Microbial ecology of sulfur cycling near the sulfate–methane transition of deep‐sea cold seep sediments

Summary Microbial sulfate reduction is largely associated with anaerobic methane oxidation and alkane degradation in sulfate–methane transition zone (SMTZ) of deep‐sea cold seeps. How the sulfur cycling is mediated by microbes near SMTZ has not been fully understood. In this study, we detected a sha...

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Published inEnvironmental microbiology Vol. 23; no. 11; pp. 6844 - 6858
Main Authors Li, Wen‐Li, Dong, Xiyang, Lu, Rui, Zhou, Ying‐Li, Zheng, Peng‐Fei, Feng, Dong, Wang, Yong
Format Journal Article
LanguageEnglish
Published Hoboken, USA John Wiley & Sons, Inc 01.11.2021
Wiley Subscription Services, Inc
Subjects
Alkanes
alpha-Proteobacteria
Anaerobic microorganisms
Bacteria
Biodegradation
carbon
Carbon cycle
Carbon dioxide
Carbon dioxide fixation
Carbon fixation
cold
Cores
Cycles
gamma-Proteobacteria
genome
Genomes
Geologic Sediments - microbiology
lifestyle
Metabolism
metagenomics
Methane
Methane - metabolism
microbial ecology
Microbiological strains
Microorganisms
Nitrogen
Nitrogen fixation
Nitrogen oxides
Nitrogenation
Oxidation
Oxidation-Reduction
oxygen
Photochemicals
Phylogeny
Population studies
RNA, Ribosomal, 16S - genetics
RNA, Ribosomal, 16S - metabolism
Sediment
Sediments
Seepages
South China Sea
Sulfate reduction
Sulfates
Sulfates - metabolism
sulfides
Sulfur
Sulfur - metabolism
Sulphate reduction
Sulphides
Sulphur
thiosulfates
Transition zone
South China Sea
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Abstract Summary Microbial sulfate reduction is largely associated with anaerobic methane oxidation and alkane degradation in sulfate–methane transition zone (SMTZ) of deep‐sea cold seeps. How the sulfur cycling is mediated by microbes near SMTZ has not been fully understood. In this study, we detected a shallow SMTZ in three of eight sediment cores sampled from two cold seep areas in the South China Sea. One hundred ten genomes representing sulfur‐oxidizing bacteria (SOB) and sulfur‐reducing bacteria (SRB) strains were identified from three SMTZ‐bearing cores. In the layers above SMTZ, SOB were mostly constituted by Campylobacterota, Gammaproteobacteria and Alphaproteobacteria that probably depended on nitrogen oxides and/or oxygen for oxidation of sulfide and thiosulfate in near‐surface sediment layers. In the layers below the SMTZ, the deltaproteobacterial SRB genomes and metatranscriptomes revealed CO2 fixation by Wood–Ljungdahl pathway, sulfate reduction and nitrogen fixation for syntrophic or fermentative lifestyle. A total of 68% of the metagenome assembled genomes were not adjacent to known species in a phylogenomic tree, indicating a high diversity of bacteria involved in sulfur cycling. With the large number of genomes for SOB and SRB, our study uncovers the microbial populations that potentially mediate sulfur metabolism and associated carbon and nitrogen cycles, which sheds light on complex biogeochemical processes in deep‐sea environments.
AbstractList Microbial sulfate reduction is largely associated with anaerobic methane oxidation and alkane degradation in sulfate-methane transition zone (SMTZ) of deep-sea cold seeps. How the sulfur cycling is mediated by microbes near SMTZ has not been fully understood. In this study, we detected a shallow SMTZ in three of eight sediment cores sampled from two cold seep areas in the South China Sea. One hundred ten genomes representing sulfur-oxidizing bacteria (SOB) and sulfur-reducing bacteria (SRB) strains were identified from three SMTZ-bearing cores. In the layers above SMTZ, SOB were mostly constituted by Campylobacterota, Gammaproteobacteria and Alphaproteobacteria that probably depended on nitrogen oxides and/or oxygen for oxidation of sulfide and thiosulfate in near-surface sediment layers. In the layers below the SMTZ, the deltaproteobacterial SRB genomes and metatranscriptomes revealed CO2 fixation by Wood-Ljungdahl pathway, sulfate reduction and nitrogen fixation for syntrophic or fermentative lifestyle. A total of 68% of the metagenome assembled genomes were not adjacent to known species in a phylogenomic tree, indicating a high diversity of bacteria involved in sulfur cycling. With the large number of genomes for SOB and SRB, our study uncovers the microbial populations that potentially mediate sulfur metabolism and associated carbon and nitrogen cycles, which sheds light on complex biogeochemical processes in deep-sea environments.Microbial sulfate reduction is largely associated with anaerobic methane oxidation and alkane degradation in sulfate-methane transition zone (SMTZ) of deep-sea cold seeps. How the sulfur cycling is mediated by microbes near SMTZ has not been fully understood. In this study, we detected a shallow SMTZ in three of eight sediment cores sampled from two cold seep areas in the South China Sea. One hundred ten genomes representing sulfur-oxidizing bacteria (SOB) and sulfur-reducing bacteria (SRB) strains were identified from three SMTZ-bearing cores. In the layers above SMTZ, SOB were mostly constituted by Campylobacterota, Gammaproteobacteria and Alphaproteobacteria that probably depended on nitrogen oxides and/or oxygen for oxidation of sulfide and thiosulfate in near-surface sediment layers. In the layers below the SMTZ, the deltaproteobacterial SRB genomes and metatranscriptomes revealed CO2 fixation by Wood-Ljungdahl pathway, sulfate reduction and nitrogen fixation for syntrophic or fermentative lifestyle. A total of 68% of the metagenome assembled genomes were not adjacent to known species in a phylogenomic tree, indicating a high diversity of bacteria involved in sulfur cycling. With the large number of genomes for SOB and SRB, our study uncovers the microbial populations that potentially mediate sulfur metabolism and associated carbon and nitrogen cycles, which sheds light on complex biogeochemical processes in deep-sea environments.
Microbial sulfate reduction is largely associated with anaerobic methane oxidation and alkane degradation in sulfate–methane transition zone (SMTZ) of deep‐sea cold seeps. How the sulfur cycling is mediated by microbes near SMTZ has not been fully understood. In this study, we detected a shallow SMTZ in three of eight sediment cores sampled from two cold seep areas in the South China Sea. One hundred ten genomes representing sulfur‐oxidizing bacteria (SOB) and sulfur‐reducing bacteria (SRB) strains were identified from three SMTZ‐bearing cores. In the layers above SMTZ, SOB were mostly constituted by Campylobacterota, Gammaproteobacteria and Alphaproteobacteria that probably depended on nitrogen oxides and/or oxygen for oxidation of sulfide and thiosulfate in near‐surface sediment layers. In the layers below the SMTZ, the deltaproteobacterial SRB genomes and metatranscriptomes revealed CO2 fixation by Wood–Ljungdahl pathway, sulfate reduction and nitrogen fixation for syntrophic or fermentative lifestyle. A total of 68% of the metagenome assembled genomes were not adjacent to known species in a phylogenomic tree, indicating a high diversity of bacteria involved in sulfur cycling. With the large number of genomes for SOB and SRB, our study uncovers the microbial populations that potentially mediate sulfur metabolism and associated carbon and nitrogen cycles, which sheds light on complex biogeochemical processes in deep‐sea environments.
Microbial sulfate reduction is largely associated with anaerobic methane oxidation and alkane degradation in sulfate–methane transition zone (SMTZ) of deep‐sea cold seeps. How the sulfur cycling is mediated by microbes near SMTZ has not been fully understood. In this study, we detected a shallow SMTZ in three of eight sediment cores sampled from two cold seep areas in the South China Sea. One hundred ten genomes representing sulfur‐oxidizing bacteria (SOB) and sulfur‐reducing bacteria (SRB) strains were identified from three SMTZ‐bearing cores. In the layers above SMTZ, SOB were mostly constituted by Campylobacterota, Gammaproteobacteria and Alphaproteobacteria that probably depended on nitrogen oxides and/or oxygen for oxidation of sulfide and thiosulfate in near‐surface sediment layers. In the layers below the SMTZ, the deltaproteobacterial SRB genomes and metatranscriptomes revealed CO₂ fixation by Wood–Ljungdahl pathway, sulfate reduction and nitrogen fixation for syntrophic or fermentative lifestyle. A total of 68% of the metagenome assembled genomes were not adjacent to known species in a phylogenomic tree, indicating a high diversity of bacteria involved in sulfur cycling. With the large number of genomes for SOB and SRB, our study uncovers the microbial populations that potentially mediate sulfur metabolism and associated carbon and nitrogen cycles, which sheds light on complex biogeochemical processes in deep‐sea environments.
Summary Microbial sulfate reduction is largely associated with anaerobic methane oxidation and alkane degradation in sulfate–methane transition zone (SMTZ) of deep‐sea cold seeps. How the sulfur cycling is mediated by microbes near SMTZ has not been fully understood. In this study, we detected a shallow SMTZ in three of eight sediment cores sampled from two cold seep areas in the South China Sea. One hundred ten genomes representing sulfur‐oxidizing bacteria (SOB) and sulfur‐reducing bacteria (SRB) strains were identified from three SMTZ‐bearing cores. In the layers above SMTZ, SOB were mostly constituted by Campylobacterota, Gammaproteobacteria and Alphaproteobacteria that probably depended on nitrogen oxides and/or oxygen for oxidation of sulfide and thiosulfate in near‐surface sediment layers. In the layers below the SMTZ, the deltaproteobacterial SRB genomes and metatranscriptomes revealed CO2 fixation by Wood–Ljungdahl pathway, sulfate reduction and nitrogen fixation for syntrophic or fermentative lifestyle. A total of 68% of the metagenome assembled genomes were not adjacent to known species in a phylogenomic tree, indicating a high diversity of bacteria involved in sulfur cycling. With the large number of genomes for SOB and SRB, our study uncovers the microbial populations that potentially mediate sulfur metabolism and associated carbon and nitrogen cycles, which sheds light on complex biogeochemical processes in deep‐sea environments.
Microbial sulfate reduction is largely associated with anaerobic methane oxidation and alkane degradation in sulfate-methane transition zone (SMTZ) of deep-sea cold seeps. How the sulfur cycling is mediated by microbes near SMTZ has not been fully understood. In this study, we detected a shallow SMTZ in three of eight sediment cores sampled from two cold seep areas in the South China Sea. One hundred ten genomes representing sulfur-oxidizing bacteria (SOB) and sulfur-reducing bacteria (SRB) strains were identified from three SMTZ-bearing cores. In the layers above SMTZ, SOB were mostly constituted by Campylobacterota, Gammaproteobacteria and Alphaproteobacteria that probably depended on nitrogen oxides and/or oxygen for oxidation of sulfide and thiosulfate in near-surface sediment layers. In the layers below the SMTZ, the deltaproteobacterial SRB genomes and metatranscriptomes revealed CO fixation by Wood-Ljungdahl pathway, sulfate reduction and nitrogen fixation for syntrophic or fermentative lifestyle. A total of 68% of the metagenome assembled genomes were not adjacent to known species in a phylogenomic tree, indicating a high diversity of bacteria involved in sulfur cycling. With the large number of genomes for SOB and SRB, our study uncovers the microbial populations that potentially mediate sulfur metabolism and associated carbon and nitrogen cycles, which sheds light on complex biogeochemical processes in deep-sea environments.
Microbial sulfate reduction is largely associated with anaerobic methane oxidation and alkane degradation in sulfate–methane transition zone (SMTZ) of deep‐sea cold seeps. How the sulfur cycling is mediated by microbes near SMTZ has not been fully understood. In this study, we detected a shallow SMTZ in three of eight sediment cores sampled from two cold seep areas in the South China Sea. One hundred ten genomes representing sulfur‐oxidizing bacteria (SOB) and sulfur‐reducing bacteria (SRB) strains were identified from three SMTZ‐bearing cores. In the layers above SMTZ, SOB were mostly constituted by Campylobacterota, Gammaproteobacteria and Alphaproteobacteria that probably depended on nitrogen oxides and/or oxygen for oxidation of sulfide and thiosulfate in near‐surface sediment layers. In the layers below the SMTZ, the deltaproteobacterial SRB genomes and metatranscriptomes revealed CO 2 fixation by Wood–Ljungdahl pathway, sulfate reduction and nitrogen fixation for syntrophic or fermentative lifestyle. A total of 68% of the metagenome assembled genomes were not adjacent to known species in a phylogenomic tree, indicating a high diversity of bacteria involved in sulfur cycling. With the large number of genomes for SOB and SRB, our study uncovers the microbial populations that potentially mediate sulfur metabolism and associated carbon and nitrogen cycles, which sheds light on complex biogeochemical processes in deep‐sea environments.
Author Feng, Dong
Zheng, Peng‐Fei
Lu, Rui
Li, Wen‐Li
Zhou, Ying‐Li
Dong, Xiyang
Wang, Yong
Author_xml – sequence: 1
  givenname: Wen‐Li
  surname: Li
  fullname: Li, Wen‐Li
  organization: Chinese Academy of Sciences
– sequence: 2
  givenname: Xiyang
  orcidid: 0000-0002-9224-5923
  surname: Dong
  fullname: Dong, Xiyang
  organization: Southern Marine Science and Engineering Guangdong Laboratory (Zhuhai)
– sequence: 3
  givenname: Rui
  surname: Lu
  fullname: Lu, Rui
  organization: University of Chinese Academy of Sciences
– sequence: 4
  givenname: Ying‐Li
  surname: Zhou
  fullname: Zhou, Ying‐Li
  organization: University of Chinese Academy of Sciences
– sequence: 5
  givenname: Peng‐Fei
  surname: Zheng
  fullname: Zheng, Peng‐Fei
  organization: Chinese Academy of Sciences
– sequence: 6
  givenname: Dong
  surname: Feng
  fullname: Feng, Dong
  organization: Shanghai Ocean University
– sequence: 7
  givenname: Yong
  orcidid: 0000-0003-3595-3867
  surname: Wang
  fullname: Wang, Yong
  email: wangy@idsse.ac.cn
  organization: Chinese Academy of Sciences
BackLink https://www.ncbi.nlm.nih.gov/pubmed/34622529$$D View this record in MEDLINE/PubMed
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Cites_doi 10.1038/nmeth.4197
10.1093/bioinformatics/btv033
10.1093/bioinformatics/btp161
10.1093/nar/gkx295
10.1039/C3CS60249D
10.1371/journal.pone.0052249
10.1093/molbev/msu300
10.1128/AEM.00523-19
10.1016/S0022-2836(05)80360-2
10.1029/2018GC007496
10.1093/bioinformatics/btq041
10.1093/bioinformatics/btz859
10.3389/fmicb.2021.698286
10.1038/ismej.2012.159
10.1038/s41598-020-62840-z
10.1093/bioinformatics/bts611
10.1093/bioinformatics/bty560
10.1038/s41467-020-19648-2
10.1111/j.1462-2920.2012.02885.x
10.1038/s41396-019-0508-7
10.1146/annurev.micro.61.080706.093130
10.1038/35036572
10.1038/s41467-019-09747-0
10.1002/0471250953.bi1007s36
10.1107/S2053230X18015844
10.1016/j.dsr2.2015.02.003
10.1007/s002039900118
10.1016/j.jseaes.2018.09.021
10.1007/s12257-015-0009-0
10.3389/fmicb.2020.02064
10.1038/ngeo1926
10.1111/j.1472-4669.2011.00281.x
10.7717/peerj.7359
10.1016/S0021-9258(19)67945-7
10.1038/s41396-020-0655-x
10.1038/s41587-020-0501-8
10.1016/j.biotechadv.2015.02.007
10.7717/peerj.2584
10.1089/cmb.2013.0084
10.1093/bioinformatics/btv638
10.1038/s41396-021-00932-y
10.1101/gr.186072.114
10.1111/j.1462-2920.2010.02275.x
10.1038/nmeth.3103
10.1007/s42995-020-00057-9
10.1128/JB.181.20.6516-6523.1999
10.3389/fcimb.2017.00321
10.1038/srep40371
10.1073/pnas.1421865112
10.1111/j.1462-2920.2012.02832.x
10.1111/j.1574-6941.2001.tb00798.x
10.1016/j.ymeth.2016.02.020
10.1126/science.aad7154
10.5194/bg-13-4065-2016
10.1371/journal.pone.0030619
10.4056/sigs.2996379
10.1073/pnas.1613308113
10.1038/s41598-019-46209-5
10.1186/s12864-016-3236-7
10.1038/ismej.2011.139
10.1093/molbev/msx148
10.3389/fmicb.2011.00103
10.1038/ismej.2010.134
10.1007/s00792-018-1012-0
10.1093/bioinformatics/btz848
10.1128/mBio.02099-18
10.1038/s41467-020-17860-8
10.1039/C5AY02550H
10.3389/fmicb.2013.00185
10.1073/pnas.231589498
10.3389/fmicb.2020.01932
10.1016/j.mib.2005.04.005
10.1016/j.marpolbul.2021.112126
10.4056/sigs.1243258
10.1186/s40168-018-0541-1
10.1093/bioinformatics/bts429
10.1130/0091-7613(1996)024<0655:MPWSPI>2.3.CO;2
10.1186/s40168-020-00851-8
10.3389/fmicb.2020.01409
10.1099/ijs.0.64823-0
10.1038/s41561-018-0198-1
10.1038/ismej.2014.208
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References 2010; 12
2017; 7
2017; 8
2013; 4
1960; 235
2019; 10
2018; 168
2015; 31
2013; 20
2015; 33
2017; 45
2015; 32
2016; 102
2016; 32
2000; 173
2020; 14
2020; 11
2021; 165
2020; 10
2013; 7
2012; 14
2013; 6
2000; 407
2020; 8
2013; 18
2018; 6
2018; 9
1990; 215
2013; 15
2010; 26
2020b; 2
2017; 34
1999; 181
2016; 113
2018; 74
2012; 28
2018; 34
2010; 3
1996; 24
2016; 351
2014; 11
2001; 98
2019; 7
2009; 25
2019; 9
2009; 63
2011; 2
2011
2015; 122
2019; 36
2020; 38
2020; 36
2016; 17
2015; 9
2018; 22
2011; 5
2007; 57
2016; 13
2014; 43
2011; 9
2016; 4
2018; 19
2020a; 11
2021; 15
2015; 25
2019; 85
2017; 14
2021
2015; 20
2005; 8
2015; 112
2012; 6
2018; 11
2012; 7
2001; 35
2016; 8
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e_1_2_8_68_1
e_1_2_8_3_1
e_1_2_8_81_1
e_1_2_8_5_1
e_1_2_8_7_1
e_1_2_8_9_1
e_1_2_8_20_1
e_1_2_8_43_1
e_1_2_8_66_1
e_1_2_8_22_1
e_1_2_8_45_1
e_1_2_8_64_1
e_1_2_8_62_1
e_1_2_8_85_1
e_1_2_8_41_1
e_1_2_8_60_1
e_1_2_8_83_1
e_1_2_8_17_1
e_1_2_8_19_1
e_1_2_8_13_1
e_1_2_8_36_1
e_1_2_8_59_1
e_1_2_8_15_1
e_1_2_8_38_1
e_1_2_8_57_1
e_1_2_8_70_1
Skennerton C.T. (e_1_2_8_73_1) 2017; 8
e_1_2_8_32_1
e_1_2_8_55_1
e_1_2_8_78_1
e_1_2_8_11_1
e_1_2_8_34_1
e_1_2_8_53_1
e_1_2_8_76_1
e_1_2_8_51_1
e_1_2_8_74_1
e_1_2_8_30_1
e_1_2_8_72_1
e_1_2_8_29_1
e_1_2_8_25_1
e_1_2_8_46_1
e_1_2_8_27_1
e_1_2_8_48_1
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e_1_2_8_2_1
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e_1_2_8_8_1
e_1_2_8_21_1
e_1_2_8_42_1
e_1_2_8_67_1
e_1_2_8_23_1
e_1_2_8_44_1
e_1_2_8_65_1
Li X. (e_1_2_8_52_1) 2013; 18
e_1_2_8_63_1
e_1_2_8_84_1
e_1_2_8_40_1
e_1_2_8_61_1
e_1_2_8_82_1
e_1_2_8_18_1
e_1_2_8_39_1
e_1_2_8_14_1
e_1_2_8_35_1
e_1_2_8_16_1
e_1_2_8_37_1
e_1_2_8_58_1
e_1_2_8_79_1
e_1_2_8_10_1
e_1_2_8_31_1
e_1_2_8_56_1
e_1_2_8_77_1
e_1_2_8_12_1
e_1_2_8_33_1
e_1_2_8_54_1
e_1_2_8_75_1
e_1_2_8_50_1
e_1_2_8_71_1
References_xml – volume: 112
  start-page: 4015
  year: 2015
  end-page: 4020
  article-title: Global dispersion and local diversification of the methane seep microbiome
  publication-title: Proc Natl Acad Sci U S A
– volume: 34
  start-page: i884
  year: 2018
  end-page: i890
  article-title: fastp: an ultra‐fast all‐in‐one FASTQ preprocessor
  publication-title: Bioinformatics
– volume: 165
  start-page: 112126
  year: 2021
  article-title: Influence of environmental factors on benthic nitrogen fixation and role of sulfur reducing diazotrophs in a eutrophic tropical estuary
  publication-title: Mar Pollut Bull
– volume: 122
  start-page: 74
  year: 2015
  end-page: 83
  article-title: Authigenic carbonates from an active cold seep of the northern South China Sea: new insights into fluid sources and past seepage activity
  publication-title: Deep Sea Res II
– volume: 38
  start-page: 1079
  year: 2020
  end-page: 1086
  article-title: A complete domain‐to‐species taxonomy for bacteria and archaea
  publication-title: Nat Biotechnol
– volume: 45
  start-page: W180
  year: 2017
  end-page: W188
  article-title: MicrobiomeAnalyst: a web‐based tool for comprehensive statistical, visual and meta‐analysis of microbiome data
  publication-title: Nucleic Acids Res
– volume: 11
  start-page: 2064
  year: 2020
  article-title: Desulfatiglans anilini initiates degradation of aniline with the production of phenylphosphoamidate and 4‐aminobenzoate as intermediates through synthases and carboxylases from different gene clusters
  publication-title: Front Microbiol
– volume: 19
  start-page: 2049
  year: 2018
  end-page: 2061
  article-title: In situ raman quantitative detection of the cold seep vents and fluids in the chemosynthetic communities in the South China Sea
  publication-title: Geochem Geophys Geosys
– volume: 6
  start-page: 610
  year: 2012
  end-page: 618
  article-title: An improved Greengenes taxonomy with explicit ranks for ecological and evolutionary analyses of bacteria and archaea
  publication-title: ISME J
– year: 2021
– volume: 24
  start-page: 655
  year: 1996
  end-page: 658
  article-title: Marine pore‐water sulfate profiles indicate in situ methane flux from underlying gas hydrate
  publication-title: Geology
– volume: 9
  start-page: e02099
  year: 2018
  end-page: e02018
  article-title: Identifying and predicting novelty in microbiome studies
  publication-title: mBio
– volume: 28
  start-page: 2223
  year: 2012
  end-page: 2230
  article-title: Gene and translation initiation site prediction in metagenomic sequences
  publication-title: Bioinformatics
– volume: 36
  start-page: 2251
  year: 2020
  end-page: 2252
  article-title: KofamKOALA: KEGG Ortholog assignment based on profile HMM and adaptive score threshold
  publication-title: Bioinformatics
– volume: 17
  start-page: 918
  year: 2016
  article-title: Genome and catabolic subproteomes of the marine, nutritionally versatile, sulfate‐reducing bacterium Desulfococcus multivorans DSM 2059
  publication-title: BMC Genomics
– volume: 14
  start-page: 2689
  year: 2012
  end-page: 2710
  article-title: Distribution and in situ abundance of sulfate‐reducing bacteria in diverse marine hydrocarbon seep sediments
  publication-title: Environ Microbiol
– volume: 13
  start-page: 4065
  year: 2016
  end-page: 4080
  article-title: Nitrogen fixation in sediments along a depth transect through the Peruvian oxygen minimum zone
  publication-title: Biogeosciences
– volume: 28
  start-page: 3211
  year: 2012
  end-page: 3217
  article-title: SortMeRNA: fast and accurate filtering of ribosomal RNAs in metatranscriptomic data
  publication-title: Bioinformatics
– volume: 7
  year: 2019
  article-title: MetaBAT 2: an adaptive binning algorithm for robust and efficient genome reconstruction from metagenome assemblies
  publication-title: PeerJ
– volume: 7
  start-page: 321
  year: 2017
  article-title: Diversity of cervical microbiota in asymptomatic Chlamydia trachomatis genital infection: a pilot study
  publication-title: Front Cell Infect Microbiol
– volume: 102
  start-page: 3
  year: 2016
  end-page: 11
  article-title: MEGAHIT v1.0: a fast and scalable metagenome assembler driven by advanced methodologies and community practices
  publication-title: Methods
– volume: 36
  start-page: 1925
  issue: 6
  year: 2019
  end-page: 1927
  article-title: GTDB‐Tk: a toolkit to classify genomes with the Genome Taxonomy Database
  publication-title: Bioinformatics
– volume: 4
  start-page: 185
  year: 2013
  article-title: Phylogenetic diversity and functional gene patterns of sulfur‐oxidizing subseafloor Epsilonproteobacteria in diffuse hydrothermal vent fluids
  publication-title: Front Microbiol
– volume: 20
  start-page: 714
  year: 2013
  end-page: 737
  article-title: Assembling single‐cell genomes and mini‐metagenomes from chimeric MDA products
  publication-title: J Comput Biol
– volume: 15
  start-page: 2366
  year: 2021
  end-page: 2378
  article-title: Deep sea sediments associated with cold seeps are a subsurface reservoir of viral diversity
  publication-title: ISME J
– volume: 7
  year: 2017
  article-title: Parallel‐META 3: comprehensive taxonomical and functional analysis platform for efficient comparison of microbial communities
  publication-title: Sci Rep
– volume: 4
  year: 2016
  article-title: VSEARCH: a versatile open source tool for metagenomics
  publication-title: PeerJ
– volume: 351
  start-page: 703
  year: 2016
  end-page: 707
  article-title: Artificial electron acceptors decouple archaeal methane oxidation from sulfate reduction
  publication-title: Science
– volume: 22
  start-page: 499
  year: 2018
  end-page: 510
  article-title: The vertical distribution of prokaryotes in the surface sediment of Jiaolong cold seep at the northern South China Sea
  publication-title: Extremophiles
– volume: 32
  start-page: 605
  year: 2016
  end-page: 607
  article-title: MaxBin 2.0: an automated binning algorithm to recover genomes from multiple metagenomic datasets
  publication-title: Bioinformatics
– volume: 8
  start-page: e00530
  year: 2017
  end-page: e00517
  article-title: Methane‐fueled syntrophy through extracellular electron transfer: uncovering the genomic traits conserved within diverse bacterial partners of anaerobic methanotrophic archaea
  publication-title: mBio
– volume: 11
  start-page: 782
  year: 2018
  end-page: 789
  article-title: Rapid transition from continental breakup to igneous oceanic crust in the South China Sea
  publication-title: Nature Geosci
– volume: 215
  start-page: 403
  year: 1990
  end-page: 410
  article-title: Basic local alignment search tool
  publication-title: J Mol Biol
– volume: 2
  start-page: 431
  year: 2020b
  end-page: 441
  article-title: Metabolic diversification of anaerobic methanotrophic archaea in a deep‐sea cold seep
  publication-title: Mar Life Sci Technol
– volume: 113
  start-page: 12815
  year: 2016
  end-page: 12819
  article-title: Expression of multiple cbb3 cytochrome c oxidase isoforms by combinations of multiple isosubunits in Pseudomonas aeruginosa
  publication-title: Proc Natl Acad Sci U S A
– volume: 25
  start-page: 1043
  year: 2015
  end-page: 1055
  article-title: CheckM: assessing the quality of microbial genomes recovered from isolates, single cells, and metagenomes
  publication-title: Genome Res
– volume: 8
  start-page: 102
  year: 2020
  article-title: Microbial succession during the transition from active to inactive stages of deep‐sea hydrothermal vent sulfide chimneys
  publication-title: Microbiome
– volume: 5
  start-page: 565
  year: 2011
  end-page: 567
  article-title: High rates of denitrification and nitrate removal in cold seep sediments
  publication-title: ISME J
– volume: 9
  start-page: 9725
  year: 2019
  article-title: Methane‐fuelled biofilms predominantly composed of methanotrophic ANME‐1 in Arctic gas hydrate‐related sediments
  publication-title: Sci Rep
– volume: 18
  start-page: 344
  year: 2013
  end-page: 354
  article-title: Chinese JIAOLONG's first scientific cruise in 2013
  publication-title: J Ship Mech
– volume: 32
  start-page: 268
  year: 2015
  end-page: 274
  article-title: IQ‐TREE: a fast and effective stochastic algorithm for estimating maximum‐likelihood phylogenies
  publication-title: Mol Biol Evol
– volume: 33
  start-page: 1246
  year: 2015
  end-page: 1259
  article-title: Sulfur‐oxidizing bacteria in environmental technology
  publication-title: Biotechnol Adv
– volume: 98
  start-page: 13408
  year: 2001
  end-page: 13413
  article-title: A paradox resolved: sulfide acquisition by roots of seep tubeworms sustains net chemoautotrophy
  publication-title: Proc Natl Acad Sci U S A
– volume: 25
  start-page: 1338
  year: 2009
  end-page: 1340
  article-title: Identification of ribosomal RNA genes in metagenomic fragments
  publication-title: Bioinformatics
– volume: 7
  year: 2012
  article-title: FastUniq: a fast de novo duplicates removal tool for paired short reads
  publication-title: PLoS One
– volume: 7
  start-page: 91
  year: 2012
  end-page: 106
  article-title: Complete genome sequence of Syntrophobacter fumaroxidans strain (MPOB(T))
  publication-title: Stand Genomic Sci
– volume: 20
  start-page: 643
  year: 2015
  end-page: 651
  article-title: Aerobic denitrification: a review of important advances of the last 30 years
  publication-title: Biotechnol Bioproc E
– volume: 14
  start-page: 104
  year: 2020
  end-page: 122
  article-title: Horizontal acquisition of a patchwork Calvin cycle by symbiotic and free‐living Campylobacterota (formerly Epsilonproteobacteria)
  publication-title: ISME J
– volume: 407
  start-page: 623
  year: 2000
  end-page: 626
  article-title: A marine microbial consortium apparently mediating anaerobic oxidation of methane
  publication-title: Nature
– volume: 10
  start-page: 1816
  year: 2019
  article-title: Metabolic potential of uncultured bacteria and archaea associated with petroleum seepage in deep‐sea sediments
  publication-title: Nat Commun
– volume: 6
  start-page: 158
  year: 2018
  article-title: MetaWRAP‐a flexible pipeline for genome‐resolved metagenomic data analysis
  publication-title: Microbiome
– volume: 7
  year: 2012
  article-title: NGS QC toolkit: a toolkit for quality control of next generation sequencing data
  publication-title: PLoS ONE
– volume: 173
  start-page: 117
  year: 2000
  end-page: 125
  article-title: Characterization of a new type of sulfite dehydrogenase from Paracoccus pantotrophus GB17
  publication-title: Arch Microbiol
– volume: 35
  start-page: 145
  year: 2001
  end-page: 150
  article-title: Molecular characterization of sulfate‐reducing bacteria in anaerobic hydrocarbon‐degrading consortia and pure cultures using the dissimilatory sulfite reductase (dsr AB) genes
  publication-title: FEMS Microbiol Ecol
– volume: 11
  start-page: 3941
  year: 2020
  article-title: Genomic and enzymatic evidence of acetogenesis by anaerobic methanotrophic archaea
  publication-title: Nat Commun
– volume: 2
  start-page: 103
  year: 2011
  article-title: Regulation and function of versatile aerobic and anaerobic respiratory metabolism in Pseudomonas aeruginosa
  publication-title: Front Microbiol
– volume: 8
  start-page: 12
  year: 2016
  end-page: 24
  article-title: Genomics and taxonomy in diagnostics for food security: soft‐rotting enterobacterial plant pathogens
  publication-title: Anal Methods
– volume: 14
  start-page: 417
  year: 2017
  end-page: 419
  article-title: Salmon provides fast and bias‐aware quantification of transcript expression
  publication-title: Nat Methods
– volume: 63
  start-page: 311
  year: 2009
  end-page: 334
  article-title: Anaerobic oxidation of methane: progress with an unknown process
  publication-title: Annu Rev Microbiol
– volume: 26
  start-page: 715
  year: 2010
  end-page: 721
  article-title: Identifying biologically relevant differences between metagenomic communities
  publication-title: Bioinformatics
– volume: 235
  start-page: 825
  year: 1960
  end-page: 831
  article-title: Isolation and properties of two soluble heme proteins in extracts of the photoanaerobe Chromatium
  publication-title: J Biol Chem
– volume: 3
  start-page: 276
  year: 2010
  end-page: 284
  article-title: Complete genome sequence of Desulfarculus baarsii type strain (2st14)
  publication-title: Stand Genomic Sci
– volume: 11
  start-page: 1409
  year: 2020a
  article-title: Niche differentiation of sulfate‐ and iron‐dependent anaerobic methane oxidation and methylotrophic Methanogenesis in Deep Sea methane seeps
  publication-title: Front Microbiol
– year: 2011
  article-title: Using QIIME to analyze 16S rRNA gene sequences from microbial communities
  publication-title: Curr Protoc Bioinfo
– volume: 11
  start-page: 1144
  year: 2014
  end-page: 1146
  article-title: Binning metagenomic contigs by coverage and composition
  publication-title: Nat Methods
– volume: 11
  start-page: 5825
  year: 2020
  article-title: Thermogenic hydrocarbon biodegradation by diverse depth‐stratified microbial populations at a Scotian Basin cold seep
  publication-title: Nat Commun
– volume: 10
  start-page: 5772
  year: 2020
  article-title: Metagenomic views of microbial dynamics influenced by hydrocarbon seepage in sediments of the Gulf of Mexico
  publication-title: Sci Rep
– volume: 11
  start-page: 1932
  year: 2020
  article-title: The impact of methane on microbial communities at marine Arctic gas hydrate bearing sediment
  publication-title: Front Microbiol
– volume: 6
  start-page: 725
  year: 2013
  end-page: 734
  article-title: Seafloor oxygen consumption fuelled by methane from cold seeps
  publication-title: Nat Geosci
– volume: 14
  start-page: 1834
  year: 2020
  end-page: 1846
  article-title: Soil bacterial populations are shaped by recombination and gene‐specific selection across a grassland meadow
  publication-title: ISME J
– volume: 181
  start-page: 6516
  year: 1999
  end-page: 6523
  article-title: Sulfide‐quinone reductase from Rhodobacter capsulatus: requirement for growth, periplasmic localization, and extension of gene sequence analysis
  publication-title: J Bacteriol
– volume: 9
  start-page: 330
  year: 2011
  end-page: 348
  article-title: Niche differentiation among mat‐forming, sulfide‐oxidizing bacteria at cold seeps of the Nile Deep Sea Fan (Eastern Mediterranean Sea)
  publication-title: Geobiology
– volume: 9
  start-page: 1152
  year: 2015
  end-page: 1165
  article-title: Phylogenetic and environmental diversity of DsrAB‐type dissimilatory (bi)sulfite reductases
  publication-title: ISME J
– volume: 57
  start-page: 827
  year: 2007
  end-page: 831
  article-title: Sulfurospirillum cavolei sp nov, a facultatively anaerobic sulfur‐reducing bacterium isolated from an underground crude oil storage cavity
  publication-title: Int J Syst Evol Microbiol
– volume: 43
  start-page: 676
  year: 2014
  end-page: 706
  article-title: Nitrate and periplasmic nitrate reductases
  publication-title: Chem Soc Rev
– volume: 12
  start-page: 2327
  year: 2010
  end-page: 2340
  article-title: Identification of the dominant sulfate‐reducing bacterial partner of anaerobic methanotrophs of the ANME‐2 clade
  publication-title: Environ Microbiol
– volume: 168
  start-page: 3
  year: 2018
  end-page: 16
  article-title: Cold seep systems in the South China Sea: An overview
  publication-title: J Asian Earth Sci
– volume: 7
  start-page: 885
  year: 2013
  end-page: 895
  article-title: Anaerobic degradation of propane and butane by sulfate‐reducing bacteria enriched from marine hydrocarbon cold seeps
  publication-title: ISME J
– volume: 74
  start-page: 781
  year: 2018
  end-page: 786
  article-title: Crystal structure of the dimethylsulfide monooxygenase DmoA from Hyphomicrobium sulfonivorans
  publication-title: Acta Crystallogr F Struct Biol Commun
– volume: 31
  start-page: 1674
  year: 2015
  end-page: 1676
  article-title: MEGAHIT: an ultra‐fast single‐node solution for large and complex metagenomics assembly via succinct de Bruijn graph
  publication-title: Bioinformatics
– volume: 15
  start-page: 1334
  year: 2013
  end-page: 1355
  article-title: Complete genome, catabolic sub‐proteomes and key‐metabolites of Desulfobacula toluolica Tol2, a marine, aromatic compound‐degrading, sulfate‐reducing bacterium
  publication-title: Environ Microbiol
– volume: 34
  start-page: 2115
  year: 2017
  end-page: 2122
  article-title: Fast genome‐wide functional annotation through orthology assignment by eggNOG‐Mapper
  publication-title: Mol Biol Evol
– volume: 85
  start-page: e00523
  year: 2019
  end-page: e00519
  article-title: New microbial lineages capable of carbon fixation and nutrient cycling in deep‐sea sediments of the northern South China Sea
  publication-title: Appl Environ Microbiol
– volume: 8
  start-page: 253
  year: 2005
  end-page: 259
  article-title: Prokaryotic sulfur oxidation
  publication-title: Curr Opin Microbiol
– ident: e_1_2_8_62_1
  doi: 10.1038/nmeth.4197
– ident: e_1_2_8_48_1
  doi: 10.1093/bioinformatics/btv033
– ident: e_1_2_8_34_1
  doi: 10.1093/bioinformatics/btp161
– ident: e_1_2_8_18_1
  doi: 10.1093/nar/gkx295
– ident: e_1_2_8_74_1
  doi: 10.1039/C3CS60249D
– ident: e_1_2_8_82_1
  doi: 10.1371/journal.pone.0052249
– ident: e_1_2_8_56_1
  doi: 10.1093/molbev/msu300
– ident: e_1_2_8_33_1
  doi: 10.1128/AEM.00523-19
– volume: 18
  start-page: 344
  year: 2013
  ident: e_1_2_8_52_1
  article-title: Chinese JIAOLONG's first scientific cruise in 2013
  publication-title: J Ship Mech
– ident: e_1_2_8_4_1
  doi: 10.1016/S0022-2836(05)80360-2
– ident: e_1_2_8_22_1
  doi: 10.1029/2018GC007496
– ident: e_1_2_8_58_1
  doi: 10.1093/bioinformatics/btq041
– ident: e_1_2_8_6_1
  doi: 10.1093/bioinformatics/btz859
– ident: e_1_2_8_83_1
  doi: 10.3389/fmicb.2021.698286
– ident: e_1_2_8_38_1
  doi: 10.1038/ismej.2012.159
– ident: e_1_2_8_85_1
  doi: 10.1038/s41598-020-62840-z
– ident: e_1_2_8_45_1
  doi: 10.1093/bioinformatics/bts611
– ident: e_1_2_8_16_1
  doi: 10.1093/bioinformatics/bty560
– ident: e_1_2_8_20_1
  doi: 10.1038/s41467-020-19648-2
– ident: e_1_2_8_78_1
  doi: 10.1111/j.1462-2920.2012.02885.x
– ident: e_1_2_8_7_1
  doi: 10.1038/s41396-019-0508-7
– ident: e_1_2_8_43_1
  doi: 10.1146/annurev.micro.61.080706.093130
– ident: e_1_2_8_10_1
  doi: 10.1038/35036572
– ident: e_1_2_8_19_1
  doi: 10.1038/s41467-019-09747-0
– ident: e_1_2_8_46_1
  doi: 10.1002/0471250953.bi1007s36
– ident: e_1_2_8_13_1
  doi: 10.1107/S2053230X18015844
– ident: e_1_2_8_23_1
  doi: 10.1016/j.dsr2.2015.02.003
– ident: e_1_2_8_67_1
  doi: 10.1007/s002039900118
– ident: e_1_2_8_24_1
  doi: 10.1016/j.jseaes.2018.09.021
– ident: e_1_2_8_39_1
  doi: 10.1007/s12257-015-0009-0
– ident: e_1_2_8_81_1
  doi: 10.3389/fmicb.2020.02064
– volume: 8
  start-page: e00530
  year: 2017
  ident: e_1_2_8_73_1
  article-title: Methane‐fueled syntrophy through extracellular electron transfer: uncovering the genomic traits conserved within diverse bacterial partners of anaerobic methanotrophic archaea
  publication-title: mBio
– ident: e_1_2_8_9_1
  doi: 10.1038/ngeo1926
– ident: e_1_2_8_30_1
  doi: 10.1111/j.1472-4669.2011.00281.x
– ident: e_1_2_8_41_1
  doi: 10.7717/peerj.7359
– ident: e_1_2_8_8_1
  doi: 10.1016/S0021-9258(19)67945-7
– ident: e_1_2_8_17_1
  doi: 10.1038/s41396-020-0655-x
– ident: e_1_2_8_60_1
  doi: 10.1038/s41587-020-0501-8
– ident: e_1_2_8_65_1
  doi: 10.1016/j.biotechadv.2015.02.007
– ident: e_1_2_8_68_1
  doi: 10.7717/peerj.2584
– ident: e_1_2_8_57_1
  doi: 10.1089/cmb.2013.0084
– ident: e_1_2_8_80_1
  doi: 10.1093/bioinformatics/btv638
– ident: e_1_2_8_53_1
  doi: 10.1038/s41396-021-00932-y
– ident: e_1_2_8_59_1
  doi: 10.1101/gr.186072.114
– ident: e_1_2_8_71_1
  doi: 10.1111/j.1462-2920.2010.02275.x
– ident: e_1_2_8_3_1
  doi: 10.1038/nmeth.3103
– ident: e_1_2_8_51_1
  doi: 10.1007/s42995-020-00057-9
– ident: e_1_2_8_72_1
  doi: 10.1128/JB.181.20.6516-6523.1999
– ident: e_1_2_8_25_1
  doi: 10.3389/fcimb.2017.00321
– ident: e_1_2_8_40_1
  doi: 10.1038/srep40371
– ident: e_1_2_8_69_1
  doi: 10.1073/pnas.1421865112
– ident: e_1_2_8_42_1
  doi: 10.1111/j.1462-2920.2012.02832.x
– ident: e_1_2_8_63_1
  doi: 10.1111/j.1574-6941.2001.tb00798.x
– ident: e_1_2_8_49_1
  doi: 10.1016/j.ymeth.2016.02.020
– ident: e_1_2_8_70_1
  doi: 10.1126/science.aad7154
– ident: e_1_2_8_28_1
  doi: 10.5194/bg-13-4065-2016
– ident: e_1_2_8_61_1
  doi: 10.1371/journal.pone.0030619
– ident: e_1_2_8_64_1
  doi: 10.4056/sigs.2996379
– ident: e_1_2_8_31_1
  doi: 10.1073/pnas.1613308113
– ident: e_1_2_8_29_1
  doi: 10.1038/s41598-019-46209-5
– ident: e_1_2_8_21_1
  doi: 10.1186/s12864-016-3236-7
– ident: e_1_2_8_54_1
  doi: 10.1038/ismej.2011.139
– ident: e_1_2_8_35_1
  doi: 10.1093/molbev/msx148
– ident: e_1_2_8_5_1
  doi: 10.3389/fmicb.2011.00103
– ident: e_1_2_8_12_1
  doi: 10.1038/ismej.2010.134
– ident: e_1_2_8_79_1
  doi: 10.1007/s00792-018-1012-0
– ident: e_1_2_8_15_1
  doi: 10.1093/bioinformatics/btz848
– ident: e_1_2_8_75_1
  doi: 10.1128/mBio.02099-18
– ident: e_1_2_8_84_1
  doi: 10.1038/s41467-020-17860-8
– ident: e_1_2_8_66_1
  doi: 10.1039/C5AY02550H
– ident: e_1_2_8_2_1
  doi: 10.3389/fmicb.2013.00185
– ident: e_1_2_8_26_1
  doi: 10.1073/pnas.231589498
– ident: e_1_2_8_14_1
  doi: 10.3389/fmicb.2020.01932
– ident: e_1_2_8_27_1
  doi: 10.1016/j.mib.2005.04.005
– ident: e_1_2_8_37_1
  doi: 10.1016/j.marpolbul.2021.112126
– ident: e_1_2_8_76_1
  doi: 10.4056/sigs.1243258
– ident: e_1_2_8_77_1
  doi: 10.1186/s40168-018-0541-1
– ident: e_1_2_8_36_1
  doi: 10.1093/bioinformatics/bts429
– ident: e_1_2_8_11_1
  doi: 10.1130/0091-7613(1996)024<0655:MPWSPI>2.3.CO;2
– ident: e_1_2_8_32_1
  doi: 10.1186/s40168-020-00851-8
– ident: e_1_2_8_50_1
  doi: 10.3389/fmicb.2020.01409
– ident: e_1_2_8_44_1
  doi: 10.1099/ijs.0.64823-0
– ident: e_1_2_8_47_1
  doi: 10.1038/s41561-018-0198-1
– ident: e_1_2_8_55_1
  doi: 10.1038/ismej.2014.208
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Snippet Summary Microbial sulfate reduction is largely associated with anaerobic methane oxidation and alkane degradation in sulfate–methane transition zone (SMTZ) of...
Microbial sulfate reduction is largely associated with anaerobic methane oxidation and alkane degradation in sulfate–methane transition zone (SMTZ) of deep‐sea...
Microbial sulfate reduction is largely associated with anaerobic methane oxidation and alkane degradation in sulfate-methane transition zone (SMTZ) of deep-sea...
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SubjectTerms Alkanes
alpha-Proteobacteria
Anaerobic microorganisms
Bacteria
Biodegradation
carbon
Carbon cycle
Carbon dioxide
Carbon dioxide fixation
Carbon fixation
cold
Cores
Cycles
gamma-Proteobacteria
genome
Genomes
Geologic Sediments - microbiology
lifestyle
Metabolism
metagenomics
Methane
Methane - metabolism
microbial ecology
Microbiological strains
Microorganisms
Nitrogen
Nitrogen fixation
Nitrogen oxides
Nitrogenation
Oxidation
Oxidation-Reduction
oxygen
Photochemicals
Phylogeny
Population studies
RNA, Ribosomal, 16S - genetics
RNA, Ribosomal, 16S - metabolism
Sediment
Sediments
Seepages
South China Sea
Sulfate reduction
Sulfates
Sulfates - metabolism
sulfides
Sulfur
Sulfur - metabolism
Sulphate reduction
Sulphides
Sulphur
thiosulfates
Transition zone
Title Microbial ecology of sulfur cycling near the sulfate–methane transition of deep‐sea cold seep sediments
URI https://onlinelibrary.wiley.com/doi/abs/10.1111%2F1462-2920.15796
https://www.ncbi.nlm.nih.gov/pubmed/34622529
https://www.proquest.com/docview/2602467420
https://www.proquest.com/docview/2580697931
https://www.proquest.com/docview/2636449091
Volume 23
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