Identification of the key amino acid sites of the carbendazim hydrolase (MheI) from a novel carbendazim-degrading strain Mycobacterium sp. SD-4

•Strain SD-4 was the first MBC-degrading strain isolated from the genus of Mycobacterium.•The codon of mheI was optimized to realize its soluble expression in E.coil.•Key amino acid sites of MheI were identified. A novel carbendazim (methyl-1H-benzimidazol-2-ylcarbamate, or MBC) degrading strain SD-...

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Published inJournal of hazardous materials Vol. 331; pp. 55 - 62
Main Authors Zhang, Yingkun, Wang, Hui, Wang, Xiang, Hu, Bo, Zhang, Chenfei, Jin, Wen, Zhu, Shijun, Hu, Gang, Hong, Qing
Format Journal Article
LanguageEnglish
Published Netherlands Elsevier B.V 05.06.2017
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Abstract •Strain SD-4 was the first MBC-degrading strain isolated from the genus of Mycobacterium.•The codon of mheI was optimized to realize its soluble expression in E.coil.•Key amino acid sites of MheI were identified. A novel carbendazim (methyl-1H-benzimidazol-2-ylcarbamate, or MBC) degrading strain SD-4 was isolated and identified preliminarily as Mycobacterium sp. according to its phenotypic features and phylogenetic analysis. This strain could utilize MBC as the sole carbon and nitrogen sources for growth and degrade 50mgL−1 MBC at the average degradation rate of 0.63mgL−1h−1. Strain SD-4 degraded MBC through the typical pathway, in which MBC was first hydrolyzed by MheI to 2-aminobenzimidazole (2-AB) and then converted to 2-hydroxybenzimidazole (2-HB). The MBC hydrolase encoding gene mheI was cloned from strain SD-4 and successfully expressed in Escherichia coli by codon optimization. The sulfhydryl-blocking assay revealed that the activity of MheI was closely related to cysteine, and the site-directed mutation experiment showed that Cys16 and Cys222 played important roles during the hydrolysis of MBC by MheI. Therefore they affected its activity directly and were defined as the key amino acid sites.
AbstractList A novel carbendazim (methyl-1H-benzimidazol-2-ylcarbamate, or MBC) degrading strain SD-4 was isolated and identified preliminarily as Mycobacterium sp. according to its phenotypic features and phylogenetic analysis. This strain could utilize MBC as the sole carbon and nitrogen sources for growth and degrade 50mgL MBC at the average degradation rate of 0.63mgL h . Strain SD-4 degraded MBC through the typical pathway, in which MBC was first hydrolyzed by MheI to 2-aminobenzimidazole (2-AB) and then converted to 2-hydroxybenzimidazole (2-HB). The MBC hydrolase encoding gene mheI was cloned from strain SD-4 and successfully expressed in Escherichia coli by codon optimization. The sulfhydryl-blocking assay revealed that the activity of MheI was closely related to cysteine, and the site-directed mutation experiment showed that Cys16 and Cys222 played important roles during the hydrolysis of MBC by MheI. Therefore they affected its activity directly and were defined as the key amino acid sites.
•Strain SD-4 was the first MBC-degrading strain isolated from the genus of Mycobacterium.•The codon of mheI was optimized to realize its soluble expression in E.coil.•Key amino acid sites of MheI were identified. A novel carbendazim (methyl-1H-benzimidazol-2-ylcarbamate, or MBC) degrading strain SD-4 was isolated and identified preliminarily as Mycobacterium sp. according to its phenotypic features and phylogenetic analysis. This strain could utilize MBC as the sole carbon and nitrogen sources for growth and degrade 50mgL−1 MBC at the average degradation rate of 0.63mgL−1h−1. Strain SD-4 degraded MBC through the typical pathway, in which MBC was first hydrolyzed by MheI to 2-aminobenzimidazole (2-AB) and then converted to 2-hydroxybenzimidazole (2-HB). The MBC hydrolase encoding gene mheI was cloned from strain SD-4 and successfully expressed in Escherichia coli by codon optimization. The sulfhydryl-blocking assay revealed that the activity of MheI was closely related to cysteine, and the site-directed mutation experiment showed that Cys16 and Cys222 played important roles during the hydrolysis of MBC by MheI. Therefore they affected its activity directly and were defined as the key amino acid sites.
A novel carbendazim (methyl-1H-benzimidazol-2-ylcarbamate, or MBC) degrading strain SD-4 was isolated and identified preliminarily as Mycobacterium sp. according to its phenotypic features and phylogenetic analysis. This strain could utilize MBC as the sole carbon and nitrogen sources for growth and degrade 50mgL-1 MBC at the average degradation rate of 0.63mgL-1h-1. Strain SD-4 degraded MBC through the typical pathway, in which MBC was first hydrolyzed by MheI to 2-aminobenzimidazole (2-AB) and then converted to 2-hydroxybenzimidazole (2-HB). The MBC hydrolase encoding gene mheI was cloned from strain SD-4 and successfully expressed in Escherichia coli by codon optimization. The sulfhydryl-blocking assay revealed that the activity of MheI was closely related to cysteine, and the site-directed mutation experiment showed that Cys16 and Cys222 played important roles during the hydrolysis of MBC by MheI. Therefore they affected its activity directly and were defined as the key amino acid sites.
Author Hong, Qing
Wang, Xiang
Zhu, Shijun
Hu, Gang
Wang, Hui
Zhang, Chenfei
Zhang, Yingkun
Jin, Wen
Hu, Bo
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Keywords mheI
Mycobacterium sp. SD-4
Expression
Carbendazim
Key amino acid sites
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Snippet •Strain SD-4 was the first MBC-degrading strain isolated from the genus of Mycobacterium.•The codon of mheI was optimized to realize its soluble expression in...
A novel carbendazim (methyl-1H-benzimidazol-2-ylcarbamate, or MBC) degrading strain SD-4 was isolated and identified preliminarily as Mycobacterium sp....
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SubjectTerms Benzimidazoles - metabolism
Carbamates - metabolism
Carbendazim
Escherichia coli
Expression
Genes, Bacterial
Hydrolases - chemistry
Hydrolases - genetics
Hydrolases - metabolism
Key amino acid sites
mheI
Mycobacterium - enzymology
Mycobacterium - genetics
Mycobacterium - isolation & purification
Mycobacterium sp. SD-4
Title Identification of the key amino acid sites of the carbendazim hydrolase (MheI) from a novel carbendazim-degrading strain Mycobacterium sp. SD-4
URI https://dx.doi.org/10.1016/j.jhazmat.2017.02.007
https://www.ncbi.nlm.nih.gov/pubmed/28242529
https://search.proquest.com/docview/1872870764
Volume 331
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