Transitions between biomes are common and directional in Bombacoideae (Malvaceae)
Aim To quantify evolutionary transitions between tropical evergreen rain forest and seasonally dry biomes, to test whether biome transitions affect lineage diversification and to examine the robustness of these results to methodological choices. Location The tropics. Time period The Cenozoic. Major...
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Published in | Journal of biogeography Vol. 47; no. 6; pp. 1310 - 1321 |
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Main Authors | , , , , , , , |
Format | Journal Article |
Language | English |
Published |
Oxford
Wiley Subscription Services, Inc
01.06.2020
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Subjects | |
Online Access | Get full text |
ISSN | 0305-0270 1365-2699 |
DOI | 10.1111/jbi.13815 |
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Abstract | Aim
To quantify evolutionary transitions between tropical evergreen rain forest and seasonally dry biomes, to test whether biome transitions affect lineage diversification and to examine the robustness of these results to methodological choices.
Location
The tropics.
Time period
The Cenozoic.
Major taxa studied
The plant subfamily Bombacoideae (Malvaceae).
Methods
We inferred ancestral biomes based on a fossil‐dated molecular phylogeny of 103 species (59% of the clade) and recorded the number of transitions among biomes using biogeographical stochastic mapping based on the dispersal‐extinction‐cladogenesis model. We then estimated diversification rates using state‐specific speciation and extinction rate (SSE) methods. Furthermore, we tested the sensitivity of the results to model choice, phylogenetic uncertainty, measurement error and biome definition.
Results
We found numerous transitions from evergreen rain forest to seasonally dry biomes, and fewer in the opposite direction. These results were robust to methodological choices. Biome type did not influence diversification rates, although this result was subject to uncertainty, especially related to model choice and biome definition.
Main conclusions
Our results contradict the idea of evolutionary biome conservatism in Bombacoideae, and support previous findings that evergreen rain forests serve as a source for the flora of seasonally dry biomes. The impact of biome classification and biome definition on the results suggest caution when using a biome concept for biogeographical reconstruction and diversification rate analysis. |
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AbstractList | Aim To quantify evolutionary transitions between tropical evergreen rain forest and seasonally dry biomes, to test whether biome transitions affect lineage diversification and to examine the robustness of these results to methodological choices. Location The tropics. Time period The Cenozoic. Major taxa studied The plant subfamily Bombacoideae (Malvaceae). Methods We inferred ancestral biomes based on a fossil-dated molecular phylogeny of 103 species (59% of the clade) and recorded the number of transitions among biomes using biogeographical stochastic mapping based on the dispersal-extinction-cladogenesis model. We then estimated diversification rates using state-specific speciation and extinction rate (SSE) methods. Furthermore, we tested the sensitivity of the results to model choice, phylogenetic uncertainty, measurement error and biome definition. Results We found numerous transitions from evergreen rain forest to seasonally dry biomes, and fewer in the opposite direction. These results were robust to methodological choices. Biome type did not influence diversification rates, although this result was subject to uncertainty, especially related to model choice and biome definition. Main conclusions Our results contradict the idea of evolutionary biome conservatism in Bombacoideae, and support previous findings that evergreen rain forests serve as a source for the flora of seasonally dry biomes. The impact of biome classification and biome definition on the results suggest caution when using a biome concept for biogeographical reconstruction and diversification rate analysis. AimTo quantify evolutionary transitions between tropical evergreen rain forest and seasonally dry biomes, to test whether biome transitions affect lineage diversification and to examine the robustness of these results to methodological choices.LocationThe tropics.Time periodThe Cenozoic.Major taxa studiedThe plant subfamily Bombacoideae (Malvaceae).MethodsWe inferred ancestral biomes based on a fossil‐dated molecular phylogeny of 103 species (59% of the clade) and recorded the number of transitions among biomes using biogeographical stochastic mapping based on the dispersal‐extinction‐cladogenesis model. We then estimated diversification rates using state‐specific speciation and extinction rate (SSE) methods. Furthermore, we tested the sensitivity of the results to model choice, phylogenetic uncertainty, measurement error and biome definition.ResultsWe found numerous transitions from evergreen rain forest to seasonally dry biomes, and fewer in the opposite direction. These results were robust to methodological choices. Biome type did not influence diversification rates, although this result was subject to uncertainty, especially related to model choice and biome definition.Main conclusionsOur results contradict the idea of evolutionary biome conservatism in Bombacoideae, and support previous findings that evergreen rain forests serve as a source for the flora of seasonally dry biomes. The impact of biome classification and biome definition on the results suggest caution when using a biome concept for biogeographical reconstruction and diversification rate analysis. Aim To quantify evolutionary transitions between tropical evergreen rain forest and seasonally dry biomes, to test whether biome transitions affect lineage diversification and to examine the robustness of these results to methodological choices. Location The tropics. Time period The Cenozoic. Major taxa studied The plant subfamily Bombacoideae (Malvaceae). Methods We inferred ancestral biomes based on a fossil‐dated molecular phylogeny of 103 species (59% of the clade) and recorded the number of transitions among biomes using biogeographical stochastic mapping based on the dispersal‐extinction‐cladogenesis model. We then estimated diversification rates using state‐specific speciation and extinction rate (SSE) methods. Furthermore, we tested the sensitivity of the results to model choice, phylogenetic uncertainty, measurement error and biome definition. Results We found numerous transitions from evergreen rain forest to seasonally dry biomes, and fewer in the opposite direction. These results were robust to methodological choices. Biome type did not influence diversification rates, although this result was subject to uncertainty, especially related to model choice and biome definition. Main conclusions Our results contradict the idea of evolutionary biome conservatism in Bombacoideae, and support previous findings that evergreen rain forests serve as a source for the flora of seasonally dry biomes. The impact of biome classification and biome definition on the results suggest caution when using a biome concept for biogeographical reconstruction and diversification rate analysis. |
Author | Bacon, Christine D. Alcantara, Suzana Baum, David A. Zizka, Alexander Carvalho‐Sobrinho, Jefferson G. Antonelli, Alexandre Pennington, R. Toby Queiroz, Luciano P. |
Author_xml | – sequence: 1 givenname: Alexander orcidid: 0000-0002-1680-9192 surname: Zizka fullname: Zizka, Alexander email: alexander.zizka@idiv.de organization: University of Gothenburg – sequence: 2 givenname: Jefferson G. orcidid: 0000-0003-3605-0707 surname: Carvalho‐Sobrinho fullname: Carvalho‐Sobrinho, Jefferson G. organization: Universidade Federal do Vale do São Francisco – sequence: 3 givenname: R. Toby orcidid: 0000-0002-8196-288X surname: Pennington fullname: Pennington, R. Toby organization: Royal Botanic Garden Edinburgh – sequence: 4 givenname: Luciano P. surname: Queiroz fullname: Queiroz, Luciano P. organization: Universidade Estadual de Feira de Santana – sequence: 5 givenname: Suzana surname: Alcantara fullname: Alcantara, Suzana organization: Universidade Federal de Santa Catarina – sequence: 6 givenname: David A. surname: Baum fullname: Baum, David A. organization: University of Wisconsin‐Madison – sequence: 7 givenname: Christine D. orcidid: 0000-0003-2341-2705 surname: Bacon fullname: Bacon, Christine D. organization: University of Gothenburg – sequence: 8 givenname: Alexandre orcidid: 0000-0003-1842-9297 surname: Antonelli fullname: Antonelli, Alexandre organization: Royal Botanic Gardens Kew |
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To quantify evolutionary transitions between tropical evergreen rain forest and seasonally dry biomes, to test whether biome transitions affect lineage... AimTo quantify evolutionary transitions between tropical evergreen rain forest and seasonally dry biomes, to test whether biome transitions affect lineage... AIM: To quantify evolutionary transitions between tropical evergreen rain forest and seasonally dry biomes, to test whether biome transitions affect lineage... Aim To quantify evolutionary transitions between tropical evergreen rain forest and seasonally dry biomes, to test whether biome transitions affect lineage... |
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SubjectTerms | biodiversity biogeography Biologi Biological evolution Biological Sciences biome connectivity biome shift Cenozoic Cenozoic era Coniferous forests Dispersal Diversification Ecosystems Environmental Sciences & Ecology evolutionary Extinction Flora geographical distribution Malvaceae Mapping niche conservatism Phylogeny Physical Geography proteaceae Rain rain forest rain forests Rainforests seasonality seasonally dry seasonally dry biomes shifts Speciation Species extinction species richness tropical biodiversity Tropical environments Uncertainty |
Title | Transitions between biomes are common and directional in Bombacoideae (Malvaceae) |
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