An inclusive study to elucidation the heavy metals-derived ecological risk nexus with antibiotic resistome functional shape of niche microbial community and their carbon substrate utilization ability in serpentine soil
Heavy metals (HMs) contained terrestrial ecosystems are often significantly display the antibiotic resistome in the pristine area due to increasing pressure from anthropogenic activity, is complex and emerging research interest. This study investigated that impact of chromium (Cr), nickel (Ni), coba...
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| Published in | Journal of environmental management Vol. 366; p. 121688 |
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| Main Authors | , , , , , , |
| Format | Journal Article |
| Language | English |
| Published |
England
Elsevier Ltd
01.08.2024
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| Subjects | |
| Online Access | Get full text |
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| Abstract | Heavy metals (HMs) contained terrestrial ecosystems are often significantly display the antibiotic resistome in the pristine area due to increasing pressure from anthropogenic activity, is complex and emerging research interest. This study investigated that impact of chromium (Cr), nickel (Ni), cobalt (Co) concentrations in serpentine soil on the induction of antibiotic resistance genes and antimicrobial resistance within the native bacterial community as well as demonstrated their metabolic fingerprint. The full-length 16S-rRNA amplicon sequencing observed an increased abundance of Firmicutes, Actinobacteriota, and Acidobacteriota in serpentine soil. The microbial community in serpentine soil displayed varying preferences for different carbon sources, with some, such as carbohydrates and carboxylic acids, being consistently favored. Notably, 27 potential antibiotic resistance opportunistic bacterial genera have been identified in different serpentine soils. Among these, Lapillicoccus, Rubrobacter, Lacibacter, Chloroplast, Nitrospira, Rokubacteriales, Acinetobacter, Pseudomonas were significantly enriched in high and medium HMs concentrated serpentine soil samples. Functional profiling results illustrated that vancomycin resistance pathways were prevalent across all groups. Additionally, beta-lactamase, aminoglycoside, tetracycline, and vancomycin resistance involving specific bio-maker genes (ampC, penP, OXA, aacA, strB, hyg, aph, tet(A/B), otr(C), tet(M/O/Q), van(A/B/D), and vanJ) were the most abundant and enriched in the HMs-contaminated serpentine soil. Overall, this study highlighted that heavy-metal enriched serpentine soil is potential to support the proliferation of bacterial antibiotic resistance in native microbiome, and might able to spread antibiotic resistance to surrounding environment.
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•Cr, Ni, Co ecotoxicity imbalance microbial C-source utilization in serpentine soil.•Vancomycin resistome induce within bacterial community of HMs rich serpentine soil.•HMs co-select the opportunistic bacteria functional adaptation in serpentine soil.•Opportunistic bacteria e.g. Lapillicoccus &Rubrobacter enriched in serpentine soil.•Key ARGs of native bacteria allied with β-lactamase, aminoglycoside, vancomycin. |
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| AbstractList | Heavy metals (HMs) contained terrestrial ecosystems are often significantly display the antibiotic resistome in the pristine area due to increasing pressure from anthropogenic activity, is complex and emerging research interest. This study investigated that impact of chromium (Cr), nickel (Ni), cobalt (Co) concentrations in serpentine soil on the induction of antibiotic resistance genes and antimicrobial resistance within the native bacterial community as well as demonstrated their metabolic fingerprint. The full-length 16S-rRNA amplicon sequencing observed an increased abundance of Firmicutes, Actinobacteriota, and Acidobacteriota in serpentine soil. The microbial community in serpentine soil displayed varying preferences for different carbon sources, with some, such as carbohydrates and carboxylic acids, being consistently favored. Notably, 27 potential antibiotic resistance opportunistic bacterial genera have been identified in different serpentine soils. Among these, Lapillicoccus, Rubrobacter, Lacibacter, Chloroplast, Nitrospira, Rokubacteriales, Acinetobacter, Pseudomonas were significantly enriched in high and medium HMs concentrated serpentine soil samples. Functional profiling results illustrated that vancomycin resistance pathways were prevalent across all groups. Additionally, beta-lactamase, aminoglycoside, tetracycline, and vancomycin resistance involving specific bio-maker genes (ampC, penP, OXA, aacA, strB, hyg, aph, tet(A/B), otr(C), tet(M/O/Q), van(A/B/D), and vanJ) were the most abundant and enriched in the HMs-contaminated serpentine soil. Overall, this study highlighted that heavy-metal enriched serpentine soil is potential to support the proliferation of bacterial antibiotic resistance in native microbiome, and might able to spread antibiotic resistance to surrounding environment.
[Display omitted]
•Cr, Ni, Co ecotoxicity imbalance microbial C-source utilization in serpentine soil.•Vancomycin resistome induce within bacterial community of HMs rich serpentine soil.•HMs co-select the opportunistic bacteria functional adaptation in serpentine soil.•Opportunistic bacteria e.g. Lapillicoccus &Rubrobacter enriched in serpentine soil.•Key ARGs of native bacteria allied with β-lactamase, aminoglycoside, vancomycin. Heavy metals (HMs) contained terrestrial ecosystems are often significantly display the antibiotic resistome in the pristine area due to increasing pressure from anthropogenic activity, is complex and emerging research interest. This study investigated that impact of chromium (Cr), nickel (Ni), cobalt (Co) concentrations in serpentine soil on the induction of antibiotic resistance genes and antimicrobial resistance within the native bacterial community as well as demonstrated their metabolic fingerprint. The full-length 16S-rRNA amplicon sequencing observed an increased abundance of Firmicutes, Actinobacteriota, and Acidobacteriota in serpentine soil. The microbial community in serpentine soil displayed varying preferences for different carbon sources, with some, such as carbohydrates and carboxylic acids, being consistently favored. Notably, 27 potential antibiotic resistance opportunistic bacterial genera have been identified in different serpentine soils. Among these, Lapillicoccus, Rubrobacter, Lacibacter, Chloroplast, Nitrospira, Rokubacteriales, Acinetobacter, Pseudomonas were significantly enriched in high and medium HMs concentrated serpentine soil samples. Functional profiling results illustrated that vancomycin resistance pathways were prevalent across all groups. Additionally, beta-lactamase, aminoglycoside, tetracycline, and vancomycin resistance involving specific bio-maker genes (ampC, penP, OXA, aacA, strB, hyg, aph, tet(A/B), otr(C), tet(M/O/Q), van(A/B/D), and vanJ) were the most abundant and enriched in the HMs-contaminated serpentine soil. Overall, this study highlighted that heavy-metal enriched serpentine soil is potential to support the proliferation of bacterial antibiotic resistance in native microbiome, and might able to spread antibiotic resistance to surrounding environment.Heavy metals (HMs) contained terrestrial ecosystems are often significantly display the antibiotic resistome in the pristine area due to increasing pressure from anthropogenic activity, is complex and emerging research interest. This study investigated that impact of chromium (Cr), nickel (Ni), cobalt (Co) concentrations in serpentine soil on the induction of antibiotic resistance genes and antimicrobial resistance within the native bacterial community as well as demonstrated their metabolic fingerprint. The full-length 16S-rRNA amplicon sequencing observed an increased abundance of Firmicutes, Actinobacteriota, and Acidobacteriota in serpentine soil. The microbial community in serpentine soil displayed varying preferences for different carbon sources, with some, such as carbohydrates and carboxylic acids, being consistently favored. Notably, 27 potential antibiotic resistance opportunistic bacterial genera have been identified in different serpentine soils. Among these, Lapillicoccus, Rubrobacter, Lacibacter, Chloroplast, Nitrospira, Rokubacteriales, Acinetobacter, Pseudomonas were significantly enriched in high and medium HMs concentrated serpentine soil samples. Functional profiling results illustrated that vancomycin resistance pathways were prevalent across all groups. Additionally, beta-lactamase, aminoglycoside, tetracycline, and vancomycin resistance involving specific bio-maker genes (ampC, penP, OXA, aacA, strB, hyg, aph, tet(A/B), otr(C), tet(M/O/Q), van(A/B/D), and vanJ) were the most abundant and enriched in the HMs-contaminated serpentine soil. Overall, this study highlighted that heavy-metal enriched serpentine soil is potential to support the proliferation of bacterial antibiotic resistance in native microbiome, and might able to spread antibiotic resistance to surrounding environment. Heavy metals (HMs) contained terrestrial ecosystems are often significantly display the antibiotic resistome in the pristine area due to increasing pressure from anthropogenic activity, is complex and emerging research interest. This study investigated that impact of chromium (Cr), nickel (Ni), cobalt (Co) concentrations in serpentine soil on the induction of antibiotic resistance genes and antimicrobial resistance within the native bacterial community as well as demonstrated their metabolic fingerprint. The full-length 16S-rRNA amplicon sequencing observed an increased abundance of Firmicutes, Actinobacteriota, and Acidobacteriota in serpentine soil. The microbial community in serpentine soil displayed varying preferences for different carbon sources, with some, such as carbohydrates and carboxylic acids, being consistently favored. Notably, 27 potential antibiotic resistance opportunistic bacterial genera have been identified in different serpentine soils. Among these, Lapillicoccus, Rubrobacter, Lacibacter, Chloroplast, Nitrospira, Rokubacteriales, Acinetobacter, Pseudomonas were significantly enriched in high and medium HMs concentrated serpentine soil samples. Functional profiling results illustrated that vancomycin resistance pathways were prevalent across all groups. Additionally, beta-lactamase, aminoglycoside, tetracycline, and vancomycin resistance involving specific bio-maker genes (ampC, penP, OXA, aacA, strB, hyg, aph, tet(A/B), otr(C), tet(M/O/Q), van(A/B/D), and vanJ) were the most abundant and enriched in the HMs-contaminated serpentine soil. Overall, this study highlighted that heavy-metal enriched serpentine soil is potential to support the proliferation of bacterial antibiotic resistance in native microbiome, and might able to spread antibiotic resistance to surrounding environment. |
| ArticleNumber | 121688 |
| Author | Asif, Aslia Koner, Suprokash Chen, Kuang-Ying Hsu, Bing-Mu Hseu, Zeng-Yei Chang, Ed-Haun Chen, Jung-Sheng |
| Author_xml | – sequence: 1 givenname: Suprokash surname: Koner fullname: Koner, Suprokash organization: Department of Earth and Environmental Sciences, National Chung Cheng University, Chiayi County, Taiwan – sequence: 2 givenname: Jung-Sheng surname: Chen fullname: Chen, Jung-Sheng organization: Department of Medical Research, E-Da Hospital, I-Shou University, Kaohsiung, Taiwan – sequence: 3 givenname: Zeng-Yei surname: Hseu fullname: Hseu, Zeng-Yei organization: Department of Agricultural Chemistry, National Taiwan University, Taipei, Taiwan – sequence: 4 givenname: Ed-Haun surname: Chang fullname: Chang, Ed-Haun organization: Department of Nursing, MacKay Junior College of Medicine, Nursing and Management, Beitou, Taipei, Taiwan – sequence: 5 givenname: Kuang-Ying surname: Chen fullname: Chen, Kuang-Ying organization: Department of Biomedical Sciences, National Chung Cheng University, Chiayi County, Taiwan – sequence: 6 givenname: Aslia surname: Asif fullname: Asif, Aslia organization: Department of Earth and Environmental Sciences, National Chung Cheng University, Chiayi County, Taiwan – sequence: 7 givenname: Bing-Mu orcidid: 0000-0002-2988-8408 surname: Hsu fullname: Hsu, Bing-Mu email: bmhsu@ccu.edu.tw organization: Department of Earth and Environmental Sciences, National Chung Cheng University, Chiayi County, Taiwan |
| BackLink | https://www.ncbi.nlm.nih.gov/pubmed/38971059$$D View this record in MEDLINE/PubMed |
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| Keywords | Soil microbiome Metabolic activity Heavy metal's ecological risk Ultramafic settings Antibiotics resistome |
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| SubjectTerms | Acinetobacter aminoglycosides anthropogenic activities Anti-Bacterial Agents - pharmacology antibiotic resistance antibiotic resistance genes Antibiotics resistome Bacteria - drug effects Bacteria - genetics Bacteria - metabolism bacterial communities beta-lactamase Carbon chloroplasts chromium cobalt Drug Resistance, Microbial - genetics environmental management Firmicutes Heavy metal's ecological risk heavy metals Metabolic activity Metals, Heavy - toxicity microbiome Microbiota - drug effects nickel Pseudomonas risk RNA, Ribosomal, 16S Rubrobacter serpentine serpentine soils Soil - chemistry Soil Microbiology Soil microbiome Soil Pollutants - toxicity tetracycline Ultramafic settings vancomycin |
| Title | An inclusive study to elucidation the heavy metals-derived ecological risk nexus with antibiotic resistome functional shape of niche microbial community and their carbon substrate utilization ability in serpentine soil |
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