Identification of the key amino acid sites of the carbendazim hydrolase (MheI) from a novel carbendazim-degrading strain Mycobacterium sp. SD-4
•Strain SD-4 was the first MBC-degrading strain isolated from the genus of Mycobacterium.•The codon of mheI was optimized to realize its soluble expression in E.coil.•Key amino acid sites of MheI were identified. A novel carbendazim (methyl-1H-benzimidazol-2-ylcarbamate, or MBC) degrading strain SD-...
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Published in | Journal of hazardous materials Vol. 331; pp. 55 - 62 |
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Main Authors | , , , , , , , , |
Format | Journal Article |
Language | English |
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Elsevier B.V
05.06.2017
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Abstract | •Strain SD-4 was the first MBC-degrading strain isolated from the genus of Mycobacterium.•The codon of mheI was optimized to realize its soluble expression in E.coil.•Key amino acid sites of MheI were identified.
A novel carbendazim (methyl-1H-benzimidazol-2-ylcarbamate, or MBC) degrading strain SD-4 was isolated and identified preliminarily as Mycobacterium sp. according to its phenotypic features and phylogenetic analysis. This strain could utilize MBC as the sole carbon and nitrogen sources for growth and degrade 50mgL−1 MBC at the average degradation rate of 0.63mgL−1h−1. Strain SD-4 degraded MBC through the typical pathway, in which MBC was first hydrolyzed by MheI to 2-aminobenzimidazole (2-AB) and then converted to 2-hydroxybenzimidazole (2-HB). The MBC hydrolase encoding gene mheI was cloned from strain SD-4 and successfully expressed in Escherichia coli by codon optimization. The sulfhydryl-blocking assay revealed that the activity of MheI was closely related to cysteine, and the site-directed mutation experiment showed that Cys16 and Cys222 played important roles during the hydrolysis of MBC by MheI. Therefore they affected its activity directly and were defined as the key amino acid sites. |
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AbstractList | A novel carbendazim (methyl-1H-benzimidazol-2-ylcarbamate, or MBC) degrading strain SD-4 was isolated and identified preliminarily as Mycobacterium sp. according to its phenotypic features and phylogenetic analysis. This strain could utilize MBC as the sole carbon and nitrogen sources for growth and degrade 50mgL
MBC at the average degradation rate of 0.63mgL
h
. Strain SD-4 degraded MBC through the typical pathway, in which MBC was first hydrolyzed by MheI to 2-aminobenzimidazole (2-AB) and then converted to 2-hydroxybenzimidazole (2-HB). The MBC hydrolase encoding gene mheI was cloned from strain SD-4 and successfully expressed in Escherichia coli by codon optimization. The sulfhydryl-blocking assay revealed that the activity of MheI was closely related to cysteine, and the site-directed mutation experiment showed that Cys16 and Cys222 played important roles during the hydrolysis of MBC by MheI. Therefore they affected its activity directly and were defined as the key amino acid sites. •Strain SD-4 was the first MBC-degrading strain isolated from the genus of Mycobacterium.•The codon of mheI was optimized to realize its soluble expression in E.coil.•Key amino acid sites of MheI were identified. A novel carbendazim (methyl-1H-benzimidazol-2-ylcarbamate, or MBC) degrading strain SD-4 was isolated and identified preliminarily as Mycobacterium sp. according to its phenotypic features and phylogenetic analysis. This strain could utilize MBC as the sole carbon and nitrogen sources for growth and degrade 50mgL−1 MBC at the average degradation rate of 0.63mgL−1h−1. Strain SD-4 degraded MBC through the typical pathway, in which MBC was first hydrolyzed by MheI to 2-aminobenzimidazole (2-AB) and then converted to 2-hydroxybenzimidazole (2-HB). The MBC hydrolase encoding gene mheI was cloned from strain SD-4 and successfully expressed in Escherichia coli by codon optimization. The sulfhydryl-blocking assay revealed that the activity of MheI was closely related to cysteine, and the site-directed mutation experiment showed that Cys16 and Cys222 played important roles during the hydrolysis of MBC by MheI. Therefore they affected its activity directly and were defined as the key amino acid sites. A novel carbendazim (methyl-1H-benzimidazol-2-ylcarbamate, or MBC) degrading strain SD-4 was isolated and identified preliminarily as Mycobacterium sp. according to its phenotypic features and phylogenetic analysis. This strain could utilize MBC as the sole carbon and nitrogen sources for growth and degrade 50mgL-1 MBC at the average degradation rate of 0.63mgL-1h-1. Strain SD-4 degraded MBC through the typical pathway, in which MBC was first hydrolyzed by MheI to 2-aminobenzimidazole (2-AB) and then converted to 2-hydroxybenzimidazole (2-HB). The MBC hydrolase encoding gene mheI was cloned from strain SD-4 and successfully expressed in Escherichia coli by codon optimization. The sulfhydryl-blocking assay revealed that the activity of MheI was closely related to cysteine, and the site-directed mutation experiment showed that Cys16 and Cys222 played important roles during the hydrolysis of MBC by MheI. Therefore they affected its activity directly and were defined as the key amino acid sites. |
Author | Hong, Qing Wang, Xiang Zhu, Shijun Hu, Gang Wang, Hui Zhang, Chenfei Zhang, Yingkun Jin, Wen Hu, Bo |
Author_xml | – sequence: 1 givenname: Yingkun surname: Zhang fullname: Zhang, Yingkun organization: Key Laboratory of Agricultural Environmental Microbiology, Ministry of Agriculture, College of life sciences, Nanjing Agricultural University, Nanjing, 210095, PR China – sequence: 2 givenname: Hui surname: Wang fullname: Wang, Hui organization: Key Laboratory of Agricultural Environmental Microbiology, Ministry of Agriculture, College of life sciences, Nanjing Agricultural University, Nanjing, 210095, PR China – sequence: 3 givenname: Xiang surname: Wang fullname: Wang, Xiang organization: Key Laboratory of Agricultural Environmental Microbiology, Ministry of Agriculture, College of life sciences, Nanjing Agricultural University, Nanjing, 210095, PR China – sequence: 4 givenname: Bo surname: Hu fullname: Hu, Bo organization: Industrial Product Division, Intrexon Corporation, South San Francisco, CA, 94080, USA – sequence: 5 givenname: Chenfei surname: Zhang fullname: Zhang, Chenfei organization: Key Laboratory of Agricultural Environmental Microbiology, Ministry of Agriculture, College of life sciences, Nanjing Agricultural University, Nanjing, 210095, PR China – sequence: 6 givenname: Wen surname: Jin fullname: Jin, Wen organization: Key Laboratory of Agricultural Environmental Microbiology, Ministry of Agriculture, College of life sciences, Nanjing Agricultural University, Nanjing, 210095, PR China – sequence: 7 givenname: Shijun surname: Zhu fullname: Zhu, Shijun organization: Key Laboratory of Agricultural Environmental Microbiology, Ministry of Agriculture, College of life sciences, Nanjing Agricultural University, Nanjing, 210095, PR China – sequence: 8 givenname: Gang surname: Hu fullname: Hu, Gang organization: Key Laboratory of Agricultural Environmental Microbiology, Ministry of Agriculture, College of life sciences, Nanjing Agricultural University, Nanjing, 210095, PR China – sequence: 9 givenname: Qing surname: Hong fullname: Hong, Qing email: hongqing@njau.edu.cn organization: Key Laboratory of Agricultural Environmental Microbiology, Ministry of Agriculture, College of life sciences, Nanjing Agricultural University, Nanjing, 210095, PR China |
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Keywords | mheI Mycobacterium sp. SD-4 Expression Carbendazim Key amino acid sites |
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Snippet | •Strain SD-4 was the first MBC-degrading strain isolated from the genus of Mycobacterium.•The codon of mheI was optimized to realize its soluble expression in... A novel carbendazim (methyl-1H-benzimidazol-2-ylcarbamate, or MBC) degrading strain SD-4 was isolated and identified preliminarily as Mycobacterium sp.... |
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SubjectTerms | Benzimidazoles - metabolism Carbamates - metabolism Carbendazim Escherichia coli Expression Genes, Bacterial Hydrolases - chemistry Hydrolases - genetics Hydrolases - metabolism Key amino acid sites mheI Mycobacterium - enzymology Mycobacterium - genetics Mycobacterium - isolation & purification Mycobacterium sp. SD-4 |
Title | Identification of the key amino acid sites of the carbendazim hydrolase (MheI) from a novel carbendazim-degrading strain Mycobacterium sp. SD-4 |
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