Microglia drive transient insult-induced brain injury by chemotactic recruitment of CD8+ T lymphocytes

The crosstalk between the nervous and immune systems has gained increasing attention for its emerging role in neurological diseases. Radiation-induced brain injury (RIBI) remains the most common medical complication of cranial radiotherapy, and its pathological mechanisms have yet to be elucidated....

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Published inNeuron (Cambridge, Mass.) Vol. 111; no. 5; pp. 696 - 710.e9
Main Authors Shi, Zhongshan, Yu, Pei, Lin, Wei-Jye, Chen, Sitai, Hu, Xia, Chen, Siqi, Cheng, Jinping, Liu, Qiang, Yang, Yuhua, Li, Shaojian, Zhang, Zhan, Xie, Jiatian, Jiang, Jingru, He, Baixuan, Li, Yi, Li, Honghong, Xu, Yongteng, Zeng, Junbo, Huang, Jialin, Mei, Jinghong, Cai, Jinhua, Chen, Jiongxue, Wu, Long-Jun, Ko, Ho, Tang, Yamei
Format Journal Article
LanguageEnglish
Published United States Elsevier Inc 01.03.2023
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Abstract The crosstalk between the nervous and immune systems has gained increasing attention for its emerging role in neurological diseases. Radiation-induced brain injury (RIBI) remains the most common medical complication of cranial radiotherapy, and its pathological mechanisms have yet to be elucidated. Here, using single-cell RNA and T cell receptor sequencing, we found infiltration and clonal expansion of CD8+ T lymphocytes in the lesioned brain tissues of RIBI patients. Furthermore, by strategies of genetic or pharmacologic interruption, we identified a chemotactic action of microglia-derived CCL2/CCL8 chemokines in mediating the infiltration of CCR2+/CCR5+ CD8+ T cells and tissue damage in RIBI mice. Such a chemotactic axis also participated in the progression of cerebral infarction in the mouse model of ischemic injury. Our findings therefore highlight the critical role of microglia in mediating the dysregulation of adaptive immune responses and reveal a potential therapeutic strategy for non-infectious brain diseases. [Display omitted] •Combined scRNA and TCR sequencing of human brain tissues with injury•Infiltrated CD8+ T cells participate in radiation-induced and ischemic brain injuries•Disease-associated microglial cluster featured with CCL2 and CCL8 expression•Microglia-derived CCL2/CCL8 mediate brain infiltration of CD8+ T cells Using single-cell transcriptomic and immune repertoire sequencing, Shi et al. identify a chemotactic action mediated by microglia-derived CCL2/CCL8 chemokines in recruiting CD8+ T cells. These cause brain injuries in radiation-induced brain injury and ischemic stroke models, providing mechanistic insight and a potential therapeutic strategy for non-infectious brain diseases.
AbstractList The crosstalk between the nervous and immune systems has gained increasing attention for its emerging role in neurological diseases. Radiation-induced brain injury (RIBI) remains the most common medical complication of cranial radiotherapy, and its pathological mechanisms have yet to be elucidated. Here, using single-cell RNA and T cell receptor sequencing, we found infiltration and clonal expansion of CD8 T lymphocytes in the lesioned brain tissues of RIBI patients. Furthermore, by strategies of genetic or pharmacologic interruption, we identified a chemotactic action of microglia-derived CCL2/CCL8 chemokines in mediating the infiltration of CCR2 /CCR5 CD8 T cells and tissue damage in RIBI mice. Such a chemotactic axis also participated in the progression of cerebral infarction in the mouse model of ischemic injury. Our findings therefore highlight the critical role of microglia in mediating the dysregulation of adaptive immune responses and reveal a potential therapeutic strategy for non-infectious brain diseases.
The crosstalk between the nervous and immune systems has gained increasing attention for its emerging role in neurological diseases. Radiation-induced brain injury (RIBI) remains the most common medical complication of cranial radiotherapy, and its pathological mechanisms have yet to be elucidated. Here, using single-cell RNA and T cell receptor sequencing, we found infiltration and clonal expansion of CD8+ T lymphocytes in the lesioned brain tissues of RIBI patients. Furthermore, by strategies of genetic or pharmacologic interruption, we identified a chemotactic action of microglia-derived CCL2/CCL8 chemokines in mediating the infiltration of CCR2+/CCR5+ CD8+ T cells and tissue damage in RIBI mice. Such a chemotactic axis also participated in the progression of cerebral infarction in the mouse model of ischemic injury. Our findings therefore highlight the critical role of microglia in mediating the dysregulation of adaptive immune responses and reveal a potential therapeutic strategy for non-infectious brain diseases. [Display omitted] •Combined scRNA and TCR sequencing of human brain tissues with injury•Infiltrated CD8+ T cells participate in radiation-induced and ischemic brain injuries•Disease-associated microglial cluster featured with CCL2 and CCL8 expression•Microglia-derived CCL2/CCL8 mediate brain infiltration of CD8+ T cells Using single-cell transcriptomic and immune repertoire sequencing, Shi et al. identify a chemotactic action mediated by microglia-derived CCL2/CCL8 chemokines in recruiting CD8+ T cells. These cause brain injuries in radiation-induced brain injury and ischemic stroke models, providing mechanistic insight and a potential therapeutic strategy for non-infectious brain diseases.
Author Li, Honghong
Cheng, Jinping
Lin, Wei-Jye
Hu, Xia
Li, Yi
Tang, Yamei
Wu, Long-Jun
Jiang, Jingru
Xie, Jiatian
Xu, Yongteng
Chen, Jiongxue
Zeng, Junbo
Yang, Yuhua
Shi, Zhongshan
Chen, Sitai
Yu, Pei
Liu, Qiang
Zhang, Zhan
Mei, Jinghong
Huang, Jialin
Ko, Ho
Li, Shaojian
He, Baixuan
Chen, Siqi
Cai, Jinhua
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Cites_doi 10.1007/s11912-019-0818-y
10.1073/pnas.0506580102
10.1128/JVI.00980-19
10.1073/pnas.91.9.3652
10.1093/cid/ciw878
10.1038/s41598-017-17204-5
10.3389/fimmu.2012.00064
10.15252/embr.201846171
10.1016/j.cels.2018.11.005
10.1016/j.cell.2014.06.008
10.1093/bioinformatics/btw777
10.1038/nature25739
10.1038/s41586-019-0933-9
10.1186/s13059-015-0844-5
10.1186/s13059-019-1662-y
10.1038/s41586-021-03892-7
10.1093/neuonc/noz048
10.1084/jem.20071030
10.1006/cimm.1998.1379
10.1073/pnas.1525528113
10.1073/pnas.1604263113
10.1016/j.it.2022.01.003
10.1038/s43587-021-00049-z
10.1038/mp.2017.64
10.1016/j.neuron.2018.12.006
10.1093/jrr/rru017
10.1038/s41586-019-0924-x
10.1212/NXI.0000000000000107
10.1002/ana.21744
10.1371/journal.pone.0036529
10.1126/science.abf7844
10.1038/s41467-019-13812-z
10.1016/j.neuron.2017.09.026
10.1186/s13041-017-0296-9
10.3390/ijms21165647
10.1038/nbt.4091
10.1523/JNEUROSCI.1867-14.2014
10.1038/s41467-020-14766-3
10.1126/science.abf7266
10.1038/s41596-020-0292-x
10.2176/nmc.43.391
10.1002/ana.20315
10.1007/s12035-015-9628-x
10.1523/JNEUROSCI.0315-17.2017
10.1016/j.cell.2021.12.043
10.1016/j.cell.2017.05.018
10.1016/j.immuni.2015.01.005
10.1038/nature14407
10.1371/journal.pone.0093650
10.1016/j.gpb.2021.08.001
10.1016/j.it.2012.07.004
10.1038/nbt.4038
10.1172/JCI58648
10.1016/j.immuni.2018.01.011
10.1016/j.celrep.2021.110252
10.1038/s41593-018-0242-x
10.1007/s12035-014-9070-5
10.1038/s41592-019-0619-0
10.1038/nmeth.3971
10.1038/s41586-019-1362-5
10.3389/fimmu.2019.02690
10.1016/j.celrep.2020.01.010
10.1007/s00795-015-0123-2
10.1016/j.ijrobp.2015.11.037
10.1016/j.cell.2020.12.040
10.1038/nature16939
10.1093/neuonc/not221
10.1186/s40478-022-01453-1
10.1259/0007-1285-61-731-1043
10.1084/jem.20180247
10.1212/NXI.0000000000000466
10.1016/j.immuni.2018.11.004
10.12688/f1000research.22139.1
10.1016/S0140-6736(19)30956-0
10.4049/jimmunol.1502021
10.1126/science.aat7554
10.1038/nmeth.4463
10.1111/neup.12235
10.1038/s41467-020-16904-3
10.1038/nm.4397
10.1016/j.cels.2019.05.003
10.1186/s13059-016-0947-7
10.1073/pnas.0500334102
10.1038/s41593-021-00880-y
10.1093/brain/awm214
10.1093/nar/gky900
10.1146/annurev-immunol-102319-103410
10.1093/hmg/ddaa038
10.1172/JCI135530
10.1038/nbt.4096
10.1227/00006123-199411000-00004
10.1096/fj.202000365RR
10.1016/j.bbi.2015.06.020
10.1038/nn2015
10.1124/pr.113.007724
10.1097/WCO.0b013e328352ea8b
10.1038/s41586-020-1999-0
10.2176/nmc.ra.2014-0188
10.1038/nmeth.2089
10.1093/bioinformatics/btv325
10.1038/s41586-019-1895-7
10.1038/nn.4610
10.1179/016164101101199324
10.1016/j.nbd.2005.08.006
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Issue 5
Keywords radiation-induced brain injury
CD8+ T cell
microglia
ischemic stroke
chemoattraction
CD8(+) T cell
Language English
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References Cugurra, Mamuladze, Rustenhoven, Dykstra, Beroshvili, Greenberg, Baker, Papadopoulos, Drieu, Blackburn (bib74) 2021; 373
Liu, Li, Li, Wang, Ren, Zhang (bib37) 2020; 11
Tang, Le (bib69) 2016; 53
Lun, Riesenfeld, Andrews, Dao, Gomes, Marioni (bib79) 2019; 20
Subramanian, Tamayo, Mootha, Mukherjee, Ebert, Gillette, Paulovich, Pomeroy, Golub, Lander (bib86) 2005; 102
Lun, McCarthy, Marioni (bib80) 2016; 5
He, Wang, He, Li, Yang, Shi, Liu, Wu, Sun, Xie (bib31) 2020; 34
Groh, Knöpper, Arampatzi, Yuan, Lößlein, Saliba, Kastenmüller, Martini (bib51) 2021; 1
Vargas, Nascimbene, Krishnan, Zimmerman, Pardo (bib59) 2005; 57
Haruwaka, Ikegami, Tachibana, Ohno, Konishi, Hashimoto, Matsumoto, Kato, Ono, Kiyama (bib64) 2019; 10
Gonzalez, Mei, Robles, Hagerling, Allen, Hauge Okholm, Nanjaraj, Verbeek, Kalavacherla, van Gogh (bib20) 2022; 185
Xu, Xu, Hu, Wang, Pan, Murugan, Wu, Tang (bib12) 2015; 50
Satoh, Kino, Asahina, Takitani, Miyoshi, Ishida, Saito (bib46) 2016; 36
Zhang, Lan, Xu, Quan, Zhao, Deng, Luo, Xu, Liao, Yan (bib87) 2019; 47
Haghverdi, Lun, Morgan, Marioni (bib82) 2018; 36
Mildner, Schmidt, Nitsche, Merkler, Hanisch, Mack, Heikenwalder, Brück, Priller, Prinz (bib56) 2007; 10
Wu, Pan, Zuo, Li, Hong (bib101) 2017; 96
Willing, Friese (bib47) 2012; 25
Lake, Chen, Sos, Fan, Kaeser, Yung, Duong, Gao, Chun, Kharchenko (bib103) 2018; 36
Rustenhoven, Drieu, Mamuladze, de Lima, Dykstra, Wall, Papadopoulos, Kanamori, Salvador, Baker (bib62) 2021; 184
Held, Bhonsle-Deeng, Siewert, Sato, Beltrán, Schmidt, Rühl, Ng, Engerer, Moser (bib77) 2015; 2
Miyatake, Nonoguchi, Furuse, Yoritsune, Miyata, Kawabata, Kuroiwa (bib10) 2015; 55
McCarthy, Campbell, Lun, Wills (bib81) 2017; 33
Yamada, Elsaesser, Lux, Timmerman, Morrison, de la Torre, Nimmerjahn, Brooks (bib108) 2015; 42
Dulken, Buckley, Navarro Negredo, Saligrama, Cayrol, Leeman, George, Boutet, Hebestreit, Pluvinage (bib50) 2019; 571
Mracsko, Liesz, Stojanovic, Lou, Osswald, Zhou, Karcher, Winkler, Martin-Villalba, Cerwenka, Veltkamp (bib52) 2014; 34
Friese, Fugger (bib48) 2009; 66
Huseby, Huseby, Shah, Smith, Stadinski (bib49) 2012; 3
Wolock, Lopez, Klein (bib88) 2019; 8
Chen, Chen, Zhang, Zhu, Tang, Wang, Dong, Zhang, Yu, Sun (bib97) 2021; 19
Schläger, Körner, Krueger, Vidoli, Haberl, Mielke, Brylla, Issekutz, Cabañas, Nelson (bib2) 2016; 530
Korbecki, Kojder, Barczak, Simińska, Gutowska, Chlubek, Baranowska-Bosiacka (bib40) 2020; 21
Morganti, Jopson, Liu, Gupta, Rosi (bib73) 2014; 9
Bachelerie, Ben-Baruch, Burkhardt, Combadiere, Farber, Graham, Horuk, Sparre-Ulrich, Locati, Luster (bib41) 2014; 66
Kurita, Kawahara, Asai, Ueki, Shin, Kirino (bib14) 2001; 23
Engelhardt, Ransohoff (bib33) 2012; 33
Wu, Li, Xu, Huang, Cheng, Huang, Jiang, Wu, Tang (bib98) 2017; 10
Turnquist, Harris, Harris (bib8) 2020; 2
Furuse, Nonoguchi, Kawabata, Miyatake, Kuroiwa (bib9) 2015; 48
Baddeley, Turner (bib94) 2005; 12
Wraith, Nicholson (bib1) 2012; 122
Hammond, Dufort, Dissing-Olesen, Giera, Young, Wysoker, Walker, Gergits, Segel, Nemesh (bib35) 2019; 50
Alves de Lima, Rustenhoven, Kipnis (bib61) 2020; 38
Pai, Tome-Garcia, Cheng, Nudelman, Beaumont, Ghatan, Panov, Caballero, Sarpong, Marcuse (bib24) 2022; 10
Finak, McDavid, Yajima, Deng, Gersuk, Shalek, Slichter, Miller, McElrath, Prlic (bib85) 2015; 16
Aibar, González-Blas, Moerman, Huynh-Thu, Imrichova, Hulselmans, Rambow, Marine, Geurts, Aerts (bib89) 2017; 14
Mrdjen, Pavlovic, Hartmann, Schreiner, Utz, Leung, Lelios, Heppner, Kipnis, Merkler (bib78) 2018; 48
Tian, Peng, Murugan, Feng, Liu, Eyo, Zhou, Mogilevsky, Wang, Wu (bib57) 2017; 37
Masuda, Sankowski, Staszewski, Prinz (bib36) 2020; 30
Butler, Hoffman, Smibert, Papalexi, Satija (bib83) 2018; 36
Sahasrabuddhe, Ghosh (bib42) 2022; 38
Carr, Roth, Luther, Rose, Springer (bib55) 1994; 91
Jordão, Sankowski, Brendecke, Sagar, Locatelli, Tai, Tay, Schramm, Armbruster, Hagemeyer (bib71) 2019; 363
Coifman, Lafon, Lee, Maggioni, Nadler, Warner, Zucker (bib107) 2005; 102
Gate, Tapp, Leventhal, Shahid, Nonninger, Yang, Strempfl, Unger, Fehlmann, Oh (bib54) 2021; 374
Salter, Stevens (bib65) 2017; 23
Ali, Arevalo, Zorofchian, Patrizz, Riascos, Tandon, Blanco, Ballester, Esquenazi (bib6) 2019; 21
Shen, Lin, Rong, Yang, Li, Cai, Xu, Xu, Tang (bib18) 2016; 94
Bennett, Bennett, Liddelow, Ajami, Zamanian, Fernhoff, Mulinyawe, Bohlen, Adil, Tucker (bib45) 2016; 113
Hickman, Izzy, Sen, Morsett, El Khoury (bib66) 2018; 21
(bib96) 2022; 2022
Morgan, Tergaonkar (bib104) 2022; 43
Serafini, Rosicarelli, Veroni, Mazzola, Aloisi (bib28) 2019; 93
Keren-Shaul, Spinrad, Weiner, Matcovitch-Natan, Dvir-Szternfeld, Ulland, David, Baruch, Lara-Astaiso, Toth (bib43) 2017; 169
Li, Cheng, Zhou, Darmanis, Neff, Okamoto, Gulati, Bennett, Sun, Clarke (bib44) 2019; 101
Carnero Contentti, Farez, Correale (bib76) 2019; 10
Junker, Ivanidze, Malotka, Eiglmeier, Lassmann, Wekerle, Meinl, Hohlfeld, Dornmair (bib75) 2007; 130
Wheeler, Clark, Tjon, Li, Zandee, Couturier, Watson, Scalisi, Alkwai, Rothhammer (bib23) 2020; 578
Sousa, Golebiewska, Poovathingal, Kaoma, Pires-Afonso, Martina, Coowar, Azuaje, Skupin, Balling (bib68) 2018; 19
Iadecola, Buckwalter, Anrather (bib3) 2020; 130
Winter, Loebel, Loeffler, Batchelor, Martinez-Lage, Vajkoczy, Dietrich (bib7) 2019; 21
Hwang, Jung, Kim, Lim, Oh, Kim, Ji, Joe, Cho, Han (bib13) 2006; 21
Serafini, Rosicarelli, Franciotta, Magliozzi, Reynolds, Cinque, Andreoni, Trivedi, Salvetti, Faggioni, Aloisi (bib27) 2007; 204
Vanlandewijck, He, Mäe, Andrae, Ando, Del Gaudio, Nahar, Lebouvier, Laviña, Gouveia (bib102) 2018; 554
Van den Berge, Roux de Bézieux, Street, Saelens, Cannoodt, Saeys, Dudoit, Clement (bib91) 2020; 11
McKim, Weber, Niraula, Sawicki, Liu, Jarrett, Ramirez-Chan, Wang, Roeth, Sucaldito (bib60) 2018; 23
Salter, Beggs (bib63) 2014; 158
Haghverdi, Büttner, Wolf, Buettner, Theis (bib90) 2016; 13
Schneider, Rasband, Eliceiri (bib95) 2012; 9
Moreno, Or-Geva, Aftab, Khanna, Croze, Steinman, Han (bib29) 2018; 5
Cronk, Filiano, Louveau, Marin, Marsh, Ji, Goldman, Smirnov, Geraci, Acton (bib72) 2018; 215
Borcherding, Bormann, Kraus (bib92) 2020; 9
Korsunsky, Millard, Fan, Slowikowski, Zhang, Wei, Baglaenko, Brenner, Loh, Raychaudhuri (bib84) 2019; 16
Efremova, Vento-Tormo, Teichmann, Vento-Tormo (bib34) 2020; 15
Chen, Chan, Le, Blanchard, Sun, Ma (bib30) 2019; 394
Calvo, Hopewell, Reinhold, Yeung (bib15) 1988; 61
Takenaka, Imanishi, Sasaki, Shimazaki, Sugiura, Kitagawa, Sekiyama, Yamamoto, Kazuno (bib5) 2003; 43
Yang, Yang, Li, Li, Wu, Cheng, Tang (bib16) 2017; 54
Finisguerra, Di Conza, Di Matteo, Serneels, Costa, Thompson, Wauters, Walmsley, Prenen, Granot (bib32) 2015; 522
Tang, Luo, Rong, Shi, Peng (bib4) 2012; 7
Bankhead, Loughrey, Fernández, Dombrowski, McArt, Dunne, McQuaid, Gray, Murray, Coleman (bib93) 2017; 7
Pijuan-Sala, Griffiths, Guibentif, Hiscock, Jawaid, Calero-Nieto, Mulas, Ibarra-Soria, Tyser, Ho (bib99) 2019; 566
Schafflick, Wolbert, Heming, Thomas, Hartlehnert, Börsch, Ricci, Martín-Salamanca, Li, Lu (bib105) 2021; 24
Yoritsune, Furuse, Kuwabara, Miyata, Nonoguchi, Kawabata, Hayasaki, Kuroiwa, Ono, Shibayama, Miyatake (bib19) 2014; 55
Brenner, Tiwari, Kapoor, Liu, Brock, Mayfield (bib22) 2020; 29
Lun, Bach, Marioni (bib100) 2016; 17
Ruffing, Sullivan, Sharmeen, Sodroski, Wu (bib39) 1998; 189
Lum, Low, Fan, Tan, Lee, Chan, Rénia, Ginhoux, Ng (bib58) 2017; 64
Kureshi, Hofman, Schneider, Chin, Apuzzo, Hinton (bib17) 1994; 35
Varvel, Neher, Bosch, Wang, Ransohoff, Miller, Dingledine (bib70) 2016; 113
Korin, Ben-Shaanan, Schiller, Dubovik, Azulay-Debby, Boshnak, Koren, Rolls (bib25) 2017; 20
Absinta, Maric, Gharagozloo, Garton, Smith, Jin, Fitzgerald, Song, Liu, Lin (bib21) 2021; 597
Peng, Lu, Li, Zhao, Wang, Hu, Xu, Shi, Zhou, Pennington (bib11) 2014; 16
Haghverdi, Buettner, Theis (bib38) 2015; 31
Gate, Saligrama, Leventhal, Yang, Unger, Middeldorp, Chen, Lehallier, Channappa, De Los Santos (bib26) 2020; 577
Ritzel, Crapser, Patel, Verma, Grenier, Chauhan, Jellison, McCullough (bib53) 2016; 196
Masuda, Sankowski, Staszewski, Böttcher, Amann, Sagar, Scheiwe, Nessler, Kunz, van Loo (bib67) 2019; 566
Hie, Cho, DeMeo, Bryson, Berger (bib106) 2019; 8
36863316 - Neuron. 2023 Mar 1;111(5):597-598
McCarthy (10.1016/j.neuron.2022.12.009_bib81) 2017; 33
Ruffing (10.1016/j.neuron.2022.12.009_bib39) 1998; 189
Baddeley (10.1016/j.neuron.2022.12.009_bib94) 2005; 12
Schneider (10.1016/j.neuron.2022.12.009_bib95) 2012; 9
Kurita (10.1016/j.neuron.2022.12.009_bib14) 2001; 23
Bachelerie (10.1016/j.neuron.2022.12.009_bib41) 2014; 66
Liu (10.1016/j.neuron.2022.12.009_bib37) 2020; 11
Iadecola (10.1016/j.neuron.2022.12.009_bib3) 2020; 130
Cronk (10.1016/j.neuron.2022.12.009_bib72) 2018; 215
Alves de Lima (10.1016/j.neuron.2022.12.009_bib61) 2020; 38
Hammond (10.1016/j.neuron.2022.12.009_bib35) 2019; 50
Held (10.1016/j.neuron.2022.12.009_bib77) 2015; 2
Ritzel (10.1016/j.neuron.2022.12.009_bib53) 2016; 196
Willing (10.1016/j.neuron.2022.12.009_bib47) 2012; 25
Satoh (10.1016/j.neuron.2022.12.009_bib46) 2016; 36
Chen (10.1016/j.neuron.2022.12.009_bib30) 2019; 394
Mildner (10.1016/j.neuron.2022.12.009_bib56) 2007; 10
Groh (10.1016/j.neuron.2022.12.009_bib51) 2021; 1
Wraith (10.1016/j.neuron.2022.12.009_bib1) 2012; 122
Hickman (10.1016/j.neuron.2022.12.009_bib66) 2018; 21
Hie (10.1016/j.neuron.2022.12.009_bib106) 2019; 8
Zhang (10.1016/j.neuron.2022.12.009_bib87) 2019; 47
Keren-Shaul (10.1016/j.neuron.2022.12.009_bib43) 2017; 169
Jordão (10.1016/j.neuron.2022.12.009_bib71) 2019; 363
Korin (10.1016/j.neuron.2022.12.009_bib25) 2017; 20
Ali (10.1016/j.neuron.2022.12.009_bib6) 2019; 21
Carr (10.1016/j.neuron.2022.12.009_bib55) 1994; 91
Van den Berge (10.1016/j.neuron.2022.12.009_bib91) 2020; 11
Bennett (10.1016/j.neuron.2022.12.009_bib45) 2016; 113
Tian (10.1016/j.neuron.2022.12.009_bib57) 2017; 37
Masuda (10.1016/j.neuron.2022.12.009_bib36) 2020; 30
Finisguerra (10.1016/j.neuron.2022.12.009_bib32) 2015; 522
Lum (10.1016/j.neuron.2022.12.009_bib58) 2017; 64
McKim (10.1016/j.neuron.2022.12.009_bib60) 2018; 23
Salter (10.1016/j.neuron.2022.12.009_bib63) 2014; 158
Schafflick (10.1016/j.neuron.2022.12.009_bib105) 2021; 24
Vargas (10.1016/j.neuron.2022.12.009_bib59) 2005; 57
Mracsko (10.1016/j.neuron.2022.12.009_bib52) 2014; 34
Calvo (10.1016/j.neuron.2022.12.009_bib15) 1988; 61
Lun (10.1016/j.neuron.2022.12.009_bib100) 2016; 17
Wu (10.1016/j.neuron.2022.12.009_bib101) 2017; 96
Tang (10.1016/j.neuron.2022.12.009_bib4) 2012; 7
Shen (10.1016/j.neuron.2022.12.009_bib18) 2016; 94
Absinta (10.1016/j.neuron.2022.12.009_bib21) 2021; 597
Salter (10.1016/j.neuron.2022.12.009_bib65) 2017; 23
Lake (10.1016/j.neuron.2022.12.009_bib103) 2018; 36
Takenaka (10.1016/j.neuron.2022.12.009_bib5) 2003; 43
Bankhead (10.1016/j.neuron.2022.12.009_bib93) 2017; 7
Cugurra (10.1016/j.neuron.2022.12.009_bib74) 2021; 373
Haghverdi (10.1016/j.neuron.2022.12.009_bib38) 2015; 31
Korbecki (10.1016/j.neuron.2022.12.009_bib40) 2020; 21
Mrdjen (10.1016/j.neuron.2022.12.009_bib78) 2018; 48
Wolock (10.1016/j.neuron.2022.12.009_bib88) 2019; 8
Sousa (10.1016/j.neuron.2022.12.009_bib68) 2018; 19
Huseby (10.1016/j.neuron.2022.12.009_bib49) 2012; 3
Chen (10.1016/j.neuron.2022.12.009_bib97) 2021; 19
Brenner (10.1016/j.neuron.2022.12.009_bib22) 2020; 29
Morgan (10.1016/j.neuron.2022.12.009_bib104) 2022; 43
Coifman (10.1016/j.neuron.2022.12.009_bib107) 2005; 102
Carnero Contentti (10.1016/j.neuron.2022.12.009_bib76) 2019; 10
Gonzalez (10.1016/j.neuron.2022.12.009_bib20) 2022; 185
Moreno (10.1016/j.neuron.2022.12.009_bib29) 2018; 5
Miyatake (10.1016/j.neuron.2022.12.009_bib10) 2015; 55
Gate (10.1016/j.neuron.2022.12.009_bib54) 2021; 374
Furuse (10.1016/j.neuron.2022.12.009_bib9) 2015; 48
Haghverdi (10.1016/j.neuron.2022.12.009_bib82) 2018; 36
Gate (10.1016/j.neuron.2022.12.009_bib26) 2020; 577
Winter (10.1016/j.neuron.2022.12.009_bib7) 2019; 21
Korsunsky (10.1016/j.neuron.2022.12.009_bib84) 2019; 16
Aibar (10.1016/j.neuron.2022.12.009_bib89) 2017; 14
Dulken (10.1016/j.neuron.2022.12.009_bib50) 2019; 571
Kureshi (10.1016/j.neuron.2022.12.009_bib17) 1994; 35
Morganti (10.1016/j.neuron.2022.12.009_bib73) 2014; 9
(10.1016/j.neuron.2022.12.009_bib96) 2022; 2022
Pai (10.1016/j.neuron.2022.12.009_bib24) 2022; 10
Junker (10.1016/j.neuron.2022.12.009_bib75) 2007; 130
He (10.1016/j.neuron.2022.12.009_bib31) 2020; 34
Masuda (10.1016/j.neuron.2022.12.009_bib67) 2019; 566
Borcherding (10.1016/j.neuron.2022.12.009_bib92) 2020; 9
Li (10.1016/j.neuron.2022.12.009_bib44) 2019; 101
Butler (10.1016/j.neuron.2022.12.009_bib83) 2018; 36
Xu (10.1016/j.neuron.2022.12.009_bib12) 2015; 50
Yang (10.1016/j.neuron.2022.12.009_bib16) 2017; 54
Varvel (10.1016/j.neuron.2022.12.009_bib70) 2016; 113
Pijuan-Sala (10.1016/j.neuron.2022.12.009_bib99) 2019; 566
Serafini (10.1016/j.neuron.2022.12.009_bib28) 2019; 93
Turnquist (10.1016/j.neuron.2022.12.009_bib8) 2020; 2
Wu (10.1016/j.neuron.2022.12.009_bib98) 2017; 10
Friese (10.1016/j.neuron.2022.12.009_bib48) 2009; 66
Schläger (10.1016/j.neuron.2022.12.009_bib2) 2016; 530
Peng (10.1016/j.neuron.2022.12.009_bib11) 2014; 16
Hwang (10.1016/j.neuron.2022.12.009_bib13) 2006; 21
Yoritsune (10.1016/j.neuron.2022.12.009_bib19) 2014; 55
Haghverdi (10.1016/j.neuron.2022.12.009_bib90) 2016; 13
Engelhardt (10.1016/j.neuron.2022.12.009_bib33) 2012; 33
Haruwaka (10.1016/j.neuron.2022.12.009_bib64) 2019; 10
Vanlandewijck (10.1016/j.neuron.2022.12.009_bib102) 2018; 554
Lun (10.1016/j.neuron.2022.12.009_bib79) 2019; 20
Tang (10.1016/j.neuron.2022.12.009_bib69) 2016; 53
Finak (10.1016/j.neuron.2022.12.009_bib85) 2015; 16
Sahasrabuddhe (10.1016/j.neuron.2022.12.009_bib42) 2022; 38
Subramanian (10.1016/j.neuron.2022.12.009_bib86) 2005; 102
Efremova (10.1016/j.neuron.2022.12.009_bib34) 2020; 15
Lun (10.1016/j.neuron.2022.12.009_bib80) 2016; 5
Yamada (10.1016/j.neuron.2022.12.009_bib108) 2015; 42
Serafini (10.1016/j.neuron.2022.12.009_bib27) 2007; 204
Rustenhoven (10.1016/j.neuron.2022.12.009_bib62) 2021; 184
Wheeler (10.1016/j.neuron.2022.12.009_bib23) 2020; 578
References_xml – volume: 11
  start-page: 3155
  year: 2020
  ident: bib37
  article-title: An entropy-based metric for assessing the purity of single cell populations
  publication-title: Nat. Commun.
  contributor:
    fullname: Zhang
– volume: 19
  start-page: 578
  year: 2021
  end-page: 583
  ident: bib97
  article-title: The genome sequence archive family: toward explosive data growth and diverse data types
  publication-title: Genomics Proteomics Bioinformatics
  contributor:
    fullname: Sun
– volume: 363
  start-page: eaat7554
  year: 2019
  ident: bib71
  article-title: Single-cell profiling identifies myeloid cell subsets with distinct fates during neuroinflammation
  publication-title: Science
  contributor:
    fullname: Hagemeyer
– volume: 38
  start-page: 110252
  year: 2022
  ident: bib42
  article-title: Cx3Cr1-Cre induction leads to microglial activation and IFN-1 signaling caused by DNA damage in early postnatal brain
  publication-title: Cell Rep.
  contributor:
    fullname: Ghosh
– volume: 38
  start-page: 597
  year: 2020
  end-page: 620
  ident: bib61
  article-title: Meningeal immunity and its function in maintenance of the central nervous system in health and disease
  publication-title: Annu. Rev. Immunol.
  contributor:
    fullname: Kipnis
– volume: 566
  start-page: 388
  year: 2019
  end-page: 392
  ident: bib67
  article-title: Spatial and temporal heterogeneity of mouse and human microglia at single-cell resolution
  publication-title: Nature
  contributor:
    fullname: van Loo
– volume: 16
  start-page: 528
  year: 2014
  end-page: 539
  ident: bib11
  article-title: Blockade of Kv1.3 channels ameliorates radiation-induced brain injury
  publication-title: Neuro. Oncol
  contributor:
    fullname: Pennington
– volume: 554
  start-page: 475
  year: 2018
  end-page: 480
  ident: bib102
  article-title: A molecular atlas of cell types and zonation in the brain vasculature
  publication-title: Nature
  contributor:
    fullname: Gouveia
– volume: 33
  start-page: 579
  year: 2012
  end-page: 589
  ident: bib33
  article-title: Capture, crawl, cross: the T cell code to breach the blood-brain barriers
  publication-title: Trends Immunol.
  contributor:
    fullname: Ransohoff
– volume: 64
  start-page: 914
  year: 2017
  end-page: 920
  ident: bib58
  article-title: Zika virus infects human fetal brain microglia and induces inflammation
  publication-title: Clin. Infect. Dis.
  contributor:
    fullname: Ng
– volume: 16
  start-page: 278
  year: 2015
  ident: bib85
  article-title: MAST: a flexible statistical framework for assessing transcriptional changes and characterizing heterogeneity in single-cell RNA sequencing data
  publication-title: Genome Biol.
  contributor:
    fullname: Prlic
– volume: 17
  start-page: 75
  year: 2016
  ident: bib100
  article-title: Pooling across cells to normalize single-cell RNA sequencing data with many zero counts
  publication-title: Genome Biol.
  contributor:
    fullname: Marioni
– volume: 36
  start-page: 70
  year: 2018
  end-page: 80
  ident: bib103
  article-title: Integrative single-cell analysis of transcriptional and epigenetic states in the human adult brain
  publication-title: Nat. Biotechnol.
  contributor:
    fullname: Kharchenko
– volume: 23
  start-page: 1018
  year: 2017
  end-page: 1027
  ident: bib65
  article-title: Microglia emerge as central players in brain disease
  publication-title: Nat. Med.
  contributor:
    fullname: Stevens
– volume: 1
  start-page: 357
  year: 2021
  end-page: 367
  ident: bib51
  article-title: Accumulation of cytotoxic T cells in the aged CNS leads to axon degeneration and contributes to cognitive and motor decline
  publication-title: Nat. Aging
  contributor:
    fullname: Martini
– volume: 10
  start-page: 1544
  year: 2007
  end-page: 1553
  ident: bib56
  article-title: Microglia in the adult brain arise from Ly-6ChiCCR2+ monocytes only under defined host conditions
  publication-title: Nat. Neurosci.
  contributor:
    fullname: Prinz
– volume: 14
  start-page: 1083
  year: 2017
  end-page: 1086
  ident: bib89
  article-title: SCENIC: single-cell regulatory network inference and clustering
  publication-title: Nat. Methods
  contributor:
    fullname: Aerts
– volume: 9
  start-page: 47
  year: 2020
  ident: bib92
  article-title: scRepertoire: an R-based toolkit for single-cell immune receptor analysis
  publication-title: F1000Res
  contributor:
    fullname: Kraus
– volume: 50
  start-page: 87
  year: 2015
  end-page: 100
  ident: bib12
  article-title: Extracellular ATP enhances radiation-induced brain injury through microglial activation and paracrine signaling via P2X7 receptor
  publication-title: Brain Behav. Immun.
  contributor:
    fullname: Tang
– volume: 530
  start-page: 349
  year: 2016
  end-page: 353
  ident: bib2
  article-title: Effector T-cell trafficking between the leptomeninges and the cerebrospinal fluid
  publication-title: Nature
  contributor:
    fullname: Nelson
– volume: 522
  start-page: 349
  year: 2015
  end-page: 353
  ident: bib32
  article-title: MET is required for the recruitment of anti-tumoural neutrophils
  publication-title: Nature
  contributor:
    fullname: Granot
– volume: 36
  start-page: 39
  year: 2016
  end-page: 49
  ident: bib46
  article-title: TMEM119 marks a subset of microglia in the human brain
  publication-title: Neuropathology
  contributor:
    fullname: Saito
– volume: 102
  start-page: 7426
  year: 2005
  end-page: 7431
  ident: bib107
  article-title: Geometric diffusions as a tool for harmonic analysis and structure definition of data: diffusion maps
  publication-title: Proc. Natl. Acad. Sci. USA
  contributor:
    fullname: Zucker
– volume: 48
  start-page: 183
  year: 2015
  end-page: 190
  ident: bib9
  article-title: Delayed brain radiation necrosis: pathological review and new molecular targets for treatment
  publication-title: Med. Mol. Morphol.
  contributor:
    fullname: Kuroiwa
– volume: 19
  start-page: e46171
  year: 2018
  ident: bib68
  article-title: Single-cell transcriptomics reveals distinct inflammation-induced microglia signatures
  publication-title: EMBO Rep.
  contributor:
    fullname: Balling
– volume: 9
  start-page: 671
  year: 2012
  end-page: 675
  ident: bib95
  article-title: NIH Image to ImageJ: 25 years of image analysis
  publication-title: Nat. Methods
  contributor:
    fullname: Eliceiri
– volume: 113
  start-page: E5665
  year: 2016
  end-page: E5674
  ident: bib70
  article-title: Infiltrating monocytes promote brain inflammation and exacerbate neuronal damage after status epilepticus
  publication-title: Proc. Natl. Acad. Sci. USA
  contributor:
    fullname: Dingledine
– volume: 21
  start-page: 457
  year: 2006
  end-page: 467
  ident: bib13
  article-title: Ionizing radiation induces astrocyte gliosis through microglia activation
  publication-title: Neurobiol. Dis.
  contributor:
    fullname: Han
– volume: 54
  start-page: 1022
  year: 2017
  end-page: 1032
  ident: bib16
  article-title: Pathophysiological responses in rat and mouse models of radiation-induced brain injury
  publication-title: Mol. Neurobiol.
  contributor:
    fullname: Tang
– volume: 30
  start-page: 1271
  year: 2020
  end-page: 1281
  ident: bib36
  article-title: Microglia heterogeneity in the single-cell era
  publication-title: Cell Rep.
  contributor:
    fullname: Prinz
– volume: 93
  year: 2019
  ident: bib28
  article-title: Epstein-Barr virus-specific CD8 T cells selectively infiltrate the brain in multiple sclerosis and interact locally with virus-infected cells: clue for a virus-driven immunopathological mechanism
  publication-title: J. Virol.
  contributor:
    fullname: Aloisi
– volume: 94
  start-page: 1113
  year: 2016
  end-page: 1120
  ident: bib18
  article-title: Temporal cerebral microbleeds are associated with radiation necrosis and cognitive dysfunction in patients treated for nasopharyngeal carcinoma
  publication-title: Int. J. Radiat. Oncol. Biol. Phys.
  contributor:
    fullname: Tang
– volume: 196
  start-page: 3318
  year: 2016
  end-page: 3330
  ident: bib53
  article-title: Age-associated resident memory CD8 T cells in the central nervous system are primed to potentiate inflammation after ischemic brain injury
  publication-title: J. Immunol.
  contributor:
    fullname: McCullough
– volume: 50
  start-page: 253
  year: 2019
  end-page: 271.e6
  ident: bib35
  article-title: Single-cell RNA sequencing of microglia throughout the mouse lifespan and in the injured brain reveals complex cell-state changes
  publication-title: Immunity
  contributor:
    fullname: Nemesh
– volume: 61
  start-page: 1043
  year: 1988
  end-page: 1052
  ident: bib15
  article-title: Time- and dose-related changes in the white matter of the rat brain after single doses of X rays
  publication-title: Br. J. Radiol.
  contributor:
    fullname: Yeung
– volume: 394
  start-page: 64
  year: 2019
  end-page: 80
  ident: bib30
  article-title: Nasopharyngeal carcinoma
  publication-title: Lancet
  contributor:
    fullname: Ma
– volume: 96
  start-page: 313
  year: 2017
  end-page: 329.e6
  ident: bib101
  article-title: Detecting activated cell populations using single-cell RNA-seq
  publication-title: Neuron
  contributor:
    fullname: Hong
– volume: 577
  start-page: 399
  year: 2020
  end-page: 404
  ident: bib26
  article-title: Clonally expanded CD8 T cells patrol the cerebrospinal fluid in Alzheimer's disease
  publication-title: Nature
  contributor:
    fullname: De Los Santos
– volume: 20
  start-page: 1300
  year: 2017
  end-page: 1309
  ident: bib25
  article-title: High-dimensional, single-cell characterization of the brain's immune compartment
  publication-title: Nat. Neurosci.
  contributor:
    fullname: Rolls
– volume: 5
  start-page: e466
  year: 2018
  ident: bib29
  article-title: Molecular signature of Epstein-Barr virus infection in MS brain lesions
  publication-title: Neurol. Neuroimmunol. Neuroinflamm.
  contributor:
    fullname: Han
– volume: 91
  start-page: 3652
  year: 1994
  end-page: 3656
  ident: bib55
  article-title: Monocyte chemoattractant protein 1 acts as a T-lymphocyte chemoattractant
  publication-title: Proc. Natl. Acad. Sci. USA
  contributor:
    fullname: Springer
– volume: 7
  start-page: 16878
  year: 2017
  ident: bib93
  article-title: QuPath: open source software for digital pathology image analysis
  publication-title: Sci. Rep.
  contributor:
    fullname: Coleman
– volume: 13
  start-page: 845
  year: 2016
  end-page: 848
  ident: bib90
  article-title: Diffusion pseudotime robustly reconstructs lineage branching
  publication-title: Nat. Methods
  contributor:
    fullname: Theis
– volume: 55
  start-page: 50
  year: 2015
  end-page: 59
  ident: bib10
  article-title: Pathophysiology, diagnosis, and treatment of radiation necrosis in the brain
  publication-title: Neurol. Med. Chir. (Tokyo)
  contributor:
    fullname: Kuroiwa
– volume: 10
  start-page: 149
  year: 2022
  ident: bib24
  article-title: High-resolution transcriptomics informs glial pathology in human temporal lobe epilepsy
  publication-title: Acta Neuropathol. Commun.
  contributor:
    fullname: Marcuse
– volume: 66
  start-page: 1
  year: 2014
  end-page: 79
  ident: bib41
  article-title: International union of basic and Clinical Pharmacology. LXXXIX. Update on the extended family of chemokine receptors and introducing a new nomenclature for atypical chemokine receptors
  publication-title: Pharmacol. Rev.
  contributor:
    fullname: Luster
– volume: 47
  start-page: D721
  year: 2019
  end-page: D728
  ident: bib87
  article-title: CellMarker: a manually curated resource of cell markers in human and mouse
  publication-title: Nucleic Acids Res.
  contributor:
    fullname: Yan
– volume: 11
  start-page: 1201
  year: 2020
  ident: bib91
  article-title: Trajectory-based differential expression analysis for single-cell sequencing data
  publication-title: Nat. Commun.
  contributor:
    fullname: Clement
– volume: 8
  start-page: 483
  year: 2019
  end-page: 493.e7
  ident: bib106
  article-title: Geometric sketching compactly summarizes the single-cell transcriptomic landscape
  publication-title: Cell Syst.
  contributor:
    fullname: Berger
– volume: 29
  start-page: 1144
  year: 2020
  end-page: 1153
  ident: bib22
  article-title: Single cell transcriptome profiling of the human alcohol-dependent brain
  publication-title: Hum. Mol. Genet.
  contributor:
    fullname: Mayfield
– volume: 184
  start-page: 1000
  year: 2021
  end-page: 1016.e27
  ident: bib62
  article-title: Functional characterization of the dural sinuses as a neuroimmune interface
  publication-title: Cell
  contributor:
    fullname: Baker
– volume: 53
  start-page: 1181
  year: 2016
  end-page: 1194
  ident: bib69
  article-title: Differential roles of M1 and M2 microglia in neurodegenerative diseases
  publication-title: Mol. Neurobiol.
  contributor:
    fullname: Le
– volume: 101
  start-page: 207
  year: 2019
  end-page: 223.e10
  ident: bib44
  article-title: Developmental heterogeneity of microglia and brain myeloid cells revealed by deep single-cell RNA sequencing
  publication-title: Neuron
  contributor:
    fullname: Clarke
– volume: 374
  start-page: 868
  year: 2021
  end-page: 874
  ident: bib54
  article-title: CD4(+) T cells contribute to neurodegeneration in Lewy body dementia
  publication-title: Science
  contributor:
    fullname: Oh
– volume: 33
  start-page: 1179
  year: 2017
  end-page: 1186
  ident: bib81
  article-title: Scater: pre-processing, quality control, normalization and visualization of single-cell RNA-seq data in R
  publication-title: Bioinformatics
  contributor:
    fullname: Wills
– volume: 8
  start-page: 281
  year: 2019
  end-page: 291.e9
  ident: bib88
  article-title: Scrublet: computational identification of cell doublets in single-cell transcriptomic data
  publication-title: Cell Syst.
  contributor:
    fullname: Klein
– volume: 23
  start-page: 869
  year: 2001
  end-page: 874
  ident: bib14
  article-title: Radiation-induced apoptosis of oligodendrocytes in the adult rat brain
  publication-title: Neurol. Res.
  contributor:
    fullname: Kirino
– volume: 10
  start-page: 2690
  year: 2019
  ident: bib76
  article-title: Mucosal-associated invariant T cell features and TCR repertoire characteristics during the course of multiple sclerosis
  publication-title: Front. Immunol.
  contributor:
    fullname: Correale
– volume: 20
  start-page: 63
  year: 2019
  ident: bib79
  article-title: EmptyDrops: distinguishing cells from empty droplets in droplet-based single-cell RNA sequencing data
  publication-title: Genome Biol.
  contributor:
    fullname: Marioni
– volume: 43
  start-page: 210
  year: 2022
  end-page: 229
  ident: bib104
  article-title: Unraveling B cell trajectories at single cell resolution
  publication-title: Trends Immunol.
  contributor:
    fullname: Tergaonkar
– volume: 42
  start-page: 379
  year: 2015
  end-page: 390
  ident: bib108
  article-title: Suppression of Fcγ-receptor-mediated antibody effector function during persistent viral infection
  publication-title: Immunity
  contributor:
    fullname: Brooks
– volume: 122
  start-page: 1172
  year: 2012
  end-page: 1179
  ident: bib1
  article-title: The adaptive immune system in diseases of the central nervous system
  publication-title: J. Clin. Invest.
  contributor:
    fullname: Nicholson
– volume: 7
  start-page: e36529
  year: 2012
  ident: bib4
  article-title: Psychological disorders, cognitive dysfunction and quality of life in nasopharyngeal carcinoma patients with radiation-induced brain injury
  publication-title: PLoS One
  contributor:
    fullname: Peng
– volume: 16
  start-page: 1289
  year: 2019
  end-page: 1296
  ident: bib84
  article-title: Fast, sensitive and accurate integration of single-cell data with Harmony
  publication-title: Nat. Methods
  contributor:
    fullname: Raychaudhuri
– volume: 21
  start-page: 66
  year: 2019
  ident: bib6
  article-title: Cerebral radiation necrosis: incidence, pathogenesis, diagnostic challenges, and future opportunities
  publication-title: Curr. Oncol. Rep.
  contributor:
    fullname: Esquenazi
– volume: 204
  start-page: 2899
  year: 2007
  end-page: 2912
  ident: bib27
  article-title: Dysregulated Epstein-Barr virus infection in the multiple sclerosis brain
  publication-title: J. Exp. Med.
  contributor:
    fullname: Aloisi
– volume: 25
  start-page: 316
  year: 2012
  end-page: 321
  ident: bib47
  article-title: CD8-mediated inflammatory central nervous system disorders
  publication-title: Curr. Opin. Neurol.
  contributor:
    fullname: Friese
– volume: 10
  start-page: 20
  year: 2017
  ident: bib98
  article-title: TREM2 protects against cerebral ischemia/reperfusion injury
  publication-title: Mol. Brain
  contributor:
    fullname: Tang
– volume: 15
  start-page: 1484
  year: 2020
  end-page: 1506
  ident: bib34
  article-title: CellPhoneDB: inferring cell-cell communication from combined expression of multi-subunit ligand-receptor complexes
  publication-title: Nat. Protoc.
  contributor:
    fullname: Vento-Tormo
– volume: 35
  start-page: 822
  year: 1994
  end-page: 829
  ident: bib17
  article-title: Cytokine expression in radiation-induced delayed cerebral injury
  publication-title: Neurosurgery
  contributor:
    fullname: Hinton
– volume: 215
  start-page: 1627
  year: 2018
  end-page: 1647
  ident: bib72
  article-title: Peripherally derived macrophages can engraft the brain independent of irradiation and maintain an identity distinct from microglia
  publication-title: J. Exp. Med.
  contributor:
    fullname: Acton
– volume: 34
  start-page: 16784
  year: 2014
  end-page: 16795
  ident: bib52
  article-title: Antigen dependently activated cluster of differentiation 8-positive T cells cause perforin-mediated neurotoxicity in experimental stroke
  publication-title: J. Neurosci.
  contributor:
    fullname: Veltkamp
– volume: 66
  start-page: 132
  year: 2009
  end-page: 141
  ident: bib48
  article-title: Pathogenic CD8+ T cells in multiple sclerosis
  publication-title: Ann. Neurol.
  contributor:
    fullname: Fugger
– volume: 578
  start-page: 593
  year: 2020
  end-page: 599
  ident: bib23
  article-title: MAFG-driven astrocytes promote CNS inflammation
  publication-title: Nature
  contributor:
    fullname: Rothhammer
– volume: 57
  start-page: 67
  year: 2005
  end-page: 81
  ident: bib59
  article-title: Neuroglial activation and neuroinflammation in the brain of patients with autism
  publication-title: Ann. Neurol.
  contributor:
    fullname: Pardo
– volume: 36
  start-page: 421
  year: 2018
  end-page: 427
  ident: bib82
  article-title: Batch effects in single-cell RNA-sequencing data are corrected by matching mutual nearest neighbors
  publication-title: Nat. Biotechnol.
  contributor:
    fullname: Marioni
– volume: 2
  start-page: e107
  year: 2015
  ident: bib77
  article-title: αβ T-cell receptors from multiple sclerosis brain lesions show MAIT cell-related features
  publication-title: Neurol. Neuroimmunol. Neuroinflamm.
  contributor:
    fullname: Moser
– volume: 55
  start-page: 803
  year: 2014
  end-page: 811
  ident: bib19
  article-title: Inflammation as well as angiogenesis may participate in the pathophysiology of brain radiation necrosis
  publication-title: J. Radiat. Res.
  contributor:
    fullname: Miyatake
– volume: 23
  start-page: 1421
  year: 2018
  end-page: 1431
  ident: bib60
  article-title: Microglial recruitment of IL-1β-producing monocytes to brain endothelium causes stress-induced anxiety
  publication-title: Mol. Psychiatry
  contributor:
    fullname: Sucaldito
– volume: 597
  start-page: 709
  year: 2021
  end-page: 714
  ident: bib21
  article-title: A lymphocyte-microglia-astrocyte axis in chronic active multiple sclerosis
  publication-title: Nature
  contributor:
    fullname: Lin
– volume: 21
  start-page: 1359
  year: 2018
  end-page: 1369
  ident: bib66
  article-title: Microglia in neurodegeneration
  publication-title: Nat. Neurosci.
  contributor:
    fullname: El Khoury
– volume: 169
  start-page: 1276
  year: 2017
  end-page: 1290.e17
  ident: bib43
  article-title: A unique microglia type associated with restricting development of Alzheimer's disease
  publication-title: Cell
  contributor:
    fullname: Toth
– volume: 130
  start-page: 2789
  year: 2007
  end-page: 2799
  ident: bib75
  article-title: Multiple sclerosis: T-cell receptor expression in distinct brain regions
  publication-title: Brain
  contributor:
    fullname: Dornmair
– volume: 113
  start-page: E1738
  year: 2016
  end-page: E1746
  ident: bib45
  article-title: New tools for studying microglia in the mouse and human CNS
  publication-title: Proc. Natl. Acad. Sci. USA
  contributor:
    fullname: Tucker
– volume: 5
  start-page: 2122
  year: 2016
  ident: bib80
  article-title: A step-by-step workflow for low-level analysis of single-cell RNA-seq data with Bioconductor
  publication-title: F1000Res
  contributor:
    fullname: Marioni
– volume: 48
  start-page: 380
  year: 2018
  end-page: 395.e6
  ident: bib78
  article-title: High-dimensional single-cell mapping of central nervous system immune cells reveals distinct myeloid subsets in health, aging, and disease
  publication-title: Immunity
  contributor:
    fullname: Merkler
– volume: 43
  start-page: 391
  year: 2003
  end-page: 395
  ident: bib5
  article-title: Delayed radiation necrosis with extensive brain edema after gamma knife radiosurgery for multiple cerebral cavernous malformations--case report
  publication-title: Neurol. Med. Chir. (Tokyo)
  contributor:
    fullname: Kazuno
– volume: 34
  start-page: 13361
  year: 2020
  end-page: 13375
  ident: bib31
  article-title: Gamma ray-induced glial activation and neuronal loss occur before the delayed onset of brain necrosis
  publication-title: FASEB J.
  contributor:
    fullname: Xie
– volume: 158
  start-page: 15
  year: 2014
  end-page: 24
  ident: bib63
  article-title: Sublime microglia: expanding roles for the guardians of the CNS
  publication-title: Cell
  contributor:
    fullname: Beggs
– volume: 373
  start-page: eabf7844
  year: 2021
  ident: bib74
  article-title: Skull and vertebral bone marrow are myeloid cell reservoirs for the meninges and CNS parenchyma
  publication-title: Science
  contributor:
    fullname: Blackburn
– volume: 10
  start-page: 5816
  year: 2019
  ident: bib64
  article-title: Dual microglia effects on blood brain barrier permeability induced by systemic inflammation
  publication-title: Nat. Commun.
  contributor:
    fullname: Kiyama
– volume: 189
  start-page: 160
  year: 1998
  end-page: 168
  ident: bib39
  article-title: CCR5 has an expanded ligand-binding repertoire and is the primary receptor used by MCP-2 on activated T cells
  publication-title: Cell. Immunol.
  contributor:
    fullname: Wu
– volume: 571
  start-page: 205
  year: 2019
  end-page: 210
  ident: bib50
  article-title: Single-cell analysis reveals T cell infiltration in old neurogenic niches
  publication-title: Nature
  contributor:
    fullname: Pluvinage
– volume: 566
  start-page: 490
  year: 2019
  end-page: 495
  ident: bib99
  article-title: A single-cell molecular map of mouse gastrulation and early organogenesis
  publication-title: Nature
  contributor:
    fullname: Ho
– volume: 21
  start-page: 5647
  year: 2020
  ident: bib40
  article-title: Hypoxia alters the expression of CC chemokines and CC chemokine receptors in a tumor-A literature review
  publication-title: Int. J. Mol. Sci.
  contributor:
    fullname: Baranowska-Bosiacka
– volume: 12
  start-page: 1
  year: 2005
  end-page: 42
  ident: bib94
  article-title: spatstat: an R package for Analyzing Spatial Point Patterns
  publication-title: J. Stat. Software
  contributor:
    fullname: Turner
– volume: 130
  start-page: 2777
  year: 2020
  end-page: 2788
  ident: bib3
  article-title: Immune responses to stroke: mechanisms, modulation, and therapeutic potential
  publication-title: J. Clin. Invest.
  contributor:
    fullname: Anrather
– volume: 36
  start-page: 411
  year: 2018
  end-page: 420
  ident: bib83
  article-title: Integrating single-cell transcriptomic data across different conditions, technologies, and species
  publication-title: Nat. Biotechnol.
  contributor:
    fullname: Satija
– volume: 31
  start-page: 2989
  year: 2015
  end-page: 2998
  ident: bib38
  article-title: Diffusion maps for high-dimensional single-cell analysis of differentiation data
  publication-title: Bioinformatics
  contributor:
    fullname: Theis
– volume: 37
  start-page: 7878
  year: 2017
  end-page: 7892
  ident: bib57
  article-title: Chemokine CCL2–CCR2 signaling induces neuronal cell death via STAT3 activation and IL-1β production after status epilepticus
  publication-title: J. Neurosci.
  contributor:
    fullname: Wu
– volume: 9
  start-page: e93650
  year: 2014
  ident: bib73
  article-title: Cranial irradiation alters the brain's microenvironment and permits CCR2+ macrophage infiltration
  publication-title: PLoS One
  contributor:
    fullname: Rosi
– volume: 185
  start-page: 729
  year: 2022
  end-page: 745.e20
  ident: bib20
  article-title: Cellular architecture of human brain metastases
  publication-title: Cell
  contributor:
    fullname: van Gogh
– volume: 2
  start-page: vdaa057
  year: 2020
  ident: bib8
  article-title: Radiation-induced brain injury: current concepts and therapeutic strategies targeting neuroinflammation
  publication-title: Neurooncol. Adv.
  contributor:
    fullname: Harris
– volume: 102
  start-page: 15545
  year: 2005
  end-page: 15550
  ident: bib86
  article-title: Gene set enrichment analysis: a knowledge-based approach for interpreting genome-wide expression profiles
  publication-title: Proc. Natl. Acad. Sci. USA
  contributor:
    fullname: Lander
– volume: 2022
  start-page: 50
  year: 2022
  ident: bib96
  article-title: D27-d38
  publication-title: Nucleic Acids Res.
– volume: 3
  start-page: 64
  year: 2012
  ident: bib49
  article-title: Pathogenic CD8 T cells in multiple sclerosis and its experimental models
  publication-title: Front. Immunol.
  contributor:
    fullname: Stadinski
– volume: 24
  start-page: 1225
  year: 2021
  end-page: 1234
  ident: bib105
  article-title: Single-cell profiling of CNS border compartment leukocytes reveals that B cells and their progenitors reside in non-diseased meninges
  publication-title: Nat. Neurosci.
  contributor:
    fullname: Lu
– volume: 21
  start-page: 1118
  year: 2019
  end-page: 1130
  ident: bib7
  article-title: Treatment-induced brain tissue necrosis: a clinical challenge in neuro-oncology
  publication-title: Neuro. Oncol
  contributor:
    fullname: Dietrich
– volume: 21
  start-page: 66
  year: 2019
  ident: 10.1016/j.neuron.2022.12.009_bib6
  article-title: Cerebral radiation necrosis: incidence, pathogenesis, diagnostic challenges, and future opportunities
  publication-title: Curr. Oncol. Rep.
  doi: 10.1007/s11912-019-0818-y
  contributor:
    fullname: Ali
– volume: 102
  start-page: 15545
  year: 2005
  ident: 10.1016/j.neuron.2022.12.009_bib86
  article-title: Gene set enrichment analysis: a knowledge-based approach for interpreting genome-wide expression profiles
  publication-title: Proc. Natl. Acad. Sci. USA
  doi: 10.1073/pnas.0506580102
  contributor:
    fullname: Subramanian
– volume: 93
  year: 2019
  ident: 10.1016/j.neuron.2022.12.009_bib28
  article-title: Epstein-Barr virus-specific CD8 T cells selectively infiltrate the brain in multiple sclerosis and interact locally with virus-infected cells: clue for a virus-driven immunopathological mechanism
  publication-title: J. Virol.
  doi: 10.1128/JVI.00980-19
  contributor:
    fullname: Serafini
– volume: 91
  start-page: 3652
  year: 1994
  ident: 10.1016/j.neuron.2022.12.009_bib55
  article-title: Monocyte chemoattractant protein 1 acts as a T-lymphocyte chemoattractant
  publication-title: Proc. Natl. Acad. Sci. USA
  doi: 10.1073/pnas.91.9.3652
  contributor:
    fullname: Carr
– volume: 64
  start-page: 914
  year: 2017
  ident: 10.1016/j.neuron.2022.12.009_bib58
  article-title: Zika virus infects human fetal brain microglia and induces inflammation
  publication-title: Clin. Infect. Dis.
  doi: 10.1093/cid/ciw878
  contributor:
    fullname: Lum
– volume: 7
  start-page: 16878
  year: 2017
  ident: 10.1016/j.neuron.2022.12.009_bib93
  article-title: QuPath: open source software for digital pathology image analysis
  publication-title: Sci. Rep.
  doi: 10.1038/s41598-017-17204-5
  contributor:
    fullname: Bankhead
– volume: 3
  start-page: 64
  year: 2012
  ident: 10.1016/j.neuron.2022.12.009_bib49
  article-title: Pathogenic CD8 T cells in multiple sclerosis and its experimental models
  publication-title: Front. Immunol.
  doi: 10.3389/fimmu.2012.00064
  contributor:
    fullname: Huseby
– volume: 19
  start-page: e46171
  year: 2018
  ident: 10.1016/j.neuron.2022.12.009_bib68
  article-title: Single-cell transcriptomics reveals distinct inflammation-induced microglia signatures
  publication-title: EMBO Rep.
  doi: 10.15252/embr.201846171
  contributor:
    fullname: Sousa
– volume: 8
  start-page: 281
  year: 2019
  ident: 10.1016/j.neuron.2022.12.009_bib88
  article-title: Scrublet: computational identification of cell doublets in single-cell transcriptomic data
  publication-title: Cell Syst.
  doi: 10.1016/j.cels.2018.11.005
  contributor:
    fullname: Wolock
– volume: 158
  start-page: 15
  year: 2014
  ident: 10.1016/j.neuron.2022.12.009_bib63
  article-title: Sublime microglia: expanding roles for the guardians of the CNS
  publication-title: Cell
  doi: 10.1016/j.cell.2014.06.008
  contributor:
    fullname: Salter
– volume: 33
  start-page: 1179
  year: 2017
  ident: 10.1016/j.neuron.2022.12.009_bib81
  article-title: Scater: pre-processing, quality control, normalization and visualization of single-cell RNA-seq data in R
  publication-title: Bioinformatics
  doi: 10.1093/bioinformatics/btw777
  contributor:
    fullname: McCarthy
– volume: 554
  start-page: 475
  year: 2018
  ident: 10.1016/j.neuron.2022.12.009_bib102
  article-title: A molecular atlas of cell types and zonation in the brain vasculature
  publication-title: Nature
  doi: 10.1038/nature25739
  contributor:
    fullname: Vanlandewijck
– volume: 566
  start-page: 490
  year: 2019
  ident: 10.1016/j.neuron.2022.12.009_bib99
  article-title: A single-cell molecular map of mouse gastrulation and early organogenesis
  publication-title: Nature
  doi: 10.1038/s41586-019-0933-9
  contributor:
    fullname: Pijuan-Sala
– volume: 16
  start-page: 278
  year: 2015
  ident: 10.1016/j.neuron.2022.12.009_bib85
  article-title: MAST: a flexible statistical framework for assessing transcriptional changes and characterizing heterogeneity in single-cell RNA sequencing data
  publication-title: Genome Biol.
  doi: 10.1186/s13059-015-0844-5
  contributor:
    fullname: Finak
– volume: 2022
  start-page: 50
  year: 2022
  ident: 10.1016/j.neuron.2022.12.009_bib96
  article-title: D27-d38
  publication-title: Nucleic Acids Res.
– volume: 20
  start-page: 63
  year: 2019
  ident: 10.1016/j.neuron.2022.12.009_bib79
  article-title: EmptyDrops: distinguishing cells from empty droplets in droplet-based single-cell RNA sequencing data
  publication-title: Genome Biol.
  doi: 10.1186/s13059-019-1662-y
  contributor:
    fullname: Lun
– volume: 597
  start-page: 709
  year: 2021
  ident: 10.1016/j.neuron.2022.12.009_bib21
  article-title: A lymphocyte-microglia-astrocyte axis in chronic active multiple sclerosis
  publication-title: Nature
  doi: 10.1038/s41586-021-03892-7
  contributor:
    fullname: Absinta
– volume: 21
  start-page: 1118
  year: 2019
  ident: 10.1016/j.neuron.2022.12.009_bib7
  article-title: Treatment-induced brain tissue necrosis: a clinical challenge in neuro-oncology
  publication-title: Neuro. Oncol
  doi: 10.1093/neuonc/noz048
  contributor:
    fullname: Winter
– volume: 204
  start-page: 2899
  year: 2007
  ident: 10.1016/j.neuron.2022.12.009_bib27
  article-title: Dysregulated Epstein-Barr virus infection in the multiple sclerosis brain
  publication-title: J. Exp. Med.
  doi: 10.1084/jem.20071030
  contributor:
    fullname: Serafini
– volume: 189
  start-page: 160
  year: 1998
  ident: 10.1016/j.neuron.2022.12.009_bib39
  article-title: CCR5 has an expanded ligand-binding repertoire and is the primary receptor used by MCP-2 on activated T cells
  publication-title: Cell. Immunol.
  doi: 10.1006/cimm.1998.1379
  contributor:
    fullname: Ruffing
– volume: 113
  start-page: E1738
  year: 2016
  ident: 10.1016/j.neuron.2022.12.009_bib45
  article-title: New tools for studying microglia in the mouse and human CNS
  publication-title: Proc. Natl. Acad. Sci. USA
  doi: 10.1073/pnas.1525528113
  contributor:
    fullname: Bennett
– volume: 113
  start-page: E5665
  year: 2016
  ident: 10.1016/j.neuron.2022.12.009_bib70
  article-title: Infiltrating monocytes promote brain inflammation and exacerbate neuronal damage after status epilepticus
  publication-title: Proc. Natl. Acad. Sci. USA
  doi: 10.1073/pnas.1604263113
  contributor:
    fullname: Varvel
– volume: 43
  start-page: 210
  year: 2022
  ident: 10.1016/j.neuron.2022.12.009_bib104
  article-title: Unraveling B cell trajectories at single cell resolution
  publication-title: Trends Immunol.
  doi: 10.1016/j.it.2022.01.003
  contributor:
    fullname: Morgan
– volume: 1
  start-page: 357
  year: 2021
  ident: 10.1016/j.neuron.2022.12.009_bib51
  article-title: Accumulation of cytotoxic T cells in the aged CNS leads to axon degeneration and contributes to cognitive and motor decline
  publication-title: Nat. Aging
  doi: 10.1038/s43587-021-00049-z
  contributor:
    fullname: Groh
– volume: 23
  start-page: 1421
  year: 2018
  ident: 10.1016/j.neuron.2022.12.009_bib60
  article-title: Microglial recruitment of IL-1β-producing monocytes to brain endothelium causes stress-induced anxiety
  publication-title: Mol. Psychiatry
  doi: 10.1038/mp.2017.64
  contributor:
    fullname: McKim
– volume: 101
  start-page: 207
  year: 2019
  ident: 10.1016/j.neuron.2022.12.009_bib44
  article-title: Developmental heterogeneity of microglia and brain myeloid cells revealed by deep single-cell RNA sequencing
  publication-title: Neuron
  doi: 10.1016/j.neuron.2018.12.006
  contributor:
    fullname: Li
– volume: 55
  start-page: 803
  year: 2014
  ident: 10.1016/j.neuron.2022.12.009_bib19
  article-title: Inflammation as well as angiogenesis may participate in the pathophysiology of brain radiation necrosis
  publication-title: J. Radiat. Res.
  doi: 10.1093/jrr/rru017
  contributor:
    fullname: Yoritsune
– volume: 566
  start-page: 388
  year: 2019
  ident: 10.1016/j.neuron.2022.12.009_bib67
  article-title: Spatial and temporal heterogeneity of mouse and human microglia at single-cell resolution
  publication-title: Nature
  doi: 10.1038/s41586-019-0924-x
  contributor:
    fullname: Masuda
– volume: 2
  start-page: e107
  year: 2015
  ident: 10.1016/j.neuron.2022.12.009_bib77
  article-title: αβ T-cell receptors from multiple sclerosis brain lesions show MAIT cell-related features
  publication-title: Neurol. Neuroimmunol. Neuroinflamm.
  doi: 10.1212/NXI.0000000000000107
  contributor:
    fullname: Held
– volume: 66
  start-page: 132
  year: 2009
  ident: 10.1016/j.neuron.2022.12.009_bib48
  article-title: Pathogenic CD8+ T cells in multiple sclerosis
  publication-title: Ann. Neurol.
  doi: 10.1002/ana.21744
  contributor:
    fullname: Friese
– volume: 7
  start-page: e36529
  year: 2012
  ident: 10.1016/j.neuron.2022.12.009_bib4
  article-title: Psychological disorders, cognitive dysfunction and quality of life in nasopharyngeal carcinoma patients with radiation-induced brain injury
  publication-title: PLoS One
  doi: 10.1371/journal.pone.0036529
  contributor:
    fullname: Tang
– volume: 373
  start-page: eabf7844
  year: 2021
  ident: 10.1016/j.neuron.2022.12.009_bib74
  article-title: Skull and vertebral bone marrow are myeloid cell reservoirs for the meninges and CNS parenchyma
  publication-title: Science
  doi: 10.1126/science.abf7844
  contributor:
    fullname: Cugurra
– volume: 10
  start-page: 5816
  year: 2019
  ident: 10.1016/j.neuron.2022.12.009_bib64
  article-title: Dual microglia effects on blood brain barrier permeability induced by systemic inflammation
  publication-title: Nat. Commun.
  doi: 10.1038/s41467-019-13812-z
  contributor:
    fullname: Haruwaka
– volume: 96
  start-page: 313
  year: 2017
  ident: 10.1016/j.neuron.2022.12.009_bib101
  article-title: Detecting activated cell populations using single-cell RNA-seq
  publication-title: Neuron
  doi: 10.1016/j.neuron.2017.09.026
  contributor:
    fullname: Wu
– volume: 10
  start-page: 20
  year: 2017
  ident: 10.1016/j.neuron.2022.12.009_bib98
  article-title: TREM2 protects against cerebral ischemia/reperfusion injury
  publication-title: Mol. Brain
  doi: 10.1186/s13041-017-0296-9
  contributor:
    fullname: Wu
– volume: 21
  start-page: 5647
  year: 2020
  ident: 10.1016/j.neuron.2022.12.009_bib40
  article-title: Hypoxia alters the expression of CC chemokines and CC chemokine receptors in a tumor-A literature review
  publication-title: Int. J. Mol. Sci.
  doi: 10.3390/ijms21165647
  contributor:
    fullname: Korbecki
– volume: 36
  start-page: 421
  year: 2018
  ident: 10.1016/j.neuron.2022.12.009_bib82
  article-title: Batch effects in single-cell RNA-sequencing data are corrected by matching mutual nearest neighbors
  publication-title: Nat. Biotechnol.
  doi: 10.1038/nbt.4091
  contributor:
    fullname: Haghverdi
– volume: 34
  start-page: 16784
  year: 2014
  ident: 10.1016/j.neuron.2022.12.009_bib52
  article-title: Antigen dependently activated cluster of differentiation 8-positive T cells cause perforin-mediated neurotoxicity in experimental stroke
  publication-title: J. Neurosci.
  doi: 10.1523/JNEUROSCI.1867-14.2014
  contributor:
    fullname: Mracsko
– volume: 11
  start-page: 1201
  year: 2020
  ident: 10.1016/j.neuron.2022.12.009_bib91
  article-title: Trajectory-based differential expression analysis for single-cell sequencing data
  publication-title: Nat. Commun.
  doi: 10.1038/s41467-020-14766-3
  contributor:
    fullname: Van den Berge
– volume: 374
  start-page: 868
  year: 2021
  ident: 10.1016/j.neuron.2022.12.009_bib54
  article-title: CD4(+) T cells contribute to neurodegeneration in Lewy body dementia
  publication-title: Science
  doi: 10.1126/science.abf7266
  contributor:
    fullname: Gate
– volume: 15
  start-page: 1484
  year: 2020
  ident: 10.1016/j.neuron.2022.12.009_bib34
  article-title: CellPhoneDB: inferring cell-cell communication from combined expression of multi-subunit ligand-receptor complexes
  publication-title: Nat. Protoc.
  doi: 10.1038/s41596-020-0292-x
  contributor:
    fullname: Efremova
– volume: 43
  start-page: 391
  year: 2003
  ident: 10.1016/j.neuron.2022.12.009_bib5
  article-title: Delayed radiation necrosis with extensive brain edema after gamma knife radiosurgery for multiple cerebral cavernous malformations--case report
  publication-title: Neurol. Med. Chir. (Tokyo)
  doi: 10.2176/nmc.43.391
  contributor:
    fullname: Takenaka
– volume: 12
  start-page: 1
  year: 2005
  ident: 10.1016/j.neuron.2022.12.009_bib94
  article-title: spatstat: an R package for Analyzing Spatial Point Patterns
  publication-title: J. Stat. Software
  contributor:
    fullname: Baddeley
– volume: 57
  start-page: 67
  year: 2005
  ident: 10.1016/j.neuron.2022.12.009_bib59
  article-title: Neuroglial activation and neuroinflammation in the brain of patients with autism
  publication-title: Ann. Neurol.
  doi: 10.1002/ana.20315
  contributor:
    fullname: Vargas
– volume: 5
  start-page: 2122
  year: 2016
  ident: 10.1016/j.neuron.2022.12.009_bib80
  article-title: A step-by-step workflow for low-level analysis of single-cell RNA-seq data with Bioconductor
  publication-title: F1000Res
  contributor:
    fullname: Lun
– volume: 54
  start-page: 1022
  year: 2017
  ident: 10.1016/j.neuron.2022.12.009_bib16
  article-title: Pathophysiological responses in rat and mouse models of radiation-induced brain injury
  publication-title: Mol. Neurobiol.
  doi: 10.1007/s12035-015-9628-x
  contributor:
    fullname: Yang
– volume: 37
  start-page: 7878
  year: 2017
  ident: 10.1016/j.neuron.2022.12.009_bib57
  article-title: Chemokine CCL2–CCR2 signaling induces neuronal cell death via STAT3 activation and IL-1β production after status epilepticus
  publication-title: J. Neurosci.
  doi: 10.1523/JNEUROSCI.0315-17.2017
  contributor:
    fullname: Tian
– volume: 185
  start-page: 729
  year: 2022
  ident: 10.1016/j.neuron.2022.12.009_bib20
  article-title: Cellular architecture of human brain metastases
  publication-title: Cell
  doi: 10.1016/j.cell.2021.12.043
  contributor:
    fullname: Gonzalez
– volume: 169
  start-page: 1276
  year: 2017
  ident: 10.1016/j.neuron.2022.12.009_bib43
  article-title: A unique microglia type associated with restricting development of Alzheimer's disease
  publication-title: Cell
  doi: 10.1016/j.cell.2017.05.018
  contributor:
    fullname: Keren-Shaul
– volume: 42
  start-page: 379
  year: 2015
  ident: 10.1016/j.neuron.2022.12.009_bib108
  article-title: Suppression of Fcγ-receptor-mediated antibody effector function during persistent viral infection
  publication-title: Immunity
  doi: 10.1016/j.immuni.2015.01.005
  contributor:
    fullname: Yamada
– volume: 522
  start-page: 349
  year: 2015
  ident: 10.1016/j.neuron.2022.12.009_bib32
  article-title: MET is required for the recruitment of anti-tumoural neutrophils
  publication-title: Nature
  doi: 10.1038/nature14407
  contributor:
    fullname: Finisguerra
– volume: 9
  start-page: e93650
  year: 2014
  ident: 10.1016/j.neuron.2022.12.009_bib73
  article-title: Cranial irradiation alters the brain's microenvironment and permits CCR2+ macrophage infiltration
  publication-title: PLoS One
  doi: 10.1371/journal.pone.0093650
  contributor:
    fullname: Morganti
– volume: 19
  start-page: 578
  year: 2021
  ident: 10.1016/j.neuron.2022.12.009_bib97
  article-title: The genome sequence archive family: toward explosive data growth and diverse data types
  publication-title: Genomics Proteomics Bioinformatics
  doi: 10.1016/j.gpb.2021.08.001
  contributor:
    fullname: Chen
– volume: 33
  start-page: 579
  year: 2012
  ident: 10.1016/j.neuron.2022.12.009_bib33
  article-title: Capture, crawl, cross: the T cell code to breach the blood-brain barriers
  publication-title: Trends Immunol.
  doi: 10.1016/j.it.2012.07.004
  contributor:
    fullname: Engelhardt
– volume: 36
  start-page: 70
  year: 2018
  ident: 10.1016/j.neuron.2022.12.009_bib103
  article-title: Integrative single-cell analysis of transcriptional and epigenetic states in the human adult brain
  publication-title: Nat. Biotechnol.
  doi: 10.1038/nbt.4038
  contributor:
    fullname: Lake
– volume: 122
  start-page: 1172
  year: 2012
  ident: 10.1016/j.neuron.2022.12.009_bib1
  article-title: The adaptive immune system in diseases of the central nervous system
  publication-title: J. Clin. Invest.
  doi: 10.1172/JCI58648
  contributor:
    fullname: Wraith
– volume: 48
  start-page: 380
  year: 2018
  ident: 10.1016/j.neuron.2022.12.009_bib78
  article-title: High-dimensional single-cell mapping of central nervous system immune cells reveals distinct myeloid subsets in health, aging, and disease
  publication-title: Immunity
  doi: 10.1016/j.immuni.2018.01.011
  contributor:
    fullname: Mrdjen
– volume: 38
  start-page: 110252
  year: 2022
  ident: 10.1016/j.neuron.2022.12.009_bib42
  article-title: Cx3Cr1-Cre induction leads to microglial activation and IFN-1 signaling caused by DNA damage in early postnatal brain
  publication-title: Cell Rep.
  doi: 10.1016/j.celrep.2021.110252
  contributor:
    fullname: Sahasrabuddhe
– volume: 21
  start-page: 1359
  year: 2018
  ident: 10.1016/j.neuron.2022.12.009_bib66
  article-title: Microglia in neurodegeneration
  publication-title: Nat. Neurosci.
  doi: 10.1038/s41593-018-0242-x
  contributor:
    fullname: Hickman
– volume: 53
  start-page: 1181
  year: 2016
  ident: 10.1016/j.neuron.2022.12.009_bib69
  article-title: Differential roles of M1 and M2 microglia in neurodegenerative diseases
  publication-title: Mol. Neurobiol.
  doi: 10.1007/s12035-014-9070-5
  contributor:
    fullname: Tang
– volume: 16
  start-page: 1289
  year: 2019
  ident: 10.1016/j.neuron.2022.12.009_bib84
  article-title: Fast, sensitive and accurate integration of single-cell data with Harmony
  publication-title: Nat. Methods
  doi: 10.1038/s41592-019-0619-0
  contributor:
    fullname: Korsunsky
– volume: 13
  start-page: 845
  year: 2016
  ident: 10.1016/j.neuron.2022.12.009_bib90
  article-title: Diffusion pseudotime robustly reconstructs lineage branching
  publication-title: Nat. Methods
  doi: 10.1038/nmeth.3971
  contributor:
    fullname: Haghverdi
– volume: 571
  start-page: 205
  year: 2019
  ident: 10.1016/j.neuron.2022.12.009_bib50
  article-title: Single-cell analysis reveals T cell infiltration in old neurogenic niches
  publication-title: Nature
  doi: 10.1038/s41586-019-1362-5
  contributor:
    fullname: Dulken
– volume: 10
  start-page: 2690
  year: 2019
  ident: 10.1016/j.neuron.2022.12.009_bib76
  article-title: Mucosal-associated invariant T cell features and TCR repertoire characteristics during the course of multiple sclerosis
  publication-title: Front. Immunol.
  doi: 10.3389/fimmu.2019.02690
  contributor:
    fullname: Carnero Contentti
– volume: 2
  start-page: vdaa057
  year: 2020
  ident: 10.1016/j.neuron.2022.12.009_bib8
  article-title: Radiation-induced brain injury: current concepts and therapeutic strategies targeting neuroinflammation
  publication-title: Neurooncol. Adv.
  contributor:
    fullname: Turnquist
– volume: 30
  start-page: 1271
  year: 2020
  ident: 10.1016/j.neuron.2022.12.009_bib36
  article-title: Microglia heterogeneity in the single-cell era
  publication-title: Cell Rep.
  doi: 10.1016/j.celrep.2020.01.010
  contributor:
    fullname: Masuda
– volume: 48
  start-page: 183
  year: 2015
  ident: 10.1016/j.neuron.2022.12.009_bib9
  article-title: Delayed brain radiation necrosis: pathological review and new molecular targets for treatment
  publication-title: Med. Mol. Morphol.
  doi: 10.1007/s00795-015-0123-2
  contributor:
    fullname: Furuse
– volume: 94
  start-page: 1113
  year: 2016
  ident: 10.1016/j.neuron.2022.12.009_bib18
  article-title: Temporal cerebral microbleeds are associated with radiation necrosis and cognitive dysfunction in patients treated for nasopharyngeal carcinoma
  publication-title: Int. J. Radiat. Oncol. Biol. Phys.
  doi: 10.1016/j.ijrobp.2015.11.037
  contributor:
    fullname: Shen
– volume: 184
  start-page: 1000
  year: 2021
  ident: 10.1016/j.neuron.2022.12.009_bib62
  article-title: Functional characterization of the dural sinuses as a neuroimmune interface
  publication-title: Cell
  doi: 10.1016/j.cell.2020.12.040
  contributor:
    fullname: Rustenhoven
– volume: 530
  start-page: 349
  year: 2016
  ident: 10.1016/j.neuron.2022.12.009_bib2
  article-title: Effector T-cell trafficking between the leptomeninges and the cerebrospinal fluid
  publication-title: Nature
  doi: 10.1038/nature16939
  contributor:
    fullname: Schläger
– volume: 16
  start-page: 528
  year: 2014
  ident: 10.1016/j.neuron.2022.12.009_bib11
  article-title: Blockade of Kv1.3 channels ameliorates radiation-induced brain injury
  publication-title: Neuro. Oncol
  doi: 10.1093/neuonc/not221
  contributor:
    fullname: Peng
– volume: 10
  start-page: 149
  year: 2022
  ident: 10.1016/j.neuron.2022.12.009_bib24
  article-title: High-resolution transcriptomics informs glial pathology in human temporal lobe epilepsy
  publication-title: Acta Neuropathol. Commun.
  doi: 10.1186/s40478-022-01453-1
  contributor:
    fullname: Pai
– volume: 61
  start-page: 1043
  year: 1988
  ident: 10.1016/j.neuron.2022.12.009_bib15
  article-title: Time- and dose-related changes in the white matter of the rat brain after single doses of X rays
  publication-title: Br. J. Radiol.
  doi: 10.1259/0007-1285-61-731-1043
  contributor:
    fullname: Calvo
– volume: 215
  start-page: 1627
  year: 2018
  ident: 10.1016/j.neuron.2022.12.009_bib72
  article-title: Peripherally derived macrophages can engraft the brain independent of irradiation and maintain an identity distinct from microglia
  publication-title: J. Exp. Med.
  doi: 10.1084/jem.20180247
  contributor:
    fullname: Cronk
– volume: 5
  start-page: e466
  year: 2018
  ident: 10.1016/j.neuron.2022.12.009_bib29
  article-title: Molecular signature of Epstein-Barr virus infection in MS brain lesions
  publication-title: Neurol. Neuroimmunol. Neuroinflamm.
  doi: 10.1212/NXI.0000000000000466
  contributor:
    fullname: Moreno
– volume: 50
  start-page: 253
  year: 2019
  ident: 10.1016/j.neuron.2022.12.009_bib35
  article-title: Single-cell RNA sequencing of microglia throughout the mouse lifespan and in the injured brain reveals complex cell-state changes
  publication-title: Immunity
  doi: 10.1016/j.immuni.2018.11.004
  contributor:
    fullname: Hammond
– volume: 9
  start-page: 47
  year: 2020
  ident: 10.1016/j.neuron.2022.12.009_bib92
  article-title: scRepertoire: an R-based toolkit for single-cell immune receptor analysis
  publication-title: F1000Res
  doi: 10.12688/f1000research.22139.1
  contributor:
    fullname: Borcherding
– volume: 394
  start-page: 64
  year: 2019
  ident: 10.1016/j.neuron.2022.12.009_bib30
  article-title: Nasopharyngeal carcinoma
  publication-title: Lancet
  doi: 10.1016/S0140-6736(19)30956-0
  contributor:
    fullname: Chen
– volume: 196
  start-page: 3318
  year: 2016
  ident: 10.1016/j.neuron.2022.12.009_bib53
  article-title: Age-associated resident memory CD8 T cells in the central nervous system are primed to potentiate inflammation after ischemic brain injury
  publication-title: J. Immunol.
  doi: 10.4049/jimmunol.1502021
  contributor:
    fullname: Ritzel
– volume: 363
  start-page: eaat7554
  year: 2019
  ident: 10.1016/j.neuron.2022.12.009_bib71
  article-title: Single-cell profiling identifies myeloid cell subsets with distinct fates during neuroinflammation
  publication-title: Science
  doi: 10.1126/science.aat7554
  contributor:
    fullname: Jordão
– volume: 14
  start-page: 1083
  year: 2017
  ident: 10.1016/j.neuron.2022.12.009_bib89
  article-title: SCENIC: single-cell regulatory network inference and clustering
  publication-title: Nat. Methods
  doi: 10.1038/nmeth.4463
  contributor:
    fullname: Aibar
– volume: 36
  start-page: 39
  year: 2016
  ident: 10.1016/j.neuron.2022.12.009_bib46
  article-title: TMEM119 marks a subset of microglia in the human brain
  publication-title: Neuropathology
  doi: 10.1111/neup.12235
  contributor:
    fullname: Satoh
– volume: 11
  start-page: 3155
  year: 2020
  ident: 10.1016/j.neuron.2022.12.009_bib37
  article-title: An entropy-based metric for assessing the purity of single cell populations
  publication-title: Nat. Commun.
  doi: 10.1038/s41467-020-16904-3
  contributor:
    fullname: Liu
– volume: 23
  start-page: 1018
  year: 2017
  ident: 10.1016/j.neuron.2022.12.009_bib65
  article-title: Microglia emerge as central players in brain disease
  publication-title: Nat. Med.
  doi: 10.1038/nm.4397
  contributor:
    fullname: Salter
– volume: 8
  start-page: 483
  year: 2019
  ident: 10.1016/j.neuron.2022.12.009_bib106
  article-title: Geometric sketching compactly summarizes the single-cell transcriptomic landscape
  publication-title: Cell Syst.
  doi: 10.1016/j.cels.2019.05.003
  contributor:
    fullname: Hie
– volume: 17
  start-page: 75
  year: 2016
  ident: 10.1016/j.neuron.2022.12.009_bib100
  article-title: Pooling across cells to normalize single-cell RNA sequencing data with many zero counts
  publication-title: Genome Biol.
  doi: 10.1186/s13059-016-0947-7
  contributor:
    fullname: Lun
– volume: 102
  start-page: 7426
  year: 2005
  ident: 10.1016/j.neuron.2022.12.009_bib107
  article-title: Geometric diffusions as a tool for harmonic analysis and structure definition of data: diffusion maps
  publication-title: Proc. Natl. Acad. Sci. USA
  doi: 10.1073/pnas.0500334102
  contributor:
    fullname: Coifman
– volume: 24
  start-page: 1225
  year: 2021
  ident: 10.1016/j.neuron.2022.12.009_bib105
  article-title: Single-cell profiling of CNS border compartment leukocytes reveals that B cells and their progenitors reside in non-diseased meninges
  publication-title: Nat. Neurosci.
  doi: 10.1038/s41593-021-00880-y
  contributor:
    fullname: Schafflick
– volume: 130
  start-page: 2789
  year: 2007
  ident: 10.1016/j.neuron.2022.12.009_bib75
  article-title: Multiple sclerosis: T-cell receptor expression in distinct brain regions
  publication-title: Brain
  doi: 10.1093/brain/awm214
  contributor:
    fullname: Junker
– volume: 47
  start-page: D721
  year: 2019
  ident: 10.1016/j.neuron.2022.12.009_bib87
  article-title: CellMarker: a manually curated resource of cell markers in human and mouse
  publication-title: Nucleic Acids Res.
  doi: 10.1093/nar/gky900
  contributor:
    fullname: Zhang
– volume: 38
  start-page: 597
  year: 2020
  ident: 10.1016/j.neuron.2022.12.009_bib61
  article-title: Meningeal immunity and its function in maintenance of the central nervous system in health and disease
  publication-title: Annu. Rev. Immunol.
  doi: 10.1146/annurev-immunol-102319-103410
  contributor:
    fullname: Alves de Lima
– volume: 29
  start-page: 1144
  year: 2020
  ident: 10.1016/j.neuron.2022.12.009_bib22
  article-title: Single cell transcriptome profiling of the human alcohol-dependent brain
  publication-title: Hum. Mol. Genet.
  doi: 10.1093/hmg/ddaa038
  contributor:
    fullname: Brenner
– volume: 130
  start-page: 2777
  year: 2020
  ident: 10.1016/j.neuron.2022.12.009_bib3
  article-title: Immune responses to stroke: mechanisms, modulation, and therapeutic potential
  publication-title: J. Clin. Invest.
  doi: 10.1172/JCI135530
  contributor:
    fullname: Iadecola
– volume: 36
  start-page: 411
  year: 2018
  ident: 10.1016/j.neuron.2022.12.009_bib83
  article-title: Integrating single-cell transcriptomic data across different conditions, technologies, and species
  publication-title: Nat. Biotechnol.
  doi: 10.1038/nbt.4096
  contributor:
    fullname: Butler
– volume: 35
  start-page: 822
  year: 1994
  ident: 10.1016/j.neuron.2022.12.009_bib17
  article-title: Cytokine expression in radiation-induced delayed cerebral injury
  publication-title: Neurosurgery
  doi: 10.1227/00006123-199411000-00004
  contributor:
    fullname: Kureshi
– volume: 34
  start-page: 13361
  year: 2020
  ident: 10.1016/j.neuron.2022.12.009_bib31
  article-title: Gamma ray-induced glial activation and neuronal loss occur before the delayed onset of brain necrosis
  publication-title: FASEB J.
  doi: 10.1096/fj.202000365RR
  contributor:
    fullname: He
– volume: 50
  start-page: 87
  year: 2015
  ident: 10.1016/j.neuron.2022.12.009_bib12
  article-title: Extracellular ATP enhances radiation-induced brain injury through microglial activation and paracrine signaling via P2X7 receptor
  publication-title: Brain Behav. Immun.
  doi: 10.1016/j.bbi.2015.06.020
  contributor:
    fullname: Xu
– volume: 10
  start-page: 1544
  year: 2007
  ident: 10.1016/j.neuron.2022.12.009_bib56
  article-title: Microglia in the adult brain arise from Ly-6ChiCCR2+ monocytes only under defined host conditions
  publication-title: Nat. Neurosci.
  doi: 10.1038/nn2015
  contributor:
    fullname: Mildner
– volume: 66
  start-page: 1
  year: 2014
  ident: 10.1016/j.neuron.2022.12.009_bib41
  article-title: International union of basic and Clinical Pharmacology. LXXXIX. Update on the extended family of chemokine receptors and introducing a new nomenclature for atypical chemokine receptors
  publication-title: Pharmacol. Rev.
  doi: 10.1124/pr.113.007724
  contributor:
    fullname: Bachelerie
– volume: 25
  start-page: 316
  year: 2012
  ident: 10.1016/j.neuron.2022.12.009_bib47
  article-title: CD8-mediated inflammatory central nervous system disorders
  publication-title: Curr. Opin. Neurol.
  doi: 10.1097/WCO.0b013e328352ea8b
  contributor:
    fullname: Willing
– volume: 578
  start-page: 593
  year: 2020
  ident: 10.1016/j.neuron.2022.12.009_bib23
  article-title: MAFG-driven astrocytes promote CNS inflammation
  publication-title: Nature
  doi: 10.1038/s41586-020-1999-0
  contributor:
    fullname: Wheeler
– volume: 55
  start-page: 50
  year: 2015
  ident: 10.1016/j.neuron.2022.12.009_bib10
  article-title: Pathophysiology, diagnosis, and treatment of radiation necrosis in the brain
  publication-title: Neurol. Med. Chir. (Tokyo)
  doi: 10.2176/nmc.ra.2014-0188
  contributor:
    fullname: Miyatake
– volume: 9
  start-page: 671
  year: 2012
  ident: 10.1016/j.neuron.2022.12.009_bib95
  article-title: NIH Image to ImageJ: 25 years of image analysis
  publication-title: Nat. Methods
  doi: 10.1038/nmeth.2089
  contributor:
    fullname: Schneider
– volume: 31
  start-page: 2989
  year: 2015
  ident: 10.1016/j.neuron.2022.12.009_bib38
  article-title: Diffusion maps for high-dimensional single-cell analysis of differentiation data
  publication-title: Bioinformatics
  doi: 10.1093/bioinformatics/btv325
  contributor:
    fullname: Haghverdi
– volume: 577
  start-page: 399
  year: 2020
  ident: 10.1016/j.neuron.2022.12.009_bib26
  article-title: Clonally expanded CD8 T cells patrol the cerebrospinal fluid in Alzheimer's disease
  publication-title: Nature
  doi: 10.1038/s41586-019-1895-7
  contributor:
    fullname: Gate
– volume: 20
  start-page: 1300
  year: 2017
  ident: 10.1016/j.neuron.2022.12.009_bib25
  article-title: High-dimensional, single-cell characterization of the brain's immune compartment
  publication-title: Nat. Neurosci.
  doi: 10.1038/nn.4610
  contributor:
    fullname: Korin
– volume: 23
  start-page: 869
  year: 2001
  ident: 10.1016/j.neuron.2022.12.009_bib14
  article-title: Radiation-induced apoptosis of oligodendrocytes in the adult rat brain
  publication-title: Neurol. Res.
  doi: 10.1179/016164101101199324
  contributor:
    fullname: Kurita
– volume: 21
  start-page: 457
  year: 2006
  ident: 10.1016/j.neuron.2022.12.009_bib13
  article-title: Ionizing radiation induces astrocyte gliosis through microglia activation
  publication-title: Neurobiol. Dis.
  doi: 10.1016/j.nbd.2005.08.006
  contributor:
    fullname: Hwang
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Snippet The crosstalk between the nervous and immune systems has gained increasing attention for its emerging role in neurological diseases. Radiation-induced brain...
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SubjectTerms Animals
Brain - metabolism
Brain Injuries - pathology
CD8+ T cell
CD8-Positive T-Lymphocytes - metabolism
chemoattraction
Chemokine CCL2 - metabolism
ischemic stroke
Mice
Mice, Inbred C57BL
microglia
Microglia - physiology
radiation-induced brain injury
Title Microglia drive transient insult-induced brain injury by chemotactic recruitment of CD8+ T lymphocytes
URI https://dx.doi.org/10.1016/j.neuron.2022.12.009
https://www.ncbi.nlm.nih.gov/pubmed/36603584
https://search.proquest.com/docview/2761973400
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