Kinetic and structural analysis of Escherichia coli phosphoenolpyruvate carboxykinase mutants

• Published in: Biochimica et biophysica acta. General subjects Vol. 1864; no. 4; p. 129517
• Main Authors: Sokaribo, Akosiererem, Novakovski, Brian A.A., Cotelesage, Julien, White, Aaron P., Sanders, David, Goldie, Hughes
• Format: Journal Article
• Language: English
• Published: Netherlands Elsevier B.V 01.04.2020
• Subjects: amino acids; blood glucose; carbon dioxide; carboxy-lyases; Catalysis; catalytic activity; Decarboxylation; diabetes mellitus; drugs; Enzyme; Escherichia coli; gluconeogenesis; humans; Kinase; manganese; mutants; mutation; oxaloacetic acid; patients; Phosphoenolpyruvate carboxykinase (PEPCK); Structure; X-radiation; Phosphoenolpyruvate carboxykinase (PEPCK); Catalysis; Structure; Enzyme; Kinase; Decarboxylation
• ISSN: 0304-4165; 1872-8006; 1872-8006
• DOI: 10.1016/j.bbagen.2020.129517

Phosphoenolpyruvate carboxykinase (PEPCK) is a metabolic enzyme in the gluconeogenesis pathway, where it catalyzes the reversible conversion of oxaloacetate (OAA) to phosphoenolpyruvate (PEP) and CO2. The substrates for Escherichia coli PEPCK are OAA and MgATP, with Mn2+ acting as a cofactor. Analysis of PEPCK structures have revealed amino acid residues involved in substrate/cofactor coordination during catalysis. Key residues involved in coordinating the different substrates and cofactor bound to E. coli PEPCK were mutated. Purified mutant enzymes were used for kinetic assays. The structure of some mutant enzymes were determined using X-ray crystallography. Mutation of residues D269 and H232, which comprise part of the coordination sphere of Mn2+, reduced kcat by 14-fold, and significantly increased the Km values for Mn2+ and OAA. Mutation of K254 a key residue in the P-loop motif that interacts with MgATP, significantly elevated the Km value for MgATP and reduced kcat. R65 and R333 are key residues that interacts with OAA. The R65Q and R333Q mutations significantly increased the Km value for OAA and reduced kcat respectively. Our results show that mutation of residues involved in coordinating OAA, MgATP and Mn2+ significantly reduce PEPCK activity. K254 plays an important role in phosphoryl transfer, while R333 is involved in both OAA decarboxylation and phosphoryl transfer by E. coli PEPCK. In higher organisms including humans, PEPCK helps to regulate blood glucose levels, hence PEPCK is a potential drug target for patients with non-insulin dependent diabetes mellitus. •Phosphoenolpyruvate carboxykinase (PEPCK) is an important metabolic enzyme.•Conserved residues in the active site of E. coli PEPCK were mutated.•Kinetic data highlight the importance of mutated residues during catalysis.