Functional characterization of PhoPR two component system and its implication in regulating phosphate homeostasis in Bacillus anthracis

Recent report on importance of phosphate starvation (PS) in Bacillus anthracis (BA) pathogenesis warrants further investigation of the underlying regulatory mechanism. Potential role of PhoPR two component system (TCS) in phosphate homeostasis and virulence of several pathogens necessitates the stud...

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Published inBiochimica et biophysica acta. General subjects Vol. 1861; no. 1; pp. 2956 - 2970
Main Authors Aggarwal, Somya, Somani, Vikas Kumar, Gupta, Vatika, Kaur, Jaspreet, Singh, Damini, Grover, Abhinav, Bhatnagar, Rakesh
Format Journal Article
LanguageEnglish
Published Netherlands Elsevier B.V 01.01.2017
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Abstract Recent report on importance of phosphate starvation (PS) in Bacillus anthracis (BA) pathogenesis warrants further investigation of the underlying regulatory mechanism. Potential role of PhoPR two component system (TCS) in phosphate homeostasis and virulence of several pathogens necessitates the study of annotated PhoPR in BA. Expression of phoP and phoR was analyzed using qRT-PCR. PhoPR was characterized biochemically. DNA-protein interaction was analyzed by EMSA. Docking was done to predict PhoPR interacting residues with further validation by mutational studies. pHCMC05 was used to overexpress PhoP in BA. In silico analysis revealed Bas4483-4484, as putative PhoR–PhoP. Their expression was decreased with increasing phosphate concentration reflecting some role in PS. Both PhoP (response regulator) and PhoR (histidine kinase) showed characteristic property of TCS i.e., autophosphorylation and phosphotransfer. PhoR showed both kinase and phosphatase activity. PhoP bound with promoter of PS marker genes. In silico and in vitro analysis revealed role of PhoRH370 and PhoPD10, PhoPD53, PhoPM55 in PhoPR interaction. Challenge studies showed decreased survival of mice infected with BApHCMC05-PhoP. This study affirms that PhoPR forms functional TCS which is upregulated under PS. PhoP binding with promoter of PS marker genes indicates its possible role in regulating PS response. Low survival of mice infected with BApHCMC05-PhoP suggests its role in BA virulence. Considering the significance of PS in BA infection, possible role of PhoPR in its regulation and exclusive presence of TCS in prokaryotes, PhoP can be proposed as potential drug target against anthrax. [Display omitted] •Phosphate starvation (PS) promotes pathogenesis of B. anthracis (BA) within host.•PhoP and PhoR of BA form a functional two component system, regulating PS response.•PhoP is implicated in regulation of PS marker genes.•H370 of PhoR and D10, D53 and M55 of PhoP are involved in PhoPR interaction.•Exclusive in microbes, homology in pathogens, role in virulence & PS make PhoP as a good drug target.
AbstractList Recent report on importance of phosphate starvation (PS) in Bacillus anthracis (BA) pathogenesis warrants further investigation of the underlying regulatory mechanism. Potential role of PhoPR two component system (TCS) in phosphate homeostasis and virulence of several pathogens necessitates the study of annotated PhoPR in BA. Expression of phoP and phoR was analyzed using qRT-PCR. PhoPR was characterized biochemically. DNA-protein interaction was analyzed by EMSA. Docking was done to predict PhoPR interacting residues with further validation by mutational studies. pHCMC05 was used to overexpress PhoP in BA. In silico analysis revealed Bas4483-4484, as putative PhoR-PhoP. Their expression was decreased with increasing phosphate concentration reflecting some role in PS. Both PhoP (response regulator) and PhoR (histidine kinase) showed characteristic property of TCS i.e., autophosphorylation and phosphotransfer. PhoR showed both kinase and phosphatase activity. PhoP bound with promoter of PS marker genes. In silico and in vitro analysis revealed role of PhoR and PhoP , PhoP , PhoP in PhoPR interaction. Challenge studies showed decreased survival of mice infected with BA . This study affirms that PhoPR forms functional TCS which is upregulated under PS. PhoP binding with promoter of PS marker genes indicates its possible role in regulating PS response. Low survival of mice infected with BA suggests its role in BA virulence. Considering the significance of PS in BA infection, possible role of PhoPR in its regulation and exclusive presence of TCS in prokaryotes, PhoP can be proposed as potential drug target against anthrax.
Recent report on importance of phosphate starvation (PS) in Bacillus anthracis (BA) pathogenesis warrants further investigation of the underlying regulatory mechanism. Potential role of PhoPR two component system (TCS) in phosphate homeostasis and virulence of several pathogens necessitates the study of annotated PhoPR in BA.BACKGROUNDRecent report on importance of phosphate starvation (PS) in Bacillus anthracis (BA) pathogenesis warrants further investigation of the underlying regulatory mechanism. Potential role of PhoPR two component system (TCS) in phosphate homeostasis and virulence of several pathogens necessitates the study of annotated PhoPR in BA.Expression of phoP and phoR was analyzed using qRT-PCR. PhoPR was characterized biochemically. DNA-protein interaction was analyzed by EMSA. Docking was done to predict PhoPR interacting residues with further validation by mutational studies. pHCMC05 was used to overexpress PhoP in BA.METHODSExpression of phoP and phoR was analyzed using qRT-PCR. PhoPR was characterized biochemically. DNA-protein interaction was analyzed by EMSA. Docking was done to predict PhoPR interacting residues with further validation by mutational studies. pHCMC05 was used to overexpress PhoP in BA.In silico analysis revealed Bas4483-4484, as putative PhoR-PhoP. Their expression was decreased with increasing phosphate concentration reflecting some role in PS. Both PhoP (response regulator) and PhoR (histidine kinase) showed characteristic property of TCS i.e., autophosphorylation and phosphotransfer. PhoR showed both kinase and phosphatase activity. PhoP bound with promoter of PS marker genes. In silico and in vitro analysis revealed role of PhoRH370 and PhoPD10, PhoPD53, PhoPM55 in PhoPR interaction. Challenge studies showed decreased survival of mice infected with BApHCMC05-PhoP.RESULTSIn silico analysis revealed Bas4483-4484, as putative PhoR-PhoP. Their expression was decreased with increasing phosphate concentration reflecting some role in PS. Both PhoP (response regulator) and PhoR (histidine kinase) showed characteristic property of TCS i.e., autophosphorylation and phosphotransfer. PhoR showed both kinase and phosphatase activity. PhoP bound with promoter of PS marker genes. In silico and in vitro analysis revealed role of PhoRH370 and PhoPD10, PhoPD53, PhoPM55 in PhoPR interaction. Challenge studies showed decreased survival of mice infected with BApHCMC05-PhoP.This study affirms that PhoPR forms functional TCS which is upregulated under PS. PhoP binding with promoter of PS marker genes indicates its possible role in regulating PS response. Low survival of mice infected with BApHCMC05-PhoP suggests its role in BA virulence.CONCLUSIONThis study affirms that PhoPR forms functional TCS which is upregulated under PS. PhoP binding with promoter of PS marker genes indicates its possible role in regulating PS response. Low survival of mice infected with BApHCMC05-PhoP suggests its role in BA virulence.Considering the significance of PS in BA infection, possible role of PhoPR in its regulation and exclusive presence of TCS in prokaryotes, PhoP can be proposed as potential drug target against anthrax.GENERAL SIGNIFICANCEConsidering the significance of PS in BA infection, possible role of PhoPR in its regulation and exclusive presence of TCS in prokaryotes, PhoP can be proposed as potential drug target against anthrax.
Recent report on importance of phosphate starvation (PS) in Bacillus anthracis (BA) pathogenesis warrants further investigation of the underlying regulatory mechanism. Potential role of PhoPR two component system (TCS) in phosphate homeostasis and virulence of several pathogens necessitates the study of annotated PhoPR in BA.Expression of phoP and phoR was analyzed using qRT-PCR. PhoPR was characterized biochemically. DNA-protein interaction was analyzed by EMSA. Docking was done to predict PhoPR interacting residues with further validation by mutational studies. pHCMC05 was used to overexpress PhoP in BA.In silico analysis revealed Bas4483-4484, as putative PhoR–PhoP. Their expression was decreased with increasing phosphate concentration reflecting some role in PS. Both PhoP (response regulator) and PhoR (histidine kinase) showed characteristic property of TCS i.e., autophosphorylation and phosphotransfer. PhoR showed both kinase and phosphatase activity. PhoP bound with promoter of PS marker genes. In silico and in vitro analysis revealed role of PhoRH370 and PhoPD10, PhoPD53, PhoPM55 in PhoPR interaction. Challenge studies showed decreased survival of mice infected with BApHCMC05-PhoP.This study affirms that PhoPR forms functional TCS which is upregulated under PS. PhoP binding with promoter of PS marker genes indicates its possible role in regulating PS response. Low survival of mice infected with BApHCMC05-PhoP suggests its role in BA virulence.Considering the significance of PS in BA infection, possible role of PhoPR in its regulation and exclusive presence of TCS in prokaryotes, PhoP can be proposed as potential drug target against anthrax.
Recent report on importance of phosphate starvation (PS) in Bacillus anthracis (BA) pathogenesis warrants further investigation of the underlying regulatory mechanism. Potential role of PhoPR two component system (TCS) in phosphate homeostasis and virulence of several pathogens necessitates the study of annotated PhoPR in BA. Expression of phoP and phoR was analyzed using qRT-PCR. PhoPR was characterized biochemically. DNA-protein interaction was analyzed by EMSA. Docking was done to predict PhoPR interacting residues with further validation by mutational studies. pHCMC05 was used to overexpress PhoP in BA. In silico analysis revealed Bas4483-4484, as putative PhoR–PhoP. Their expression was decreased with increasing phosphate concentration reflecting some role in PS. Both PhoP (response regulator) and PhoR (histidine kinase) showed characteristic property of TCS i.e., autophosphorylation and phosphotransfer. PhoR showed both kinase and phosphatase activity. PhoP bound with promoter of PS marker genes. In silico and in vitro analysis revealed role of PhoRH370 and PhoPD10, PhoPD53, PhoPM55 in PhoPR interaction. Challenge studies showed decreased survival of mice infected with BApHCMC05-PhoP. This study affirms that PhoPR forms functional TCS which is upregulated under PS. PhoP binding with promoter of PS marker genes indicates its possible role in regulating PS response. Low survival of mice infected with BApHCMC05-PhoP suggests its role in BA virulence. Considering the significance of PS in BA infection, possible role of PhoPR in its regulation and exclusive presence of TCS in prokaryotes, PhoP can be proposed as potential drug target against anthrax. [Display omitted] •Phosphate starvation (PS) promotes pathogenesis of B. anthracis (BA) within host.•PhoP and PhoR of BA form a functional two component system, regulating PS response.•PhoP is implicated in regulation of PS marker genes.•H370 of PhoR and D10, D53 and M55 of PhoP are involved in PhoPR interaction.•Exclusive in microbes, homology in pathogens, role in virulence & PS make PhoP as a good drug target.
Author Somani, Vikas Kumar
Aggarwal, Somya
Bhatnagar, Rakesh
Singh, Damini
Kaur, Jaspreet
Grover, Abhinav
Gupta, Vatika
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  surname: Bhatnagar
  fullname: Bhatnagar, Rakesh
  email: rakeshbhatnagar@jnu.ac.in
  organization: Molecular Biology and Genetic Engineering Laboratory, School of Biotechnology, Jawaharlal Nehru University, New Delhi, India
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Cites_doi 10.1128/IAI.73.1.88-102.2005
10.1016/j.ijmm.2015.06.001
10.1021/ci200227u
10.1016/j.mam.2009.08.001
10.1186/1471-2180-5-35
10.1021/ja00214a001
10.1016/j.jmb.2010.02.031
10.1128/IAI.70.4.1991-1996.2002
10.1016/j.fob.2013.12.005
10.1038/nprot.2010.32
10.1016/j.bbrc.2015.02.159
10.1128/jb.176.5.1348-1358.1994
10.1046/j.1365-2958.2000.01725.x
10.1016/S0022-2836(05)80360-2
10.1111/j.1747-0285.2012.01362.x
10.1021/jp003919d
10.1186/s12864-015-1962-x
10.1073/pnas.95.11.5857
10.1086/605700
10.1371/journal.pone.0074444
10.1128/JB.00574-08
10.1128/jb.179.20.6302-6310.1997
10.1074/jbc.M109.073387
10.1586/14760584.2013.814860
10.1111/j.1365-2958.2011.07829.x
10.1074/mcp.M111.013797
10.1073/pnas.0931429100
10.1128/JVI.56.2.558-570.1985
10.1111/j.1574-6968.2001.tb10872.x
10.1002/jcb.240510110
10.1371/journal.pbio.1000306
10.1016/j.cell.2009.08.032
10.1371/journal.pcbi.0020143
10.1002/elps.1150181505
10.1111/j.1747-0285.2010.00951.x
10.1016/j.vetmic.2011.05.043
10.1021/ja9621760
10.1046/j.1365-2958.2003.03313.x
10.1073/pnas.89.2.718
10.1046/j.1365-2958.1998.01122.x
10.1111/j.1365-2958.2012.08036.x
10.1021/ct900587b
10.1146/annurev.biochem.69.1.183
10.3389/fmicb.2016.00169
10.1038/msb.2011.75
10.1006/jmbi.1993.1626
10.1021/bi034883t
10.1016/j.mib.2010.01.004
10.1046/j.1432-1033.2002.02755.x
10.1023/A:1020547616096
10.1099/mic.0.28021-0
10.1111/j.1574-6968.2001.tb10814.x
10.1093/nar/gks766
10.1016/0966-842X(93)90007-E
10.1073/pnas.95.13.7825
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Issue 1
Keywords RR
Bacillus anthracis
PhoPR
HK
PS
TCS
HRP
Response regulator
AcP
AP
Histidine kinase
EMSA
Phosphate starvation
Two component system
MBP
MSA
ELISA
Language English
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References Wanner (bb0055) 1993; 51
Hatfull, Jacobs (bb0230) 2000
Birkey, Liu, Zhang, Duggan, Hulett (bb0065) 1998; 30
Galperin (bb0040) 2005; 5
Khan, Levitt, Sage (bb0020) 2000; 49
Stock, Robinson, Goudreau (bb0035) 2000; 69
Chopra, Meena, Singh (bb0310) 2003; 117
Altschul, Gish, Miller, Myers, Lipman (bb0125) 1990; 215
Shivakumar, Williams, Wu, Damm, Shelley, Sherman (bb0140) 2010; 6
Minnig, Lazarevic, Soldo, Mauël (bb0070) 2005; 151
Dhiman, Bhatnagar, Kulshreshtha, Bhatnagar (bb0210) 2014; 4
Crépin, Chekabab, Le Bihan, Bertrand, Dozois, Harel (bb0300) 2011; 153
Zwir, Latifi, Perez, Huang, Groisman (bb0225) 2012; 84
Silversmith (bb0270) 2010; 13
Rifat, Bishai, Karakousis (bb0005) 2009; 200
Aggarwal, Somani, Bhatnagar (bb0030) 2015
Lucchini, Liu, Jin, Hinton, Yu (bb0015) 2005; 73
Tang, Gao, Havranek, Groisman, Stock, Marshall (bb0305) 2012; 79
Guex, Peitsch (bb0135) 1997; 18
Borland, Oudart, Prigent-Combaret, Brochier-Armanet, Wisniewski-Dyé (bb0260) 2015; 16
Kallipolitis, Ingmer (bb0090) 2001; 204
Lukat, McCleary, Stock, Stock (bb0285) 1992; 89
Wanner (bb0060) 1996
Georrge, Umrania (bb0315) 2011; 10
Sievers, Wilm, Dineen, Gibson, Karplus, Li, Lopez, McWilliam, Remmert, Söding (bb0120) 2011; 7
Laskowski, Swindells (bb0180) 2011; 51
Šali, Blundell (bb0130) 1993; 234
Schultz, Milpetz, Bork, Ponting (bb0115) 1998; 95
Guo, Mohanty, Noehre, Sawyer, Sherman, Krilov (bb0145) 2010; 75
Fiedler, Mix, Meyer, Mikkat, Glocker, Bahl, Fischer (bb0255) 2008; 190
Huynh, Stewart (bb0275) 2011; 82
Dunin-Horkawicz, Lupas (bb0190) 2010; 397
Sola-Landa, Moura, Martin (bb0250) 2003; 100
Allenby, Laing, Bucca, Kierzek, Smith (bb0240) 2012
Liu, Hulett (bb0110) 1997; 179
Casino, Rubio, Marina (bb0235) 2009; 139
Vershinina, Znamenskaya (bb0290) 2002; 71
Throup, Koretke, Bryant, Ingraham, Chalker, Ge, Marra, Wallis, Brown, Holmes (bb0085) 2000; 35
Gamble, Coonfield, Schaller (bb0265) 1998; 95
Thomas, Hodgson, Wentzel, Nieselt, Ellingsen, Moore, Morrissey, Legaie, Wohlleben, Rodríguez-García (bb0075) 2012; 11
Dhiman, Gopalani, Bhatnagar (bb0185) 2015; 459
DeLuca, McCARTHY, Schaffer (bb0215) 1985; 56
Hulett, Lee, Shi, Sun, Chesnut, Sharkova, Duggan, Kapp (bb0245) 1994; 176
Alm, Huang, Arkin (bb0045) 2006; 2
Jorgensen, Tirado-Rives (bb0165) 1988; 110
Jorgensen, Maxwell, Tirado-Rives (bb0160) 1996; 118
Horiuchi, Horiuchi, Mizuno (bb0295) 1959
Wolanin, Webre, Stock (bb0205) 2003; 42
Galperin, Nikolskaya, Koonin (bb0050) 2001; 203
Bowers, Chow, Xu, Dror, Eastwood, Gregersen, Klepeis, Kolossvary, Moraes, Sacerdoti (bb0150) 2006
Blus-Kadosh, Zilka, Yerushalmi, Banin (bb0080) 2013; 8
Kaminski, Friesner, Tirado-Rives, Jorgensen (bb0170) 2001; 105
Eriksson, Lucchini, Thompson, Rhen, Hinton (bb0010) 2003; 47
Russo, Silhavy (bb0280) 1993; 1
Bell, Porter, Strawson, Stuart, Armitage (bb0195) 2010; 8
Teng, Wang, Singh, Murray, Weinstock (bb0095) 2002; 70
Kaur, Singh, Bhatnagar (bb0155) 2013; 12
Agarwal, Mishra, Bhatnagar, Bhatnagar (bb0105) 2010; 285
Somani, Aggarwal, Singh, Prasad, Bhatnagar (bb0100) 2016; 7
Zhao, Collins, Bourret, Silversmith (bb0200) 2002; 9
Klumpp, Krieglstein (bb0220) 2002; 269
de Vries, van Dijk, Bonvin (bb0175) 2010; 5
Driks (bb0025) 2009; 30
Huynh (10.1016/j.bbagen.2016.09.022_bb0275) 2011; 82
Eriksson (10.1016/j.bbagen.2016.09.022_bb0010) 2003; 47
Minnig (10.1016/j.bbagen.2016.09.022_bb0070) 2005; 151
Khan (10.1016/j.bbagen.2016.09.022_bb0020) 2000; 49
Altschul (10.1016/j.bbagen.2016.09.022_bb0125) 1990; 215
Blus-Kadosh (10.1016/j.bbagen.2016.09.022_bb0080) 2013; 8
Liu (10.1016/j.bbagen.2016.09.022_bb0110) 1997; 179
Agarwal (10.1016/j.bbagen.2016.09.022_bb0105) 2010; 285
Birkey (10.1016/j.bbagen.2016.09.022_bb0065) 1998; 30
Guex (10.1016/j.bbagen.2016.09.022_bb0135) 1997; 18
Laskowski (10.1016/j.bbagen.2016.09.022_bb0180) 2011; 51
Thomas (10.1016/j.bbagen.2016.09.022_bb0075) 2012; 11
Rifat (10.1016/j.bbagen.2016.09.022_bb0005) 2009; 200
Sola-Landa (10.1016/j.bbagen.2016.09.022_bb0250) 2003; 100
Hulett (10.1016/j.bbagen.2016.09.022_bb0245) 1994; 176
Schultz (10.1016/j.bbagen.2016.09.022_bb0115) 1998; 95
Zwir (10.1016/j.bbagen.2016.09.022_bb0225) 2012; 84
Vershinina (10.1016/j.bbagen.2016.09.022_bb0290) 2002; 71
Chopra (10.1016/j.bbagen.2016.09.022_bb0310) 2003; 117
Shivakumar (10.1016/j.bbagen.2016.09.022_bb0140) 2010; 6
Guo (10.1016/j.bbagen.2016.09.022_bb0145) 2010; 75
Horiuchi (10.1016/j.bbagen.2016.09.022_bb0295) 1959
Stock (10.1016/j.bbagen.2016.09.022_bb0035) 2000; 69
Bell (10.1016/j.bbagen.2016.09.022_bb0195) 2010; 8
Russo (10.1016/j.bbagen.2016.09.022_bb0280) 1993; 1
Kaminski (10.1016/j.bbagen.2016.09.022_bb0170) 2001; 105
Georrge (10.1016/j.bbagen.2016.09.022_bb0315) 2011; 10
Teng (10.1016/j.bbagen.2016.09.022_bb0095) 2002; 70
Galperin (10.1016/j.bbagen.2016.09.022_bb0040) 2005; 5
Lukat (10.1016/j.bbagen.2016.09.022_bb0285) 1992; 89
Fiedler (10.1016/j.bbagen.2016.09.022_bb0255) 2008; 190
DeLuca (10.1016/j.bbagen.2016.09.022_bb0215) 1985; 56
Bowers (10.1016/j.bbagen.2016.09.022_bb0150) 2006
Tang (10.1016/j.bbagen.2016.09.022_bb0305) 2012; 79
Somani (10.1016/j.bbagen.2016.09.022_bb0100) 2016; 7
Kallipolitis (10.1016/j.bbagen.2016.09.022_bb0090) 2001; 204
Dhiman (10.1016/j.bbagen.2016.09.022_bb0210) 2014; 4
Throup (10.1016/j.bbagen.2016.09.022_bb0085) 2000; 35
Allenby (10.1016/j.bbagen.2016.09.022_bb0240) 2012
Galperin (10.1016/j.bbagen.2016.09.022_bb0050) 2001; 203
Alm (10.1016/j.bbagen.2016.09.022_bb0045) 2006; 2
Borland (10.1016/j.bbagen.2016.09.022_bb0260) 2015; 16
Jorgensen (10.1016/j.bbagen.2016.09.022_bb0165) 1988; 110
Gamble (10.1016/j.bbagen.2016.09.022_bb0265) 1998; 95
de Vries (10.1016/j.bbagen.2016.09.022_bb0175) 2010; 5
Dunin-Horkawicz (10.1016/j.bbagen.2016.09.022_bb0190) 2010; 397
Hatfull (10.1016/j.bbagen.2016.09.022_bb0230) 2000
Kaur (10.1016/j.bbagen.2016.09.022_bb0155) 2013; 12
Jorgensen (10.1016/j.bbagen.2016.09.022_bb0160) 1996; 118
Klumpp (10.1016/j.bbagen.2016.09.022_bb0220) 2002; 269
Crépin (10.1016/j.bbagen.2016.09.022_bb0300) 2011; 153
Casino (10.1016/j.bbagen.2016.09.022_bb0235) 2009; 139
Driks (10.1016/j.bbagen.2016.09.022_bb0025) 2009; 30
Sievers (10.1016/j.bbagen.2016.09.022_bb0120) 2011; 7
Šali (10.1016/j.bbagen.2016.09.022_bb0130) 1993; 234
Silversmith (10.1016/j.bbagen.2016.09.022_bb0270) 2010; 13
Wanner (10.1016/j.bbagen.2016.09.022_bb0055) 1993; 51
Zhao (10.1016/j.bbagen.2016.09.022_bb0200) 2002; 9
Dhiman (10.1016/j.bbagen.2016.09.022_bb0185) 2015; 459
Lucchini (10.1016/j.bbagen.2016.09.022_bb0015) 2005; 73
Aggarwal (10.1016/j.bbagen.2016.09.022_bb0030) 2015
Wolanin (10.1016/j.bbagen.2016.09.022_bb0205) 2003; 42
Wanner (10.1016/j.bbagen.2016.09.022_bb0060) 1996
References_xml – volume: 6
  start-page: 1509
  year: 2010
  end-page: 1519
  ident: bb0140
  article-title: Prediction of absolute solvation free energies using molecular dynamics free energy perturbation and the OPLS force field
  publication-title: J. Chem. Theory Comput.
– volume: 73
  start-page: 88
  year: 2005
  end-page: 102
  ident: bb0015
  article-title: Transcriptional adaptation of
  publication-title: Infect. Immun.
– volume: 7
  year: 2016
  ident: bb0100
  article-title: Identification of novel raft marker protein, FlotP in
  publication-title: Front. Microbiol.
– volume: 51
  start-page: 2778
  year: 2011
  end-page: 2786
  ident: bb0180
  article-title: LigPlot
  publication-title: J. Chem. Inf. Model.
– volume: 139
  start-page: 325
  year: 2009
  end-page: 336
  ident: bb0235
  article-title: Structural insight into partner specificity and phosphoryl transfer in two-component signal transduction
  publication-title: Cell
– volume: 118
  start-page: 11225
  year: 1996
  end-page: 11236
  ident: bb0160
  article-title: Development and testing of the OPLS all-atom force field on conformational energetics and properties of organic liquids
  publication-title: J. Am. Chem. Soc.
– volume: 110
  start-page: 1657
  year: 1988
  end-page: 1666
  ident: bb0165
  article-title: The OPLS [optimized potentials for liquid simulations] potential functions for proteins, energy minimizations for crystals of cyclic peptides and crambin
  publication-title: J. Am. Chem. Soc.
– start-page: 1357
  year: 1996
  end-page: 1381
  ident: bb0060
  article-title: Phosphorus Assimilation and Control of the Phosphate Regulon,
– volume: 105
  start-page: 6474
  year: 2001
  end-page: 6487
  ident: bb0170
  article-title: Evaluation and reparametrization of the OPLS-AA force field for proteins via comparison with accurate quantum chemical calculations on peptides†
  publication-title: J. Phys. Chem. B
– volume: 42
  start-page: 14075
  year: 2003
  end-page: 14082
  ident: bb0205
  article-title: Mechanism of phosphatase activity in the chemotaxis response regulator CheY
  publication-title: Biochemistry
– volume: 7
  start-page: 539
  year: 2011
  ident: bb0120
  article-title: Fast, scalable generation of high-quality protein multiple sequence alignments using Clustal Omega
  publication-title: Mol. Syst. Biol.
– volume: 269
  start-page: 1067
  year: 2002
  end-page: 1071
  ident: bb0220
  article-title: Phosphorylation and dephosphorylation of histidine residues in proteins
  publication-title: Eur. J. Biochem.
– volume: 69
  start-page: 183
  year: 2000
  end-page: 215
  ident: bb0035
  article-title: Two-component signal transduction
  publication-title: Annu. Rev. Biochem.
– volume: 397
  start-page: 1156
  year: 2010
  end-page: 1174
  ident: bb0190
  article-title: Comprehensive analysis of HAMP domains: implications for transmembrane signal transduction
  publication-title: J. Mol. Biol.
– volume: 176
  start-page: 1348
  year: 1994
  end-page: 1358
  ident: bb0245
  article-title: Sequential action of two-component genetic switches regulates the PHO regulon in
  publication-title: J. Bacteriol.
– volume: 16
  start-page: 833
  year: 2015
  ident: bb0260
  article-title: Genome-wide survey of two-component signal transduction systems in the plant growth-promoting bacterium Azospirillum
  publication-title: BMC Genomics
– volume: 12
  start-page: 955
  year: 2013
  end-page: 970
  ident: bb0155
  article-title: Anthrax vaccines: present status and future prospects
  publication-title: Expert Rev. Vaccines
– volume: 234
  start-page: 779
  year: 1993
  end-page: 815
  ident: bb0130
  article-title: Comparative protein modelling by satisfaction of spatial restraints
  publication-title: J. Mol. Biol.
– year: 2015
  ident: bb0030
  article-title: Phosphate starvation enhances the pathogenesis of
  publication-title: Int. J. Med. Microbiol.
– year: 1959
  ident: bb0295
  article-title: A Possible Negative Feedback Phenomenon Controlling Formation of Alkaline Phosphomonoesterase in
– volume: 82
  start-page: 275
  year: 2011
  end-page: 286
  ident: bb0275
  article-title: Negative control in two-component signal transduction by transmitter phosphatase activity
  publication-title: Mol. Microbiol.
– volume: 11
  year: 2012
  ident: bb0075
  article-title: Metabolic switches and adaptations deduced from the proteomes of
  publication-title: Mol. Cell Proteomics
– volume: 2
  start-page: e143
  year: 2006
  ident: bb0045
  article-title: The evolution of two-component systems in bacteria reveals different strategies for niche adaptation
  publication-title: PLoS Comput. Biol.
– volume: 30
  start-page: 943
  year: 1998
  end-page: 953
  ident: bb0065
  article-title: Pho signal transduction network reveals direct transcriptional regulation of one two-component system by another two-component regulator:
  publication-title: Mol. Microbiol.
– volume: 70
  start-page: 1991
  year: 2002
  end-page: 1996
  ident: bb0095
  article-title: Involvement of PhoP-PhoS homologs in
  publication-title: Infect. Immun.
– volume: 89
  start-page: 718
  year: 1992
  end-page: 722
  ident: bb0285
  article-title: Phosphorylation of bacterial response regulator proteins by low molecular weight phospho-donors
  publication-title: Proc. Natl. Acad. Sci.
– year: 2012
  ident: bb0240
  article-title: Diverse control of metabolism and other cellular processes in
  publication-title: Nucleic Acids Res.
– volume: 9
  start-page: 570
  year: 2002
  end-page: 575
  ident: bb0200
  article-title: Structure and catalytic mechanism of the
  publication-title: Nat. Struct. Mol. Biol.
– volume: 13
  start-page: 177
  year: 2010
  end-page: 183
  ident: bb0270
  article-title: Auxiliary phosphatases in two-component signal transduction
  publication-title: Curr. Opin. Microbiol.
– volume: 79
  start-page: 1007
  year: 2012
  end-page: 1017
  ident: bb0305
  article-title: Inhibition of bacterial virulence: drug-like molecules targeting the
  publication-title: Chem. Biol. Drug Des.
– volume: 285
  start-page: 7254
  year: 2010
  end-page: 7270
  ident: bb0105
  article-title: PemK toxin of
  publication-title: J. Biol. Chem.
– volume: 459
  start-page: 623
  year: 2015
  end-page: 628
  ident: bb0185
  article-title: WalRK two component system of
  publication-title: Biochem. Biophys. Res. Commun.
– volume: 204
  start-page: 111
  year: 2001
  end-page: 115
  ident: bb0090
  article-title: response regulators important for stress tolerance and pathogenesis
  publication-title: FEMS Microbiol. Lett.
– year: 2000
  ident: bb0230
  article-title: Molecular Genetics of Mycobacteria, American Society for Microbiology (ASM)
– volume: 35
  start-page: 566
  year: 2000
  end-page: 576
  ident: bb0085
  article-title: A genomic analysis of two-component signal transduction in
  publication-title: Mol. Microbiol.
– volume: 75
  start-page: 348
  year: 2010
  end-page: 359
  ident: bb0145
  article-title: Probing the α-helical structural stability of stapled p53 peptides: molecular dynamics simulations and analysis
  publication-title: Chem. Biol. Drug Des.
– volume: 1
  start-page: 306
  year: 1993
  end-page: 310
  ident: bb0280
  article-title: The essential tension: opposed reactions in bacterial two-component regulatory systems
  publication-title: Trends Microbiol.
– volume: 47
  start-page: 103
  year: 2003
  end-page: 118
  ident: bb0010
  article-title: Unravelling the biology of macrophage infection by gene expression profiling of intracellular
  publication-title: Mol. Microbiol.
– start-page: 43
  year: 2006
  ident: bb0150
  article-title: Scalable algorithms for molecular dynamics simulations on commodity clusters
  publication-title: SC 2006 Conference, Proceedings of the ACM/IEEE, IEEE
– volume: 95
  start-page: 5857
  year: 1998
  end-page: 5864
  ident: bb0115
  article-title: SMART, a simple modular architecture research tool: identification of signaling domains
  publication-title: Proc. Natl. Acad. Sci.
– volume: 8
  start-page: e74444
  year: 2013
  ident: bb0080
  article-title: The effect of pstS and phoB on quorum sensing and swarming motility in
  publication-title: PLoS One
– volume: 4
  start-page: 65
  year: 2014
  end-page: 76
  ident: bb0210
  article-title: Functional characterization of WalRK: a two-component signal transduction system from
  publication-title: FEBS Open Bio
– volume: 100
  start-page: 6133
  year: 2003
  end-page: 6138
  ident: bb0250
  article-title: The two-component PhoR-PhoP system controls both primary metabolism and secondary metabolite biosynthesis in
  publication-title: Proc. Natl. Acad. Sci.
– volume: 8
  start-page: 471
  year: 2010
  ident: bb0195
  article-title: Using structural information to change the phosphotransfer specificity of a two-component chemotaxis signalling complex
  publication-title: PLoS Biol.
– volume: 30
  start-page: 368
  year: 2009
  end-page: 373
  ident: bb0025
  article-title: The
  publication-title: Mol. Asp. Med.
– volume: 203
  start-page: 11
  year: 2001
  end-page: 21
  ident: bb0050
  article-title: Novel domains of the prokaryotic two-component signal transduction systems
  publication-title: FEMS Microbiol. Lett.
– volume: 215
  start-page: 403
  year: 1990
  end-page: 410
  ident: bb0125
  article-title: Basic local alignment search tool
  publication-title: J. Mol. Biol.
– volume: 200
  start-page: 1126
  year: 2009
  end-page: 1135
  ident: bb0005
  article-title: Phosphate depletion: a novel trigger for
  publication-title: J. Infect. Dis.
– volume: 5
  start-page: 35
  year: 2005
  ident: bb0040
  article-title: A census of membrane-bound and intracellular signal transduction proteins in bacteria: bacterial IQ, extroverts and introverts
  publication-title: BMC Microbiol.
– volume: 18
  start-page: 2714
  year: 1997
  end-page: 2723
  ident: bb0135
  article-title: SWISS-MODEL and the Swiss-PdbViewer: an environment for comparative protein modeling
  publication-title: Electrophoresis
– volume: 71
  start-page: 497
  year: 2002
  end-page: 511
  ident: bb0290
  article-title: The Pho regulons of bacteria
  publication-title: Microbiology
– volume: 10
  start-page: 432
  year: 2011
  end-page: 439
  ident: bb0315
  article-title: In silico identification of putative drug targets in
  publication-title: Indian J. Biotechnol.
– volume: 117
  start-page: 1
  year: 2003
  end-page: 9
  ident: bb0310
  article-title: New drug targets for
  publication-title: Indian J. Med. Res.
– volume: 179
  start-page: 6302
  year: 1997
  end-page: 6310
  ident: bb0110
  article-title: PhoP binds to the phoB tandem promoter exclusively within the phosphate starvation-inducible promoter
  publication-title: J. Bacteriol.
– volume: 84
  start-page: 463
  year: 2012
  end-page: 485
  ident: bb0225
  article-title: The promoter architectural landscape of the Salmonella PhoP regulon
  publication-title: Mol. Microbiol.
– volume: 51
  start-page: 47
  year: 1993
  end-page: 54
  ident: bb0055
  article-title: Gene regulation by phosphate in enteric bacteria
  publication-title: J. Cell. Biochem.
– volume: 49
  start-page: 1
  year: 2000
  end-page: 14
  ident: bb0020
  article-title: Biological and chemical terrorism: strategic plan for preparedness and response. Recommendations of the CDC strategic planning workgroup
  publication-title: MMWR Recomm. Rep.
– volume: 5
  start-page: 883
  year: 2010
  end-page: 897
  ident: bb0175
  article-title: The HADDOCK web server for data-driven biomolecular docking
  publication-title: Nat. Protoc.
– volume: 95
  start-page: 7825
  year: 1998
  end-page: 7829
  ident: bb0265
  article-title: Histidine kinase activity of the ETR1 ethylene receptor from Arabidopsis
  publication-title: Proc. Natl. Acad. Sci.
– volume: 151
  start-page: 3041
  year: 2005
  end-page: 3049
  ident: bb0070
  article-title: Analysis of teichoic acid biosynthesis regulation reveals that the extracytoplasmic function sigma factor σM is induced by phosphate depletion in
  publication-title: Microbiology
– volume: 153
  start-page: 82
  year: 2011
  end-page: 88
  ident: bb0300
  article-title: The Pho regulon and the pathogenesis of
  publication-title: Vet. Microbiol.
– volume: 56
  start-page: 558
  year: 1985
  end-page: 570
  ident: bb0215
  article-title: Isolation and characterization of deletion mutants of herpes simplex virus type 1 in the gene encoding immediate-early regulatory protein ICP4
  publication-title: J. Virol.
– volume: 190
  start-page: 6559
  year: 2008
  end-page: 6567
  ident: bb0255
  article-title: The two-component system PhoPR of
  publication-title: J. Bacteriol.
– volume: 73
  start-page: 88
  year: 2005
  ident: 10.1016/j.bbagen.2016.09.022_bb0015
  article-title: Transcriptional adaptation of Shigella flexneri during infection of macrophages and epithelial cells: insights into the strategies of a cytosolic bacterial pathogen
  publication-title: Infect. Immun.
  doi: 10.1128/IAI.73.1.88-102.2005
– year: 2015
  ident: 10.1016/j.bbagen.2016.09.022_bb0030
  article-title: Phosphate starvation enhances the pathogenesis of Bacillus anthracis
  publication-title: Int. J. Med. Microbiol.
  doi: 10.1016/j.ijmm.2015.06.001
– volume: 51
  start-page: 2778
  year: 2011
  ident: 10.1016/j.bbagen.2016.09.022_bb0180
  article-title: LigPlot+: multiple ligand-protein interaction diagrams for drug discovery
  publication-title: J. Chem. Inf. Model.
  doi: 10.1021/ci200227u
– volume: 30
  start-page: 368
  year: 2009
  ident: 10.1016/j.bbagen.2016.09.022_bb0025
  article-title: The Bacillus anthracis spore
  publication-title: Mol. Asp. Med.
  doi: 10.1016/j.mam.2009.08.001
– volume: 5
  start-page: 35
  year: 2005
  ident: 10.1016/j.bbagen.2016.09.022_bb0040
  article-title: A census of membrane-bound and intracellular signal transduction proteins in bacteria: bacterial IQ, extroverts and introverts
  publication-title: BMC Microbiol.
  doi: 10.1186/1471-2180-5-35
– volume: 110
  start-page: 1657
  year: 1988
  ident: 10.1016/j.bbagen.2016.09.022_bb0165
  article-title: The OPLS [optimized potentials for liquid simulations] potential functions for proteins, energy minimizations for crystals of cyclic peptides and crambin
  publication-title: J. Am. Chem. Soc.
  doi: 10.1021/ja00214a001
– volume: 397
  start-page: 1156
  year: 2010
  ident: 10.1016/j.bbagen.2016.09.022_bb0190
  article-title: Comprehensive analysis of HAMP domains: implications for transmembrane signal transduction
  publication-title: J. Mol. Biol.
  doi: 10.1016/j.jmb.2010.02.031
– volume: 70
  start-page: 1991
  year: 2002
  ident: 10.1016/j.bbagen.2016.09.022_bb0095
  article-title: Involvement of PhoP-PhoS homologs in Enterococcus faecalis virulence
  publication-title: Infect. Immun.
  doi: 10.1128/IAI.70.4.1991-1996.2002
– volume: 4
  start-page: 65
  year: 2014
  ident: 10.1016/j.bbagen.2016.09.022_bb0210
  article-title: Functional characterization of WalRK: a two-component signal transduction system from Bacillus anthracis
  publication-title: FEBS Open Bio
  doi: 10.1016/j.fob.2013.12.005
– start-page: 43
  year: 2006
  ident: 10.1016/j.bbagen.2016.09.022_bb0150
  article-title: Scalable algorithms for molecular dynamics simulations on commodity clusters
– volume: 5
  start-page: 883
  year: 2010
  ident: 10.1016/j.bbagen.2016.09.022_bb0175
  article-title: The HADDOCK web server for data-driven biomolecular docking
  publication-title: Nat. Protoc.
  doi: 10.1038/nprot.2010.32
– volume: 459
  start-page: 623
  year: 2015
  ident: 10.1016/j.bbagen.2016.09.022_bb0185
  article-title: WalRK two component system of Bacillus anthracis responds to temperature and antibiotic stress
  publication-title: Biochem. Biophys. Res. Commun.
  doi: 10.1016/j.bbrc.2015.02.159
– volume: 49
  start-page: 1
  year: 2000
  ident: 10.1016/j.bbagen.2016.09.022_bb0020
  article-title: Biological and chemical terrorism: strategic plan for preparedness and response. Recommendations of the CDC strategic planning workgroup
  publication-title: MMWR Recomm. Rep.
– volume: 176
  start-page: 1348
  year: 1994
  ident: 10.1016/j.bbagen.2016.09.022_bb0245
  article-title: Sequential action of two-component genetic switches regulates the PHO regulon in Bacillus subtilis
  publication-title: J. Bacteriol.
  doi: 10.1128/jb.176.5.1348-1358.1994
– volume: 35
  start-page: 566
  year: 2000
  ident: 10.1016/j.bbagen.2016.09.022_bb0085
  article-title: A genomic analysis of two-component signal transduction in Streptococcus pneumoniae
  publication-title: Mol. Microbiol.
  doi: 10.1046/j.1365-2958.2000.01725.x
– volume: 215
  start-page: 403
  year: 1990
  ident: 10.1016/j.bbagen.2016.09.022_bb0125
  article-title: Basic local alignment search tool
  publication-title: J. Mol. Biol.
  doi: 10.1016/S0022-2836(05)80360-2
– volume: 79
  start-page: 1007
  year: 2012
  ident: 10.1016/j.bbagen.2016.09.022_bb0305
  article-title: Inhibition of bacterial virulence: drug-like molecules targeting the Salmonella enterica PhoP response regulator
  publication-title: Chem. Biol. Drug Des.
  doi: 10.1111/j.1747-0285.2012.01362.x
– volume: 105
  start-page: 6474
  year: 2001
  ident: 10.1016/j.bbagen.2016.09.022_bb0170
  article-title: Evaluation and reparametrization of the OPLS-AA force field for proteins via comparison with accurate quantum chemical calculations on peptides†
  publication-title: J. Phys. Chem. B
  doi: 10.1021/jp003919d
– volume: 16
  start-page: 833
  year: 2015
  ident: 10.1016/j.bbagen.2016.09.022_bb0260
  article-title: Genome-wide survey of two-component signal transduction systems in the plant growth-promoting bacterium Azospirillum
  publication-title: BMC Genomics
  doi: 10.1186/s12864-015-1962-x
– volume: 95
  start-page: 5857
  year: 1998
  ident: 10.1016/j.bbagen.2016.09.022_bb0115
  article-title: SMART, a simple modular architecture research tool: identification of signaling domains
  publication-title: Proc. Natl. Acad. Sci.
  doi: 10.1073/pnas.95.11.5857
– volume: 200
  start-page: 1126
  year: 2009
  ident: 10.1016/j.bbagen.2016.09.022_bb0005
  article-title: Phosphate depletion: a novel trigger for Mycobacterium tuberculosis persistence
  publication-title: J. Infect. Dis.
  doi: 10.1086/605700
– volume: 8
  start-page: e74444
  year: 2013
  ident: 10.1016/j.bbagen.2016.09.022_bb0080
  article-title: The effect of pstS and phoB on quorum sensing and swarming motility in Pseudomonas aeruginosa
  publication-title: PLoS One
  doi: 10.1371/journal.pone.0074444
– volume: 190
  start-page: 6559
  year: 2008
  ident: 10.1016/j.bbagen.2016.09.022_bb0255
  article-title: The two-component system PhoPR of Clostridium acetobutylicum is involved in phosphate-dependent gene regulation
  publication-title: J. Bacteriol.
  doi: 10.1128/JB.00574-08
– volume: 179
  start-page: 6302
  year: 1997
  ident: 10.1016/j.bbagen.2016.09.022_bb0110
  article-title: Bacillus subtilis PhoP binds to the phoB tandem promoter exclusively within the phosphate starvation-inducible promoter
  publication-title: J. Bacteriol.
  doi: 10.1128/jb.179.20.6302-6310.1997
– volume: 285
  start-page: 7254
  year: 2010
  ident: 10.1016/j.bbagen.2016.09.022_bb0105
  article-title: PemK toxin of Bacillus anthracis is a ribonuclease an insight into its active site, structure, and function
  publication-title: J. Biol. Chem.
  doi: 10.1074/jbc.M109.073387
– volume: 12
  start-page: 955
  year: 2013
  ident: 10.1016/j.bbagen.2016.09.022_bb0155
  article-title: Anthrax vaccines: present status and future prospects
  publication-title: Expert Rev. Vaccines
  doi: 10.1586/14760584.2013.814860
– start-page: 1357
  year: 1996
  ident: 10.1016/j.bbagen.2016.09.022_bb0060
– volume: 10
  start-page: 432
  year: 2011
  ident: 10.1016/j.bbagen.2016.09.022_bb0315
  article-title: In silico identification of putative drug targets in Klebsiella pneumonia MGH 78578
  publication-title: Indian J. Biotechnol.
– volume: 82
  start-page: 275
  year: 2011
  ident: 10.1016/j.bbagen.2016.09.022_bb0275
  article-title: Negative control in two-component signal transduction by transmitter phosphatase activity
  publication-title: Mol. Microbiol.
  doi: 10.1111/j.1365-2958.2011.07829.x
– volume: 11
  year: 2012
  ident: 10.1016/j.bbagen.2016.09.022_bb0075
  article-title: Metabolic switches and adaptations deduced from the proteomes of Streptomyces coelicolor wild type and phoP mutant grown in batch culture
  publication-title: Mol. Cell Proteomics
  doi: 10.1074/mcp.M111.013797
– volume: 100
  start-page: 6133
  year: 2003
  ident: 10.1016/j.bbagen.2016.09.022_bb0250
  article-title: The two-component PhoR-PhoP system controls both primary metabolism and secondary metabolite biosynthesis in Streptomyces lividans
  publication-title: Proc. Natl. Acad. Sci.
  doi: 10.1073/pnas.0931429100
– volume: 56
  start-page: 558
  year: 1985
  ident: 10.1016/j.bbagen.2016.09.022_bb0215
  article-title: Isolation and characterization of deletion mutants of herpes simplex virus type 1 in the gene encoding immediate-early regulatory protein ICP4
  publication-title: J. Virol.
  doi: 10.1128/JVI.56.2.558-570.1985
– volume: 9
  start-page: 570
  year: 2002
  ident: 10.1016/j.bbagen.2016.09.022_bb0200
  article-title: Structure and catalytic mechanism of the E. coli chemotaxis phosphatase CheZ
  publication-title: Nat. Struct. Mol. Biol.
– volume: 204
  start-page: 111
  year: 2001
  ident: 10.1016/j.bbagen.2016.09.022_bb0090
  article-title: Listeria monocytogenes response regulators important for stress tolerance and pathogenesis
  publication-title: FEMS Microbiol. Lett.
  doi: 10.1111/j.1574-6968.2001.tb10872.x
– volume: 51
  start-page: 47
  year: 1993
  ident: 10.1016/j.bbagen.2016.09.022_bb0055
  article-title: Gene regulation by phosphate in enteric bacteria
  publication-title: J. Cell. Biochem.
  doi: 10.1002/jcb.240510110
– volume: 8
  start-page: 471
  year: 2010
  ident: 10.1016/j.bbagen.2016.09.022_bb0195
  article-title: Using structural information to change the phosphotransfer specificity of a two-component chemotaxis signalling complex
  publication-title: PLoS Biol.
  doi: 10.1371/journal.pbio.1000306
– volume: 139
  start-page: 325
  year: 2009
  ident: 10.1016/j.bbagen.2016.09.022_bb0235
  article-title: Structural insight into partner specificity and phosphoryl transfer in two-component signal transduction
  publication-title: Cell
  doi: 10.1016/j.cell.2009.08.032
– volume: 2
  start-page: e143
  year: 2006
  ident: 10.1016/j.bbagen.2016.09.022_bb0045
  article-title: The evolution of two-component systems in bacteria reveals different strategies for niche adaptation
  publication-title: PLoS Comput. Biol.
  doi: 10.1371/journal.pcbi.0020143
– volume: 18
  start-page: 2714
  year: 1997
  ident: 10.1016/j.bbagen.2016.09.022_bb0135
  article-title: SWISS-MODEL and the Swiss-PdbViewer: an environment for comparative protein modeling
  publication-title: Electrophoresis
  doi: 10.1002/elps.1150181505
– volume: 75
  start-page: 348
  year: 2010
  ident: 10.1016/j.bbagen.2016.09.022_bb0145
  article-title: Probing the α-helical structural stability of stapled p53 peptides: molecular dynamics simulations and analysis
  publication-title: Chem. Biol. Drug Des.
  doi: 10.1111/j.1747-0285.2010.00951.x
– volume: 153
  start-page: 82
  year: 2011
  ident: 10.1016/j.bbagen.2016.09.022_bb0300
  article-title: The Pho regulon and the pathogenesis of Escherichia coli
  publication-title: Vet. Microbiol.
  doi: 10.1016/j.vetmic.2011.05.043
– year: 2000
  ident: 10.1016/j.bbagen.2016.09.022_bb0230
– volume: 118
  start-page: 11225
  year: 1996
  ident: 10.1016/j.bbagen.2016.09.022_bb0160
  article-title: Development and testing of the OPLS all-atom force field on conformational energetics and properties of organic liquids
  publication-title: J. Am. Chem. Soc.
  doi: 10.1021/ja9621760
– volume: 47
  start-page: 103
  year: 2003
  ident: 10.1016/j.bbagen.2016.09.022_bb0010
  article-title: Unravelling the biology of macrophage infection by gene expression profiling of intracellular Salmonella enterica
  publication-title: Mol. Microbiol.
  doi: 10.1046/j.1365-2958.2003.03313.x
– volume: 89
  start-page: 718
  year: 1992
  ident: 10.1016/j.bbagen.2016.09.022_bb0285
  article-title: Phosphorylation of bacterial response regulator proteins by low molecular weight phospho-donors
  publication-title: Proc. Natl. Acad. Sci.
  doi: 10.1073/pnas.89.2.718
– volume: 30
  start-page: 943
  year: 1998
  ident: 10.1016/j.bbagen.2016.09.022_bb0065
  article-title: Pho signal transduction network reveals direct transcriptional regulation of one two-component system by another two-component regulator: Bacillus subtilis PhoP directly regulates production of ResD
  publication-title: Mol. Microbiol.
  doi: 10.1046/j.1365-2958.1998.01122.x
– volume: 84
  start-page: 463
  year: 2012
  ident: 10.1016/j.bbagen.2016.09.022_bb0225
  article-title: The promoter architectural landscape of the Salmonella PhoP regulon
  publication-title: Mol. Microbiol.
  doi: 10.1111/j.1365-2958.2012.08036.x
– volume: 6
  start-page: 1509
  year: 2010
  ident: 10.1016/j.bbagen.2016.09.022_bb0140
  article-title: Prediction of absolute solvation free energies using molecular dynamics free energy perturbation and the OPLS force field
  publication-title: J. Chem. Theory Comput.
  doi: 10.1021/ct900587b
– volume: 69
  start-page: 183
  year: 2000
  ident: 10.1016/j.bbagen.2016.09.022_bb0035
  article-title: Two-component signal transduction
  publication-title: Annu. Rev. Biochem.
  doi: 10.1146/annurev.biochem.69.1.183
– volume: 7
  year: 2016
  ident: 10.1016/j.bbagen.2016.09.022_bb0100
  article-title: Identification of novel raft marker protein, FlotP in Bacillus anthracis
  publication-title: Front. Microbiol.
  doi: 10.3389/fmicb.2016.00169
– volume: 7
  start-page: 539
  year: 2011
  ident: 10.1016/j.bbagen.2016.09.022_bb0120
  article-title: Fast, scalable generation of high-quality protein multiple sequence alignments using Clustal Omega
  publication-title: Mol. Syst. Biol.
  doi: 10.1038/msb.2011.75
– volume: 234
  start-page: 779
  year: 1993
  ident: 10.1016/j.bbagen.2016.09.022_bb0130
  article-title: Comparative protein modelling by satisfaction of spatial restraints
  publication-title: J. Mol. Biol.
  doi: 10.1006/jmbi.1993.1626
– volume: 42
  start-page: 14075
  year: 2003
  ident: 10.1016/j.bbagen.2016.09.022_bb0205
  article-title: Mechanism of phosphatase activity in the chemotaxis response regulator CheY
  publication-title: Biochemistry
  doi: 10.1021/bi034883t
– volume: 13
  start-page: 177
  year: 2010
  ident: 10.1016/j.bbagen.2016.09.022_bb0270
  article-title: Auxiliary phosphatases in two-component signal transduction
  publication-title: Curr. Opin. Microbiol.
  doi: 10.1016/j.mib.2010.01.004
– volume: 269
  start-page: 1067
  year: 2002
  ident: 10.1016/j.bbagen.2016.09.022_bb0220
  article-title: Phosphorylation and dephosphorylation of histidine residues in proteins
  publication-title: Eur. J. Biochem.
  doi: 10.1046/j.1432-1033.2002.02755.x
– year: 1959
  ident: 10.1016/j.bbagen.2016.09.022_bb0295
– volume: 71
  start-page: 497
  year: 2002
  ident: 10.1016/j.bbagen.2016.09.022_bb0290
  article-title: The Pho regulons of bacteria
  publication-title: Microbiology
  doi: 10.1023/A:1020547616096
– volume: 151
  start-page: 3041
  year: 2005
  ident: 10.1016/j.bbagen.2016.09.022_bb0070
  article-title: Analysis of teichoic acid biosynthesis regulation reveals that the extracytoplasmic function sigma factor σM is induced by phosphate depletion in Bacillus subtilis W23
  publication-title: Microbiology
  doi: 10.1099/mic.0.28021-0
– volume: 117
  start-page: 1
  year: 2003
  ident: 10.1016/j.bbagen.2016.09.022_bb0310
  article-title: New drug targets for Mycobacterium tuberculosis
  publication-title: Indian J. Med. Res.
– volume: 203
  start-page: 11
  year: 2001
  ident: 10.1016/j.bbagen.2016.09.022_bb0050
  article-title: Novel domains of the prokaryotic two-component signal transduction systems
  publication-title: FEMS Microbiol. Lett.
  doi: 10.1111/j.1574-6968.2001.tb10814.x
– year: 2012
  ident: 10.1016/j.bbagen.2016.09.022_bb0240
  article-title: Diverse control of metabolism and other cellular processes in Streptomyces coelicolor by the PhoP transcription factor: genome-wide identification of in vivo targets
  publication-title: Nucleic Acids Res.
  doi: 10.1093/nar/gks766
– volume: 1
  start-page: 306
  year: 1993
  ident: 10.1016/j.bbagen.2016.09.022_bb0280
  article-title: The essential tension: opposed reactions in bacterial two-component regulatory systems
  publication-title: Trends Microbiol.
  doi: 10.1016/0966-842X(93)90007-E
– volume: 95
  start-page: 7825
  year: 1998
  ident: 10.1016/j.bbagen.2016.09.022_bb0265
  article-title: Histidine kinase activity of the ETR1 ethylene receptor from Arabidopsis
  publication-title: Proc. Natl. Acad. Sci.
  doi: 10.1073/pnas.95.13.7825
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Snippet Recent report on importance of phosphate starvation (PS) in Bacillus anthracis (BA) pathogenesis warrants further investigation of the underlying regulatory...
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SubjectTerms Amino Acid Sequence
Amino Acids - metabolism
Animals
anthrax
Bacillus anthracis
Bacillus anthracis - drug effects
Bacillus anthracis - genetics
Bacillus anthracis - metabolism
Bacillus anthracis - pathogenicity
Bacterial Proteins - chemistry
Bacterial Proteins - metabolism
Base Sequence
Computer Simulation
DNA, Bacterial - metabolism
drugs
Gene Expression Regulation, Bacterial - drug effects
genetic markers
Histidine kinase
homeostasis
Homeostasis - drug effects
Mice
Molecular Dynamics Simulation
Operon - genetics
pathogenesis
pathogens
PhoPR
Phosphate starvation
phosphates
Phosphates - metabolism
Phosphates - pharmacology
Phosphorylation - drug effects
prokaryotic cells
Promoter Regions, Genetic
Protein Binding - drug effects
protein phosphorylation
quantitative polymerase chain reaction
Real-Time Polymerase Chain Reaction
Reproducibility of Results
Response regulator
reverse transcriptase polymerase chain reaction
Sequence Homology, Amino Acid
Signal Transduction - drug effects
starvation
Survival Analysis
Two component system
Up-Regulation - drug effects
virulence
Virulence - drug effects
Virulence - genetics
Title Functional characterization of PhoPR two component system and its implication in regulating phosphate homeostasis in Bacillus anthracis
URI https://dx.doi.org/10.1016/j.bbagen.2016.09.022
https://www.ncbi.nlm.nih.gov/pubmed/27667172
https://www.proquest.com/docview/1835394509
https://www.proquest.com/docview/2000226464
Volume 1861
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