Temporal progression of anaerobic fungal communities in dairy calves from birth to maturity
Establishment of microbial communities in neonatal calves is vital for their growth and overall health. While this process has received considerable attention for bacteria, our knowledge on temporal progression of anaerobic gut fungi (AGF) in calves is lacking. Here, we examined AGF communities in f...
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| Published in | Environmental microbiology Vol. 25; no. 11; pp. 2088 - 2101 |
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| Main Authors | , , , , , , |
| Format | Journal Article |
| Language | English |
| Published |
Hoboken, USA
John Wiley & Sons, Inc
01.11.2023
Wiley Subscription Services, Inc |
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| Online Access | Get full text |
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| Abstract | Establishment of microbial communities in neonatal calves is vital for their growth and overall health. While this process has received considerable attention for bacteria, our knowledge on temporal progression of anaerobic gut fungi (AGF) in calves is lacking. Here, we examined AGF communities in faecal samples from six dairy cattle collected at 24 different time points during the pre‐weaning (days 1–48), weaning (days 48–60), and post‐weaning (days 60–360) phases. Quantitative polymerase chain reaction indicated that AGF colonisation occurs within 24 h after birth, with loads slowly increasing during pre‐weaning and weaning, then drastically increasing post‐weaning. Culture‐independent amplicon surveys identified higher alpha diversity during pre‐weaning/weaning, compared to post‐weaning. AGF community structure underwent a drastic shift post‐weaning, from a community enriched in genera commonly encountered in hindgut fermenters to one enriched in genera commonly encountered in adult ruminants. Comparison of AGF community between calves day 1 post‐birth and their mothers suggest a major role for maternal transmission, with additional input from cohabitating subjects. This distinct pattern of AGF progression could best be understood in‐light of their narrower niche preferences, metabolic specialisation, and physiological optima compared to bacteria, hence eliciting a unique response to changes in feeding pattern and associated structural GIT development during maturation. |
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| AbstractList | Establishment of microbial communities in neonatal calves is vital for their growth and overall health. While this process has received considerable attention for bacteria, our knowledge on temporal progression of anaerobic gut fungi (AGF) in calves is lacking. Here, we examined AGF communities in faecal samples from six dairy cattle collected at 24 different time points during the pre‐weaning (days 1–48), weaning (days 48–60), and post‐weaning (days 60–360) phases. Quantitative polymerase chain reaction indicated that AGF colonisation occurs within 24 h after birth, with loads slowly increasing during pre‐weaning and weaning, then drastically increasing post‐weaning. Culture‐independent amplicon surveys identified higher alpha diversity during pre‐weaning/weaning, compared to post‐weaning. AGF community structure underwent a drastic shift post‐weaning, from a community enriched in genera commonly encountered in hindgut fermenters to one enriched in genera commonly encountered in adult ruminants
.
Comparison of AGF community between calves day 1 post‐birth and their mothers suggest a major role for maternal transmission, with additional input from cohabitating subjects. This distinct pattern of AGF progression could best be understood in‐light of their narrower niche preferences, metabolic specialisation, and physiological optima compared to bacteria, hence eliciting a unique response to changes in feeding pattern and associated structural GIT development during maturation. Establishment of microbial communities in neonatal calves is vital for their growth and overall health. While this process has received considerable attention for bacteria, our knowledge on temporal progression of anaerobic gut fungi (AGF) in calves is lacking. Here, we examined AGF communities in faecal samples from six dairy cattle collected at 24 different time points during the pre-weaning (days 1-48), weaning (days 48-60), and post-weaning (days 60-360) phases. Quantitative polymerase chain reaction indicated that AGF colonisation occurs within 24 h after birth, with loads slowly increasing during pre-weaning and weaning, then drastically increasing post-weaning. Culture-independent amplicon surveys identified higher alpha diversity during pre-weaning/weaning, compared to post-weaning. AGF community structure underwent a drastic shift post-weaning, from a community enriched in genera commonly encountered in hindgut fermenters to one enriched in genera commonly encountered in adult ruminants. Comparison of AGF community between calves day 1 post-birth and their mothers suggest a major role for maternal transmission, with additional input from cohabitating subjects. This distinct pattern of AGF progression could best be understood in-light of their narrower niche preferences, metabolic specialisation, and physiological optima compared to bacteria, hence eliciting a unique response to changes in feeding pattern and associated structural GIT development during maturation. Establishment of microbial communities in neonatal calves is vital for their growth and overall health. While this process has received considerable attention for bacteria, our knowledge on temporal progression of anaerobic gut fungi (AGF) in calves is lacking. Here, we examined AGF communities in faecal samples from six dairy cattle collected at 24 different time points during the pre-weaning (days 1-48), weaning (days 48-60), and post-weaning (days 60-360) phases. Quantitative polymerase chain reaction indicated that AGF colonisation occurs within 24 h after birth, with loads slowly increasing during pre-weaning and weaning, then drastically increasing post-weaning. Culture-independent amplicon surveys identified higher alpha diversity during pre-weaning/weaning, compared to post-weaning. AGF community structure underwent a drastic shift post-weaning, from a community enriched in genera commonly encountered in hindgut fermenters to one enriched in genera commonly encountered in adult ruminants. Comparison of AGF community between calves day 1 post-birth and their mothers suggest a major role for maternal transmission, with additional input from cohabitating subjects. This distinct pattern of AGF progression could best be understood in-light of their narrower niche preferences, metabolic specialisation, and physiological optima compared to bacteria, hence eliciting a unique response to changes in feeding pattern and associated structural GIT development during maturation.Establishment of microbial communities in neonatal calves is vital for their growth and overall health. While this process has received considerable attention for bacteria, our knowledge on temporal progression of anaerobic gut fungi (AGF) in calves is lacking. Here, we examined AGF communities in faecal samples from six dairy cattle collected at 24 different time points during the pre-weaning (days 1-48), weaning (days 48-60), and post-weaning (days 60-360) phases. Quantitative polymerase chain reaction indicated that AGF colonisation occurs within 24 h after birth, with loads slowly increasing during pre-weaning and weaning, then drastically increasing post-weaning. Culture-independent amplicon surveys identified higher alpha diversity during pre-weaning/weaning, compared to post-weaning. AGF community structure underwent a drastic shift post-weaning, from a community enriched in genera commonly encountered in hindgut fermenters to one enriched in genera commonly encountered in adult ruminants. Comparison of AGF community between calves day 1 post-birth and their mothers suggest a major role for maternal transmission, with additional input from cohabitating subjects. This distinct pattern of AGF progression could best be understood in-light of their narrower niche preferences, metabolic specialisation, and physiological optima compared to bacteria, hence eliciting a unique response to changes in feeding pattern and associated structural GIT development during maturation. |
| Author | Montogomery, Dagan Pribil, Elizabeth Youssef, Noha H. Jones, Adrienne L. Elshahed, Mostafa S. Foote, Andrew P. Clayborn, Jordan |
| Author_xml | – sequence: 1 givenname: Adrienne L. surname: Jones fullname: Jones, Adrienne L. organization: Oklahoma State University – sequence: 2 givenname: Jordan surname: Clayborn fullname: Clayborn, Jordan organization: Oklahoma State University – sequence: 3 givenname: Elizabeth surname: Pribil fullname: Pribil, Elizabeth organization: Oklahoma State University – sequence: 4 givenname: Andrew P. surname: Foote fullname: Foote, Andrew P. organization: Oklahoma State University – sequence: 5 givenname: Dagan surname: Montogomery fullname: Montogomery, Dagan organization: Oklahoma State University – sequence: 6 givenname: Mostafa S. orcidid: 0000-0002-1067-1647 surname: Elshahed fullname: Elshahed, Mostafa S. organization: Oklahoma State University – sequence: 7 givenname: Noha H. orcidid: 0000-0001-9159-3785 surname: Youssef fullname: Youssef, Noha H. email: noha@okstate.edu organization: Oklahoma State University |
| BackLink | https://www.ncbi.nlm.nih.gov/pubmed/37305988$$D View this record in MEDLINE/PubMed |
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| Snippet | Establishment of microbial communities in neonatal calves is vital for their growth and overall health. While this process has received considerable attention... |
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| SubjectTerms | adults Bacteria Birth Calves Community structure Dairy cattle Feces Fermenters Fungi Hindgut Microbial activity Microorganisms Neonates Nucleotide sequence Parturition Polymerase chain reaction quantitative polymerase chain reaction species diversity Weaning |
| Title | Temporal progression of anaerobic fungal communities in dairy calves from birth to maturity |
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