshaping data with the reshape package publication-title: Journal of Statistical Software doi: 10.18637/jss.v021.i12 – volume: 368 start-page: 20130122 year: 2013 ident: 10.1016/j.soilbio.2019.107539_bib8 article-title: Nitrous oxide emissions from soils: how well do we understand the processes and their controls? publication-title: Philosophical Transactions of the Royal Society of London Series B Biological Sciences doi: 10.1098/rstb.2013.0122 – volume: 528 start-page: 555 year: 2015 ident: 10.1016/j.soilbio.2019.107539_bib65 article-title: Complete nitrification by a single microorganism publication-title: Nature doi: 10.1038/nature16459 – volume: 12 start-page: 7299 year: 2015 ident: 10.1016/j.soilbio.2019.107539_bib66 article-title: Reviews and syntheses: soil N2O and NO emissions from land use and land-use change in the tropics and subtropics: a meta-analysis publication-title: Biogeosciences doi: 10.5194/bg-12-7299-2015 – volume: 7 start-page: 1620 year: 2013 ident: 10.1016/j.soilbio.2019.107539_bib3 article-title: Nitrification rates in Arctic soils are associated with functionally distinct populations of ammonia oxidizing archaea publication-title: The ISME Journal doi: 10.1038/ismej.2013.35 – volume: 10 start-page: 1571 year: 2019 ident: 10.1016/j.soilbio.2019.107539_bib2 article-title: Ammonia Oxidation by the Arctic Terrestrial Thaumarchaeote Candidatus Nitrosocosmicus arcticus Is Stimulated by Increasing Temperatures.Front publication-title: Microbiol – volume: 31 start-page: 172 year: 2017 ident: 10.1016/j.soilbio.2019.107539_bib17 article-title: Mechanisms responsible for high N2O emissions from subarctic permafrost peatlands studied via stable isotope techniques publication-title: Global Biogeochemical Cycles doi: 10.1002/2015GB005370 – volume: 326 start-page: 123 year: 2009 ident: 10.1016/j.soilbio.2019.107539_bib53 article-title: Nitrous oxide(N2O): the dominant ozone-depleting substance emitted in the 21st century publication-title: Science doi: 10.1126/science.1176985 – year: 2009 ident: 10.1016/j.soilbio.2019.107539_bib70 – volume: 6 start-page: 1058 year: 2012 ident: 10.1016/j.soilbio.2019.107539_bib48 article-title: Contrasting denitrifier communities relate to contrasting N2O emission patterns from acidic peat soils in arctic tundra publication-title: The ISME Journal doi: 10.1038/ismej.2011.172 – ident: 10.1016/j.soilbio.2019.107539_bib71 – start-page: 32 year: 2018 ident: 10.1016/j.soilbio.2019.107539_bib24 article-title: Summary for Policymakers. In: global warming of 1.5°C. An IPCC Special Report on the impacts of global warming of 1.5°C above pre-industrial levels and related global greenhouse gas emission pathways – volume: 3 start-page: 466 year: 2011 ident: 10.1016/j.soilbio.2019.107539_bib18 article-title: The active methanotrophic community in a wetland from the high Arctic publication-title: Environmental Microbiology Reports doi: 10.1111/j.1758-2229.2010.00237.x – volume: 8 start-page: 1135 year: 2013 ident: 10.1016/j.soilbio.2019.107539_bib62 article-title: Aerobic nitrous oxide production through N-nitrosating hybrid formation in ammonia-oxidizing archaea publication-title: The ISME Journal doi: 10.1038/ismej.2013.220 – volume: 113 start-page: G02002 year: 2008 ident: 10.1016/j.soilbio.2019.107539_bib64 article-title: CH4 and N2O emissions from a forest-alas ecosystem in the permafrost taiga forest region, eastern Siberia, Russia publication-title: Journal of Geophysical Research: Biogeosciences doi: 10.1029/2007JG000521 – volume: 38 start-page: 3516 year: 2006 ident: 10.1016/j.soilbio.2019.107539_bib35 article-title: CO2 and N2O emissions from gleyic soils in the Russian tundra and a German forest during freeze-thaw periods – a microcosm study publication-title: Soil Biology and Biochemistry doi: 10.1016/j.soilbio.2006.06.006 – volume: 78 start-page: 346 year: 2012 ident: 10.1016/j.soilbio.2019.107539_bib5 article-title: Factors driving potential ammonia oxidation in Canadian Arctic ecosystems: does spatial scale matter? publication-title: Applied and Environmental Microbiology doi: 10.1128/AEM.06132-11 – volume: 122 start-page: 220 year: 2018 ident: 10.1016/j.soilbio.2019.107539_bib25 article-title: Highly abundant acidophilic ammonia-oxidizing archaea causes high rates of nitrification and nitrate leaching in in nitrogen-saturated forest soils publication-title: Soil Biology and Biochemistry doi: 10.1016/j.soilbio.2018.04.021 – volume: 135 start-page: 49 year: 2006 ident: 10.1016/j.soilbio.2019.107539_bib56 article-title: Organic matter composition and potential trace gas production of permafrost soils in the forest tundra in northern Siberia publication-title: Geoderma doi: 10.1016/j.geoderma.2005.10.008 – volume: 13 start-page: 581 year: 2016 ident: 10.1016/j.soilbio.2019.107539_bib9 article-title: DADA2: high-resolution sample inference from Illumina amplicon data publication-title: Nature Methods doi: 10.1038/nmeth.3869 – volume: 22 start-page: 351 year: 1995 ident: 10.1016/j.soilbio.2019.107539_bib45 article-title: Emissions of CH4, N2O and CO2 from a virgil fen and a fen drained for grassland in Finland publication-title: Journal of Biogeography doi: 10.2307/2845930 – volume: 17 start-page: 3187 year: 2011 ident: 10.1016/j.soilbio.2019.107539_bib32 article-title: A high Arctic soil ecosystem resists long-term environmental manipulations publication-title: Global Change Biology doi: 10.1111/j.1365-2486.2011.02431.x – volume: 3 start-page: 352 year: 2012 ident: 10.1016/j.soilbio.2019.107539_bib12 article-title: Archaeal dominated ammonia-oxidizing communities in Icelandic grassland soils are moderately affected by long-term N fertilization and geothermal heating publication-title: Frontiers in Microbiology doi: 10.3389/fmicb.2012.00352 – volume: 41 start-page: 1104 year: 2009 ident: 10.1016/j.soilbio.2019.107539_bib61 article-title: Nitrifier dominance of Arctic soil nitrous oxide emissions arises due to fungal competition with denitrifiers for nitrate publication-title: Soil Biology and Biochemistry doi: 10.1016/j.soilbio.2009.02.024 – volume: 175 start-page: 311 year: 2007 ident: 10.1016/j.soilbio.2019.107539_bib23 article-title: Microbial activities and foliar uptake of nitrogen in the epiphytic bromeliad Vriesea gigantea publication-title: New Phytologist doi: 10.1111/j.1469-8137.2007.02098.x – volume: 23 start-page: 3121 year: 2017 ident: 10.1016/j.soilbio.2019.107539_bib67 article-title: Warming of subarctic tundra increases emissions of all three important greenhouse gases - carbon dioxide, methane and nitrous oxide publication-title: Global Change Biology doi: 10.1111/gcb.13563 – year: 2017 ident: 10.1016/j.soilbio.2019.107539_bib16 – volume: 110 start-page: 6328 year: 2013 ident: 10.1016/j.soilbio.2019.107539_bib73 article-title: Ammonia oxidation pathways and nitrifier denitrification are significant sources of N2O and NO under low oxygen availability publication-title: Proceedings of National Academy of Sciences of USA doi: 10.1073/pnas.1219993110 – volume: 107 start-page: 114 year: 2017 ident: 10.1016/j.soilbio.2019.107539_bib13 article-title: Soil warming and fertilization altered rates of nitrogen transformation processes and selected for adapted ammonia-oxidizing archaea in sub-arctic grassland soil publication-title: Soil Biology and Biochemistry doi: 10.1016/j.soilbio.2016.12.013 – volume: 10 start-page: 1836 year: 2016 ident: 10.1016/j.soilbio.2019.107539_bib31 article-title: Pathways and key intermediates required for obligate aerobic ammonia-dependent chemolithotrophy in bacteria and Thaumarchaeota publication-title: The ISME Journal doi: 10.1038/ismej.2016.2 – volume: 20 start-page: 523 year: 2012 ident: 10.1016/j.soilbio.2019.107539_bib51 article-title: Archaeal and bacterial ammonia-oxidisers in soil: the quest for niche specialisation and differentiation publication-title: Trends in Microbiology doi: 10.1016/j.tim.2012.08.001 – year: 2018 ident: 10.1016/j.soilbio.2019.107539_bib52 – volume: 39 start-page: 729 year: 2015 ident: 10.1016/j.soilbio.2019.107539_bib22 article-title: Microbial regulation of terrestrial nitrous oxide formation: understanding the biological pathways for prediction of emission rates publication-title: FEMS Microbiology Reviews 2015 doi: 10.1093/femsre/fuv021 – volume: 73 start-page: 2039 year: 2016 ident: 10.1016/j.soilbio.2019.107539_bib28 article-title: Past, present, and future atmospheric nitrogen deposition publication-title: Journal of the Atmospheric Sciences doi: 10.1175/JAS-D-15-0278.1 – volume: 17 start-page: 2601 year: 2011 ident: 10.1016/j.soilbio.2019.107539_bib39 article-title: Hot spots for nitrous oxide emissions found in different types of permafrost peatlands publication-title: Global Change Biology doi: 10.1111/j.1365-2486.2011.02442.x – volume: 114 start-page: 6238 year: 2017 ident: 10.1016/j.soilbio.2019.107539_bib68 article-title: Increased nitrous oxide emissions from Arctic peatlands after permafrost thaw publication-title: Proceedings of National Academy of Sciences of USA doi: 10.1073/pnas.1702902114 – ident: 10.1016/j.soilbio.2019.107539_bib46 – volume: 31 start-page: 637 year: 1999 ident: 10.1016/j.soilbio.2019.107539_bib11 article-title: Exchange of CH4 and N2O in a subarctic heath soil: effects of inorganic N and P and amino acid addition publication-title: Soil Biology and Biochemistry doi: 10.1016/S0038-0717(98)00166-7 – volume: 27 start-page: 2194 year: 2011 ident: 10.1016/j.soilbio.2019.107539_bib15 article-title: UCHIME improves sensitivity and speed of chimera detection publication-title: BMC Bioinformatics doi: 10.1093/bioinformatics/btr381 – volume: 549 start-page: 269 year: 2017 ident: 10.1016/j.soilbio.2019.107539_bib30 article-title: Kinetic analysis of a complete nitrifier reveals an oligotrophic lifestyle publication-title: Nature doi: 10.1038/nature23679 – ident: 10.1016/j.soilbio.2019.107539_bib50 |
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Snippet | Bare peat surfaces created by frost action and wind erosion in permafrost peatlands have been shown to emit high amounts of nitrous oxide (N2O). With global... Bare peat surfaces created by frost action and wind erosion in permafrost peatlands show high nitrous oxide (N2O) emissions. With global warming, emissions of... |
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SubjectTerms | ammonia Ammonia oxidation AOA Archaea Arctic region Climate change ecosystems frigid soils frost global warming greenhouse gas emissions greenhouse gases nitrates nitrification nitrites nitrogen nitrous oxide nitrous oxide production oxidants oxidation peat peat soils peatlands Permafrost phylotype wind erosion |
Title | Archaeal nitrification is a key driver of high nitrous oxide emissions from arctic peatlands |
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