High-throughput development of genome-wide locus-specific informative SSR markers in wheat
Dear Editor,Although simple sequence repeat（SSR）markers are not new,they are still useful and often used markers in molecular mapping and marker-assisted breeding,particularly in developing countries.However,locus-specific SSR markers could be more useful and informative in wheat breeding and geneti...
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| Published in | Science China. Life sciences Vol. 60; no. 6; pp. 671 - 673 |
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| Main Authors | , , , , , , |
| Format | Journal Article |
| Language | English |
| Published |
Beijing
Science China Press
01.06.2017
Springer Nature B.V |
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| Online Access | Get full text |
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| Abstract | Dear Editor,Although simple sequence repeat（SSR）markers are not new,they are still useful and often used markers in molecular mapping and marker-assisted breeding,particularly in developing countries.However,locus-specific SSR markers could be more useful and informative in wheat breeding and genetic studies.In the present study,221,911 locus-specific SSR markers were designed.Verification of polymorphisms showed that the proportion of polymorphic markers increases with an increase in SSR size. |
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| AbstractList | Dear Editor,Although simple sequence repeat（SSR）markers are not new,they are still useful and often used markers in molecular mapping and marker-assisted breeding,particularly in developing countries.However,locus-specific SSR markers could be more useful and informative in wheat breeding and genetic studies.In the present study,221,911 locus-specific SSR markers were designed.Verification of polymorphisms showed that the proportion of polymorphic markers increases with an increase in SSR size. |
| Author | Lei Li Fayu Sun Di Wu Fei Zhen Guihua Bai Derong Gao Tao Li |
| AuthorAffiliation | Jiangsu Provincial Key Laboratory of Crop Genetics and Physiology/Co-Innovation Center for Modern Production Technology of Grain Crops Key Laboratory of Plant Functional Genomics of Chinese Ministry of Education; Wheat Research Center, Yangzhou University, Yangzhou 225009, China Department of Agronomy, Kansas State University, Manhattan KS 66506, USA USDA-ARS Hard Winter Wheat Genetics Research Unit, Manhattan KS 66506, USA Lixiahe Aeademy of Agricultural Sciences, Yangzhou 225000, China |
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| BackLink | https://www.ncbi.nlm.nih.gov/pubmed/28000017$$D View this record in MEDLINE/PubMed |
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| Cites_doi | 10.1038/nature12028 10.1371/journal.pone.0032253 10.1038/nature11997 10.1101/gr.7.5.541 |
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| Copyright | Science in China Press and Springer-Verlag GmbH 2016 Science China Life Sciences is a copyright of Springer, 2017. |
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| DOI | 10.1007/s11427-016-0252-x |
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| Notes | locus wheat informative breeding polymorphic throughput SSRs Aegilops primer Triticum Dear Editor,Although simple sequence repeat（SSR）markers are not new,they are still useful and often used markers in molecular mapping and marker-assisted breeding,particularly in developing countries.However,locus-specific SSR markers could be more useful and informative in wheat breeding and genetic studies.In the present study,221,911 locus-specific SSR markers were designed.Verification of polymorphisms showed that the proportion of polymorphic markers increases with an increase in SSR size. 11-5841/Q SourceType-Scholarly Journals-1 ObjectType-Correspondence-1 content type line 14 content type line 23 |
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| References | Schuler (CR5) 1997; 7 Ling, Zhao, Liu, Wang, Sun, Zhang, Fan, Li, Dong, Tao, Gao, Wu, Li, Cui, Guo, Zheng, Wang, Yu, Liang, Yang, Lou, Chen, Feng, Jian, Zhang, Luo, Jiang, Liu, Wang, Sha, Zhang, Wu, Tang, Shen, Xue, Zou, Wang, Liu, Wang, Yang, An, Dong, Zhang, Zhang, Luo, Dvorak, Tong, Wang, Yang, Li, Wang, Zhang, Wang (CR2) 2013; 496 Rozen, Skaletsky (CR4) 2000; 132 Jia, Zhao, Kong, Li, Zhao, He, Appels, Pfeifer, Tao, Zhang, Jing, Zhang, Ma, Gao, Gao, Spannagl, Mayer, Li, Pan, Zheng, Hu, Xia, Li, Liang, Chen, Wicker, Gou, Kuang, He, Luo, Keller, Xia, Lu, Wang, Zou, Zhang, Xu, Gao, Middleton, Quan, Liu, Wang, Wang, Yang, Liu, He, Mao, Wang (CR1) 2013; 496 Poland, Brown, Sorrells, Jannink (CR3) 2012; 7 G.D. Schuler (252_CR5) 1997; 7 S. Rozen (252_CR4) 2000; 132 J.A. Poland (252_CR3) 2012; 7 J. Jia (252_CR1) 2013; 496 H.Q. Ling (252_CR2) 2013; 496 |
| References_xml | – volume: 496 start-page: 91 year: 2013 end-page: 95 ident: CR1 article-title: draft genome sequence reveals a gene repertoire for wheat adaptation publication-title: Nature doi: 10.1038/nature12028 – volume: 7 start-page: e32253 year: 2012 ident: CR3 article-title: Development of high-density genetic maps for barley and wheat using a novel two-enzyme genotyping-by-sequencing approach publication-title: PLoS ONE doi: 10.1371/journal.pone.0032253 – volume: 496 start-page: 87 year: 2013 end-page: 90 ident: CR2 article-title: Draft genome of the wheat A-genome progenitor publication-title: Nature doi: 10.1038/nature11997 – volume: 132 start-page: 365 year: 2000 end-page: 386 ident: CR4 article-title: Primer3 on the www for general users and for biologist programmers publication-title: Methods Mol Biol – volume: 7 start-page: 541 year: 1997 end-page: 550 ident: CR5 article-title: Sequence mapping by electronic PCR publication-title: Genome Res doi: 10.1101/gr.7.5.541 – volume: 496 start-page: 91 year: 2013 ident: 252_CR1 publication-title: Nature doi: 10.1038/nature12028 – volume: 496 start-page: 87 year: 2013 ident: 252_CR2 publication-title: Nature doi: 10.1038/nature11997 – volume: 7 start-page: 541 year: 1997 ident: 252_CR5 publication-title: Genome Res doi: 10.1101/gr.7.5.541 – volume: 7 start-page: e32253 year: 2012 ident: 252_CR3 publication-title: PLoS ONE doi: 10.1371/journal.pone.0032253 – volume: 132 start-page: 365 year: 2000 ident: 252_CR4 publication-title: Methods Mol Biol |
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| SubjectTerms | Biomedical and Life Sciences Genetic Markers Genome, Plant Genomes High-Throughput Nucleotide Sequencing Letter to the Editor Life Sciences SSR标记 Triticum - genetics 位点特异性 全基因组 分子标记辅助育种 多态性标记 小麦育种 开发 高通量 |
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| Title | High-throughput development of genome-wide locus-specific informative SSR markers in wheat |
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