Species‐specific phylogeographical patterns and Pleistocene east–west divergence in Annona (Annonaceae) in the Brazilian Cerrado

The Brazilian Cerrado is the most diverse savanna in the world. Phylogeographical patterns for Cerrado tree species are relatively congruent; however, the causes of these patterns are not clear. Ours aims were to investigate phylogeographical patterns in two co‐distributed Annona spp. in the Cerrado...

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Published inBotanical journal of the Linnean Society Vol. 181; no. 1; pp. 21 - 36
Main Authors Correa Ribeiro, Priciane, Lemos‐Filho, José P., Oliveira Buzatti, Renata S., Lovato, Maria B., Heuertz, Myriam
Format Journal Article
LanguageEnglish
Published Oxford Oxford University Press 01.05.2016
Linnean Society of London
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Abstract The Brazilian Cerrado is the most diverse savanna in the world. Phylogeographical patterns for Cerrado tree species are relatively congruent; however, the causes of these patterns are not clear. Ours aims were to investigate phylogeographical patterns in two co‐distributed Annona spp. in the Cerrado and identify the factors responsible for their genetic structure. We sequenced non‐coding plastid DNA regions and estimated divergence times using a Bayesian Markov chain Monte Carlo method implemented in BEAST. Generalized linear mixed models (GLMMs) were used to relate genetic divergence with spatial, climatic and phytogeographic data. Annona crassiflora possessed only one haplotype, whereas A. coriacea possessed nine haplotypes constituting two groups: western and eastern. Haplotype diversification first occurred in the Pliocene; the split between eastern and western groups was dated to the Early Pleistocene. GLMMs detected a weak association of genetic distance with current climatic factors, represented mainly by precipitation in the warmest months. In A. coriacea, the north of central Cerrado (around Serra Geral de Goiás) is suggested as a putative Pleistocene refugium. The current climate and dispersal and local adaptation processes probably contribute to maintaining the east–west genetic structure in A. coriacea. Both Annona spp. show idiosyncratic population histories, reminiscent of the complex biogeography of the Cerrado.
AbstractList The Brazilian Cerrado is the most diverse savanna in the world. Phylogeographical patterns for Cerrado tree species are relatively congruent; however, the causes of these patterns are not clear. Ours aims were to investigate phylogeographical patterns in two co-distributed Annona spp. in the Cerrado and identify the factors responsible for their genetic structure. We sequenced non-coding plastid DNA regions and estimated divergence times using a Bayesian Markov chain Monte Carlo method implemented in BEAST. Generalized linear mixed models (GLMMs) were used to relate genetic divergence with spatial, climatic and phytogeographic data. Annona crassiflora possessed only one haplotype, whereas A.coriacea possessed nine haplotypes constituting two groups: western and eastern. Haplotype diversification first occurred in the Pliocene; the split between eastern and western groups was dated to the Early Pleistocene. GLMMs detected a weak association of genetic distance with current climatic factors, represented mainly by precipitation in the warmest months. In A.coriacea, the north of central Cerrado (around Serra Geral de Goias) is suggested as a putative Pleistocene refugium. The current climate and dispersal and local adaptation processes probably contribute to maintaining the east-west genetic structure in A.coriacea. Both Annona spp. show idiosyncratic population histories, reminiscent of the complex biogeography of the Cerrado.
The Brazilian Cerrado is the most diverse savanna in the world. Phylogeographical patterns for Cerrado tree species are relatively congruent; however, the causes of these patterns are not clear. Ours aims were to investigate phylogeographical patterns in two co-distributed Annona spp. in the Cerrado and identify the factors responsible for their genetic structure. We sequenced non-coding plastid DNA regions and estimated divergence times using a Bayesian Markov chain Monte Carlo method implemented in BEAST. Generalized linear mixed models (GLMMs) were used to relate genetic divergence with spatial, climatic and phytogeographic data. Annona crassiflora possessed only one haplotype, whereas A. coriacea possessed nine haplotypes constituting two groups: western and eastern. Haplotype diversification first occurred in the Pliocene; the split between eastern and western groups was dated to the Early Pleistocene. GLMMs detected a weak association of genetic distance with current climatic factors, represented mainly by precipitation in the warmest months. In A. coriacea, the north of central Cerrado (around Serra Geral de Goiás) is suggested as a putative Pleistocene refugium. The current climate and dispersal and local adaptation processes probably contribute to maintaining the east-west genetic structure in A. coriacea. Both Annona spp. show idiosyncratic population histories, reminiscent of the complex biogeography of the Cerrado.
The Brazilian Cerrado is the most diverse savanna in the world. Phylogeographical patterns for Cerrado tree species are relatively congruent; however, the causes of these patterns are not clear. Ours aims were to investigate phylogeographical patterns in two co‐distributed Annona spp. in the Cerrado and identify the factors responsible for their genetic structure. We sequenced non‐coding plastid DNA regions and estimated divergence times using a Bayesian Markov chain Monte Carlo method implemented in BEAST. Generalized linear mixed models (GLMMs) were used to relate genetic divergence with spatial, climatic and phytogeographic data. Annona crassiflora possessed only one haplotype, whereas A. coriacea possessed nine haplotypes constituting two groups: western and eastern. Haplotype diversification first occurred in the Pliocene; the split between eastern and western groups was dated to the Early Pleistocene. GLMMs detected a weak association of genetic distance with current climatic factors, represented mainly by precipitation in the warmest months. In A. coriacea, the north of central Cerrado (around Serra Geral de Goiás) is suggested as a putative Pleistocene refugium. The current climate and dispersal and local adaptation processes probably contribute to maintaining the east–west genetic structure in A. coriacea. Both Annona spp. show idiosyncratic population histories, reminiscent of the complex biogeography of the Cerrado.
Author Correa Ribeiro, Priciane
Lovato, Maria B.
Oliveira Buzatti, Renata S.
Lemos‐Filho, José P.
Heuertz, Myriam
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  surname: Lemos‐Filho
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  givenname: Myriam
  surname: Heuertz
  fullname: Heuertz, Myriam
  organization: University of Bordeaux
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Issue 1
Keywords South America
Annona crassiflora
Annona coriacea
quaternary climate changes
biogeography
current climate
Language English
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Snippet The Brazilian Cerrado is the most diverse savanna in the world. Phylogeographical patterns for Cerrado tree species are relatively congruent; however, the...
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SubjectTerms Annona
Annona coriacea
Annona crassiflora
Annonaceae
Biogeography
cerrado
climatic factors
current climate
genetic distance
Genetic structure
genetic variation
Haplotypes
Life Sciences
Markov chain
Markov chains
Monte Carlo method
Monte Carlo simulation
phylogeography
phytogeography
Plant species
plastid DNA
Pleistocene
Pliocene
Quaternary climate changes
savannas
South America
trees
Title Species‐specific phylogeographical patterns and Pleistocene east–west divergence in Annona (Annonaceae) in the Brazilian Cerrado
URI https://onlinelibrary.wiley.com/doi/abs/10.1111%2Fboj.12394
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https://hal.inrae.fr/hal-02639284
Volume 181
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