Genetic variation and phylogenetic analyses reveal transmission clues of Lentinula edodes partitivirus 1 (LePV1) from the Chinese L. edodes core collection

• Published in: Virus research Vol. 255; pp. 127 - 132
• Main Authors: Wang, Jinjie, Guo, Mengpei, Sun, Yijia, Bian, Yinbing, Zhou, Yan, Xu, Zhangyi
• Format: Journal Article
• Language: English
• Published: Netherlands Elsevier B.V 15.08.2018
• Subjects: Base Sequence; basidiospores; China; domestication; Fungal Viruses - classification; Fungal Viruses - genetics; Genetic Variation; Genome, Viral - genetics; germplasm; hosts; hybridization; Lentinula edodes; Lentinula edodes partitivirus 1; mycoviruses; Natural selection; Open Reading Frames; Partitiviridae; Phylogenetic analysis; Phylogeny; RNA, Viral - genetics; Selection, Genetic; Sequence Analysis, RNA; Sequence Homology; Shiitake Mushrooms - virology; Spores - virology; Transmission; vegetative propagation; China; Phylogenetic analysis; Lentinula edodes partitivirus 1; Genetic variation; Transmission; Natural selection

•LePV1 from genetically-diverse/geographically far away L. edodes strains are highly conserved.•LePV1 isolates were grouped into two distinct groups without geographical bias.•RdRp gene undergoes a stronger negative selection pressure than CP gene. Lentinula edodes partitivirus 1 (LePV1), a new myco...