Preliminary genetic linkage map of the abalone Haliotis diversicolor Reeve

Haliotis diversicolor Reeve is one of the most important mollusks cultured in South China. Preliminary genetic linkage maps were constructed with amplified fragment length polymorphism （AFLP） markers. A total of 2 596 AFLP markers were obtained from 28 primer combinations in two parents and 78 offsp...

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Published in	Chinese journal of oceanology and limnology Vol. 28; no. 3; pp. 549 - 557
Main Author	石耀华郭希明顾志峰王爱民王嫣
Format	Journal Article
Language	English
Published	Heidelberg SP Science Press 01.05.2010 Springer Nature B.V
Subjects	abalone AFLP标记 Amplified fragment length polymorphism Biology chi-square distribution China chromosome mapping DNA sequences Earth and Environmental Science Earth Sciences Females Gender differences Gene mapping Genetic markers genome Genomes Genomics Haliotis Haliotis diversicolor Linkage analysis linkage groups Males Marine molluscs Mollusks Oceanography parents Polymorphism Population genetics 九孔鲍平均长度扩增片段长度多态性软体动物连锁分析连锁群遗传连锁图谱 China China, People's Rep amplification fragment length polymorphism (AFLP) genetic linkage map Reeve
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ISSN	0254-4059 2096-5508 1993-5005 2523-3521
DOI	10.1007/s00343-010-9026-1

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Abstract	Haliotis diversicolor Reeve is one of the most important mollusks cultured in South China. Preliminary genetic linkage maps were constructed with amplified fragment length polymorphism （AFLP） markers. A total of 2 596 AFLP markers were obtained from 28 primer combinations in two parents and 78 offsprings. Among them, 412 markers （15.9%） were polymorphic and segregated in the mapping family. Chi-square tests showed that 151 （84.4%） markers segregated according to the expected 1：1 Mendelian ratio （P〈0.05） in the female parent, and 200 （85.8%） in the male parent. For the female map, 179 markers were used for linkage analysis and 90 markers were assigned to 17 linkage groups with an average interval length of 25.7 cm. For the male map, 233 markers were used and 94 were mapped into 18 linkage groups, with an average interval of 25.0 cm. The estimated genome length was 2 773.0 cm for the female and 2 817.1 cm for the male map. The observed length of the linkage map was 1 875.2 cm and 1 896.5 cm for the female and male maps, respectively. When doublets were considered, the map length increased to 2 152.8 cm for the female and 2 032.7 cm for the male map, corresponding to genome coverage of 77.6% and 72.2%, respectively.
AbstractList	Haliotis diversicolor Reeve is one of the most important mollusks cultured in South China. Preliminary genetic linkage maps were constructed with amplified fragment length polymorphism （AFLP） markers. A total of 2 596 AFLP markers were obtained from 28 primer combinations in two parents and 78 offsprings. Among them, 412 markers （15.9%） were polymorphic and segregated in the mapping family. Chi-square tests showed that 151 （84.4%） markers segregated according to the expected 1：1 Mendelian ratio （P〈0.05） in the female parent, and 200 （85.8%） in the male parent. For the female map, 179 markers were used for linkage analysis and 90 markers were assigned to 17 linkage groups with an average interval length of 25.7 cm. For the male map, 233 markers were used and 94 were mapped into 18 linkage groups, with an average interval of 25.0 cm. The estimated genome length was 2 773.0 cm for the female and 2 817.1 cm for the male map. The observed length of the linkage map was 1 875.2 cm and 1 896.5 cm for the female and male maps, respectively. When doublets were considered, the map length increased to 2 152.8 cm for the female and 2 032.7 cm for the male map, corresponding to genome coverage of 77.6% and 72.2%, respectively. Haliotis diversicolor Reeve is one of the most important mollusks cultured in South China. Preliminary genetic linkage maps were constructed with amplified fragment length polymorphism (AFLP) markers. A total of 2 596 AFLP markers were obtained from 28 primer combinations in two parents and 78 offsprings. Among them, 412 markers (15.9%) were polymorphic and segregated in the mapping family. Chi-square tests showed that 151 (84.4%) markers segregated according to the expected 1:1 Mendelian ratio (P<0.05) in the female parent, and 200 (85.8%) in the male parent. For the female map, 179 markers were used for linkage analysis and 90 markers were assigned to 17 linkage groups with an average interval length of 25.7 cm. For the male map, 233 markers were used and 94 were mapped into 18 linkage groups, with an average interval of 25.0 cm. The estimated genome length was 2 773.0 cm for the female and 2 817.1 cm for the male map. The observed length of the linkage map was 1 875.2 cm and 1 896.5 cm for the female and male maps, respectively. When doublets were considered, the map length increased to 2 152.8 cm for the female and 2 032.7 cm for the male map, corresponding to genome coverage of 77.6% and 72.2%, respectively. Haliotis diversicolor Reeve is one of the most important mollusks cultured in South China. Preliminary genetic linkage maps were constructed with amplified fragment length polymorphism (AFLP) markers. A total of 2 596 AFLP markers were obtained from 28 primer combinations in two parents and 78 offsprings. Among them, 412 markers (15.9%) were polymorphic and segregated in the mapping family. Chi-square tests showed that 151 (84.4%) markers segregated according to the expected 1:1 Mendelian ratio ( P <0.05) in the female parent, and 200 (85.8%) in the male parent. For the female map, 179 markers were used for linkage analysis and 90 markers were assigned to 17 linkage groups with an average interval length of 25.7 cm. For the male map, 233 markers were used and 94 were mapped into 18 linkage groups, with an average interval of 25.0 cm. The estimated genome length was 2 773.0 cm for the female and 2 817.1 cm for the male map. The observed length of the linkage map was 1 875.2 cm and 1 896.5 cm for the female and male maps, respectively. When doublets were considered, the map length increased to 2 152.8 cm for the female and 2 032.7 cm for the male map, corresponding to genome coverage of 77.6% and 72.2%, respectively.
Author	石耀华郭希明顾志峰王爱民王嫣
AuthorAffiliation	Ocean College, Hainan University, Key Laboratory of Tropic Biological Resources, MOE, Hainan Key Laboratory of Tropical Hydrobiological Technology, Haikou 570228, China Haskin Shellfish Research Laboratory, Institute of Marine and Coastal Sciences, Rutgers University, 6959 Miller Avenue, Port Norris. NJ 08349. USA
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Snippet	Haliotis diversicolor Reeve is one of the most important mollusks cultured in South China. Preliminary genetic linkage maps were constructed with amplified... Haliotis diversicolor Reeve is one of the most important mollusks cultured in South China. Preliminary genetic linkage maps were constructed with amplified...
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SubjectTerms	abalone AFLP标记 Amplified fragment length polymorphism Biology chi-square distribution China chromosome mapping DNA sequences Earth and Environmental Science Earth Sciences Females Gender differences Gene mapping Genetic markers genome Genomes Genomics Haliotis Haliotis diversicolor Linkage analysis linkage groups Males Marine molluscs Mollusks Oceanography parents Polymorphism Population genetics 九孔鲍平均长度扩增片段长度多态性软体动物连锁分析连锁群遗传连锁图谱
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Title	Preliminary genetic linkage map of the abalone Haliotis diversicolor Reeve
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