DiatOmicBase: a versatile gene‐centered platform for mining functional omics data in diatom research

• Published in: The Plant journal : for cell and molecular biology Vol. 121; no. 6; pp. e70061 - n/a
• Main Authors: Villar, Emilie, Zweig, Nathanaël, Vincens, Pierre, Cruz de Carvalho, Helena, Duchene, Carole, Liu, Shun, Monteil, Raphael, Dorrell, Richard G., Fabris, Michele, Vandepoele, Klaas, Bowler, Chris, Falciatore, Angela
• Format: Journal Article
• Language: English
• Published: England Blackwell Publishing Ltd 01.03.2025; Wiley; John Wiley and Sons Inc
• Subjects: Annotations; Aquatic environment; Availability; Biochemistry, Molecular Biology; bioinformatics; Biotechnology; cell biology; Data analysis; data collection; Data Mining; Databases, Genetic; Datasets; diatoms; Diatoms - genetics; DNA methylation; ecotype variants; ecotypes; evolution; Experiments; gene expression regulation; gene models; Gene sequencing; genes; Genetic resources; Genome - genetics; genome browser; genome portal; Genomes; Genomics; histone marks; Histones; Life Sciences; Marine microorganisms; methylation; microalgae; Microbiology and Parasitology; Molecular Sequence Annotation; Network analysis; non‐coding RNAs; Phaeodactylum tricornutum; physiology; Plankton; protein domains; Proteomics; Quantitative Methods; Resource; Ribonucleic acid; RNA; RNA‐Seq datasets; sequence analysis; species; Thalassiosira pseudonana; Transcriptome - genetics; Transcriptomics; Thalassiosira pseudonana; ecotype variants; diatoms; RNA‐Seq datasets; Phaeodactylum tricornutum; genome portal; genome browser; gene models; histone marks; protein domains; non‐coding RNAs; RNA-Seq datasets; noncoding RNAs

SUMMARY Diatoms are prominent microalgae found in all aquatic environments. Over the last 20 years, thanks to the availability of genomic and genetic resources, diatom species such as Phaeodactylum tricornutum and Thalassiosira pseudonana have emerged as valuable experimental model systems for explo...