Methane-Fueled Syntrophy through Extracellular Electron Transfer: Uncovering the Genomic Traits Conserved within Diverse Bacterial Partners of Anaerobic Methanotrophic Archaea
The anaerobic oxidation of methane by anaerobic methanotrophic (ANME) archaea in syntrophic partnership with deltaproteobacterial sulfate-reducing bacteria (SRB) is the primary mechanism for methane removal in ocean sediments. The mechanism of their syntrophy has been the subject of much research as...
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| Published in | mBio Vol. 8; no. 4 |
|---|---|
| Main Authors | , , , , , |
| Format | Journal Article |
| Language | English |
| Published |
United States
American Society for Microbiology
01.08.2017
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| Subjects | |
| Online Access | Get full text |
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| Abstract | The anaerobic oxidation of methane by anaerobic methanotrophic (ANME) archaea in syntrophic partnership with deltaproteobacterial sulfate-reducing bacteria (SRB) is the primary mechanism for methane removal in ocean sediments. The mechanism of their syntrophy has been the subject of much research as traditional intermediate compounds, such as hydrogen and formate, failed to decouple the partners. Recent findings have indicated the potential for extracellular electron transfer from ANME archaea to SRB, though it is unclear how extracellular electrons are integrated into the metabolism of the SRB partner. We used metagenomics to reconstruct eight genomes from the globally distributed SEEP-SRB1 clade of ANME partner bacteria to determine what genomic features are required for syntrophy. The SEEP-SRB1 genomes contain large multiheme cytochromes that were not found in previously described free-living SRB and also lack periplasmic hydrogenases that may prevent an independent lifestyle without an extracellular source of electrons from ANME archaea. Metaproteomics revealed the expression of these cytochromes at
in situ
methane seep sediments from three sites along the Pacific coast of the United States. Phylogenetic analysis showed that these cytochromes appear to have been horizontally transferred from metal-respiring members of the
Deltaproteobacteria
such as
Geobacter
and may allow these syntrophic SRB to accept extracellular electrons in place of other chemical/organic electron donors.
IMPORTANCE
Some archaea, known as anaerobic methanotrophs, are capable of converting methane into carbon dioxide when they are growing syntopically with sulfate-reducing bacteria. This partnership is the primary mechanism for methane removal in ocean sediments; however, there is still much to learn about how this syntrophy works. Previous studies have failed to identify the metabolic intermediate, such as hydrogen or formate, that is passed between partners. However, recent analysis of methanotrophic archaea has suggested that the syntrophy is formed through direct electron transfer. In this research, we analyzed the genomes of multiple partner bacteria and showed that they also contain the genes necessary to perform extracellular electron transfer, which are absent in related bacteria that do not form syntrophic partnerships with anaerobic methanotrophs. This genomic evidence shows a possible mechanism for direct electron transfer from methanotrophic archaea into the metabolism of the partner bacteria.
Some archaea, known as anaerobic methanotrophs, are capable of converting methane into carbon dioxide when they are growing syntopically with sulfate-reducing bacteria. This partnership is the primary mechanism for methane removal in ocean sediments; however, there is still much to learn about how this syntrophy works. Previous studies have failed to identify the metabolic intermediate, such as hydrogen or formate, that is passed between partners. However, recent analysis of methanotrophic archaea has suggested that the syntrophy is formed through direct electron transfer. In this research, we analyzed the genomes of multiple partner bacteria and showed that they also contain the genes necessary to perform extracellular electron transfer, which are absent in related bacteria that do not form syntrophic partnerships with anaerobic methanotrophs. This genomic evidence shows a possible mechanism for direct electron transfer from methanotrophic archaea into the metabolism of the partner bacteria. |
|---|---|
| AbstractList | The anaerobic oxidation of methane by anaerobic methanotrophic (ANME) archaea in syntrophic partnership with deltaproteobacterial sulfate-reducing bacteria (SRB) is the primary mechanism for methane removal in ocean sediments. The mechanism of their syntrophy has been the subject of much research as traditional intermediate compounds, such as hydrogen and formate, failed to decouple the partners. Recent findings have indicated the potential for extracellular electron transfer from ANME archaea to SRB, though it is unclear how extracellular electrons are integrated into the metabolism of the SRB partner. We used metagenomics to reconstruct eight genomes from the globally distributed SEEP-SRB1 clade of ANME partner bacteria to determine what genomic features are required for syntrophy. The SEEP-SRB1 genomes contain large multiheme cytochromes that were not found in previously described free-living SRB and also lack periplasmic hydrogenases that may prevent an independent lifestyle without an extracellular source of electrons from ANME archaea. Metaproteomics revealed the expression of these cytochromes at
in situ
methane seep sediments from three sites along the Pacific coast of the United States. Phylogenetic analysis showed that these cytochromes appear to have been horizontally transferred from metal-respiring members of the
Deltaproteobacteria
such as
Geobacter
and may allow these syntrophic SRB to accept extracellular electrons in place of other chemical/organic electron donors.
Some archaea, known as anaerobic methanotrophs, are capable of converting methane into carbon dioxide when they are growing syntopically with sulfate-reducing bacteria. This partnership is the primary mechanism for methane removal in ocean sediments; however, there is still much to learn about how this syntrophy works. Previous studies have failed to identify the metabolic intermediate, such as hydrogen or formate, that is passed between partners. However, recent analysis of methanotrophic archaea has suggested that the syntrophy is formed through direct electron transfer. In this research, we analyzed the genomes of multiple partner bacteria and showed that they also contain the genes necessary to perform extracellular electron transfer, which are absent in related bacteria that do not form syntrophic partnerships with anaerobic methanotrophs. This genomic evidence shows a possible mechanism for direct electron transfer from methanotrophic archaea into the metabolism of the partner bacteria. The anaerobic oxidation of methane by anaerobic methanotrophic (ANME) archaea in syntrophic partnership with deltaproteobacterial sulfate-reducing bacteria (SRB) is the primary mechanism for methane removal in ocean sediments. The mechanism of their syntrophy has been the subject of much research as traditional intermediate compounds, such as hydrogen and formate, failed to decouple the partners. Recent findings have indicated the potential for extracellular electron transfer from ANME archaea to SRB, though it is unclear how extracellular electrons are integrated into the metabolism of the SRB partner. We used metagenomics to reconstruct eight genomes from the globally distributed SEEP-SRB1 clade of ANME partner bacteria to determine what genomic features are required for syntrophy. The SEEP-SRB1 genomes contain large multiheme cytochromes that were not found in previously described free-living SRB and also lack periplasmic hydrogenases that may prevent an independent lifestyle without an extracellular source of electrons from ANME archaea. Metaproteomics revealed the expression of these cytochromes at in situ methane seep sediments from three sites along the Pacific coast of the United States. Phylogenetic analysis showed that these cytochromes appear to have been horizontally transferred from metal-respiring members of the Deltaproteobacteria such as Geobacter and may allow these syntrophic SRB to accept extracellular electrons in place of other chemical/organic electron donors. Some archaea, known as anaerobic methanotrophs, are capable of converting methane into carbon dioxide when they are growing syntopically with sulfate-reducing bacteria. This partnership is the primary mechanism for methane removal in ocean sediments; however, there is still much to learn about how this syntrophy works. Previous studies have failed to identify the metabolic intermediate, such as hydrogen or formate, that is passed between partners. However, recent analysis of methanotrophic archaea has suggested that the syntrophy is formed through direct electron transfer. In this research, we analyzed the genomes of multiple partner bacteria and showed that they also contain the genes necessary to perform extracellular electron transfer, which are absent in related bacteria that do not form syntrophic partnerships with anaerobic methanotrophs. This genomic evidence shows a possible mechanism for direct electron transfer from methanotrophic archaea into the metabolism of the partner bacteria. The anaerobic oxidation of methane by anaerobic methanotrophic (ANME) archaea in syntrophic partnership with deltaproteobacterial sulfate-reducing bacteria (SRB) is the primary mechanism for methane removal in ocean sediments. The mechanism of their syntrophy has been the subject of much research as traditional intermediate compounds, such as hydrogen and formate, failed to decouple the partners. Recent findings have indicated the potential for extracellular electron transfer from ANME archaea to SRB, though it is unclear how extracellular electrons are integrated into the metabolism of the SRB partner. We used metagenomics to reconstruct eight genomes from the globally distributed SEEP-SRB1 clade of ANME partner bacteria to determine what genomic features are required for syntrophy. The SEEP-SRB1 genomes contain large multiheme cytochromes that were not found in previously described free-living SRB and also lack periplasmic hydrogenases that may prevent an independent lifestyle without an extracellular source of electrons from ANME archaea. Metaproteomics revealed the expression of these cytochromes at in situ methane seep sediments from three sites along the Pacific coast of the United States. Phylogenetic analysis showed that these cytochromes appear to have been horizontally transferred from metal-respiring members of the Deltaproteobacteria such as Geobacter and may allow these syntrophic SRB to accept extracellular electrons in place of other chemical/organic electron donors. IMPORTANCE Some archaea, known as anaerobic methanotrophs, are capable of converting methane into carbon dioxide when they are growing syntopically with sulfate-reducing bacteria. This partnership is the primary mechanism for methane removal in ocean sediments; however, there is still much to learn about how this syntrophy works. Previous studies have failed to identify the metabolic intermediate, such as hydrogen or formate, that is passed between partners. However, recent analysis of methanotrophic archaea has suggested that the syntrophy is formed through direct electron transfer. In this research, we analyzed the genomes of multiple partner bacteria and showed that they also contain the genes necessary to perform extracellular electron transfer, which are absent in related bacteria that do not form syntrophic partnerships with anaerobic methanotrophs. This genomic evidence shows a possible mechanism for direct electron transfer from methanotrophic archaea into the metabolism of the partner bacteria. Some archaea, known as anaerobic methanotrophs, are capable of converting methane into carbon dioxide when they are growing syntopically with sulfate-reducing bacteria. This partnership is the primary mechanism for methane removal in ocean sediments; however, there is still much to learn about how this syntrophy works. Previous studies have failed to identify the metabolic intermediate, such as hydrogen or formate, that is passed between partners. However, recent analysis of methanotrophic archaea has suggested that the syntrophy is formed through direct electron transfer. In this research, we analyzed the genomes of multiple partner bacteria and showed that they also contain the genes necessary to perform extracellular electron transfer, which are absent in related bacteria that do not form syntrophic partnerships with anaerobic methanotrophs. This genomic evidence shows a possible mechanism for direct electron transfer from methanotrophic archaea into the metabolism of the partner bacteria. The anaerobic oxidation of methane by anaerobic methanotrophic (ANME) archaea in syntrophic partnership with deltaproteobacterial sulfate-reducing bacteria (SRB) is the primary mechanism for methane removal in ocean sediments. The mechanism of their syntrophy has been the subject of much research as traditional intermediate compounds, such as hydrogen and formate, failed to decouple the partners. Recent findings have indicated the potential for extracellular electron transfer from ANME archaea to SRB, though it is unclear how extracellular electrons are integrated into the metabolism of the SRB partner. We used metagenomics to reconstruct eight genomes from the globally distributed SEEP-SRB1 clade of ANME partner bacteria to determine what genomic features are required for syntrophy. The SEEP-SRB1 genomes contain large multiheme cytochromes that were not found in previously described free-living SRB and also lack periplasmic hydrogenases that may prevent an independent lifestyle without an extracellular source of electrons from ANME archaea. Metaproteomics revealed the expression of these cytochromes at in situ methane seep sediments from three sites along the Pacific coast of the United States. Phylogenetic analysis showed that these cytochromes appear to have been horizontally transferred from metal-respiring members of the Deltaproteobacteria such as Geobacter and may allow these syntrophic SRB to accept extracellular electrons in place of other chemical/organic electron donors.IMPORTANCE Some archaea, known as anaerobic methanotrophs, are capable of converting methane into carbon dioxide when they are growing syntopically with sulfate-reducing bacteria. This partnership is the primary mechanism for methane removal in ocean sediments; however, there is still much to learn about how this syntrophy works. Previous studies have failed to identify the metabolic intermediate, such as hydrogen or formate, that is passed between partners. However, recent analysis of methanotrophic archaea has suggested that the syntrophy is formed through direct electron transfer. In this research, we analyzed the genomes of multiple partner bacteria and showed that they also contain the genes necessary to perform extracellular electron transfer, which are absent in related bacteria that do not form syntrophic partnerships with anaerobic methanotrophs. This genomic evidence shows a possible mechanism for direct electron transfer from methanotrophic archaea into the metabolism of the partner bacteria.The anaerobic oxidation of methane by anaerobic methanotrophic (ANME) archaea in syntrophic partnership with deltaproteobacterial sulfate-reducing bacteria (SRB) is the primary mechanism for methane removal in ocean sediments. The mechanism of their syntrophy has been the subject of much research as traditional intermediate compounds, such as hydrogen and formate, failed to decouple the partners. Recent findings have indicated the potential for extracellular electron transfer from ANME archaea to SRB, though it is unclear how extracellular electrons are integrated into the metabolism of the SRB partner. We used metagenomics to reconstruct eight genomes from the globally distributed SEEP-SRB1 clade of ANME partner bacteria to determine what genomic features are required for syntrophy. The SEEP-SRB1 genomes contain large multiheme cytochromes that were not found in previously described free-living SRB and also lack periplasmic hydrogenases that may prevent an independent lifestyle without an extracellular source of electrons from ANME archaea. Metaproteomics revealed the expression of these cytochromes at in situ methane seep sediments from three sites along the Pacific coast of the United States. Phylogenetic analysis showed that these cytochromes appear to have been horizontally transferred from metal-respiring members of the Deltaproteobacteria such as Geobacter and may allow these syntrophic SRB to accept extracellular electrons in place of other chemical/organic electron donors.IMPORTANCE Some archaea, known as anaerobic methanotrophs, are capable of converting methane into carbon dioxide when they are growing syntopically with sulfate-reducing bacteria. This partnership is the primary mechanism for methane removal in ocean sediments; however, there is still much to learn about how this syntrophy works. Previous studies have failed to identify the metabolic intermediate, such as hydrogen or formate, that is passed between partners. However, recent analysis of methanotrophic archaea has suggested that the syntrophy is formed through direct electron transfer. In this research, we analyzed the genomes of multiple partner bacteria and showed that they also contain the genes necessary to perform extracellular electron transfer, which are absent in related bacteria that do not form syntrophic partnerships with anaerobic methanotrophs. This genomic evidence shows a possible mechanism for direct electron transfer from methanotrophic archaea into the metabolism of the partner bacteria. ABSTRACT The anaerobic oxidation of methane by anaerobic methanotrophic (ANME) archaea in syntrophic partnership with deltaproteobacterial sulfate-reducing bacteria (SRB) is the primary mechanism for methane removal in ocean sediments. The mechanism of their syntrophy has been the subject of much research as traditional intermediate compounds, such as hydrogen and formate, failed to decouple the partners. Recent findings have indicated the potential for extracellular electron transfer from ANME archaea to SRB, though it is unclear how extracellular electrons are integrated into the metabolism of the SRB partner. We used metagenomics to reconstruct eight genomes from the globally distributed SEEP-SRB1 clade of ANME partner bacteria to determine what genomic features are required for syntrophy. The SEEP-SRB1 genomes contain large multiheme cytochromes that were not found in previously described free-living SRB and also lack periplasmic hydrogenases that may prevent an independent lifestyle without an extracellular source of electrons from ANME archaea. Metaproteomics revealed the expression of these cytochromes at in situ methane seep sediments from three sites along the Pacific coast of the United States. Phylogenetic analysis showed that these cytochromes appear to have been horizontally transferred from metal-respiring members of the Deltaproteobacteria such as Geobacter and may allow these syntrophic SRB to accept extracellular electrons in place of other chemical/organic electron donors. IMPORTANCE Some archaea, known as anaerobic methanotrophs, are capable of converting methane into carbon dioxide when they are growing syntopically with sulfate-reducing bacteria. This partnership is the primary mechanism for methane removal in ocean sediments; however, there is still much to learn about how this syntrophy works. Previous studies have failed to identify the metabolic intermediate, such as hydrogen or formate, that is passed between partners. However, recent analysis of methanotrophic archaea has suggested that the syntrophy is formed through direct electron transfer. In this research, we analyzed the genomes of multiple partner bacteria and showed that they also contain the genes necessary to perform extracellular electron transfer, which are absent in related bacteria that do not form syntrophic partnerships with anaerobic methanotrophs. This genomic evidence shows a possible mechanism for direct electron transfer from methanotrophic archaea into the metabolism of the partner bacteria. The anaerobic oxidation of methane by anaerobic methanotrophic (ANME) archaea in syntrophic partnership with deltaproteobacterial sulfate-reducing bacteria (SRB) is the primary mechanism for methane removal in ocean sediments. The mechanism of their syntrophy has been the subject of much research as traditional intermediate compounds, such as hydrogen and formate, failed to decouple the partners. Recent findings have indicated the potential for extracellular electron transfer from ANME archaea to SRB, though it is unclear how extracellular electrons are integrated into the metabolism of the SRB partner. We used metagenomics to reconstruct eight genomes from the globally distributed SEEP-SRB1 clade of ANME partner bacteria to determine what genomic features are required for syntrophy. The SEEP-SRB1 genomes contain large multiheme cytochromes that were not found in previously described free-living SRB and also lack periplasmic hydrogenases that may prevent an independent lifestyle without an extracellular source of electrons from ANME archaea. Metaproteomics revealed the expression of these cytochromes at methane seep sediments from three sites along the Pacific coast of the United States. Phylogenetic analysis showed that these cytochromes appear to have been horizontally transferred from metal-respiring members of the such as and may allow these syntrophic SRB to accept extracellular electrons in place of other chemical/organic electron donors. Some archaea, known as anaerobic methanotrophs, are capable of converting methane into carbon dioxide when they are growing syntopically with sulfate-reducing bacteria. This partnership is the primary mechanism for methane removal in ocean sediments; however, there is still much to learn about how this syntrophy works. Previous studies have failed to identify the metabolic intermediate, such as hydrogen or formate, that is passed between partners. However, recent analysis of methanotrophic archaea has suggested that the syntrophy is formed through direct electron transfer. In this research, we analyzed the genomes of multiple partner bacteria and showed that they also contain the genes necessary to perform extracellular electron transfer, which are absent in related bacteria that do not form syntrophic partnerships with anaerobic methanotrophs. This genomic evidence shows a possible mechanism for direct electron transfer from methanotrophic archaea into the metabolism of the partner bacteria. |
| Author | Chourey, Karuna Hettich, Robert L. Tyson, Gene W. Orphan, Victoria J. Iyer, Ramsunder Skennerton, Connor T. |
| Author_xml | – sequence: 1 givenname: Connor T. orcidid: 0000-0003-1320-4873 surname: Skennerton fullname: Skennerton, Connor T. organization: Division of Geological and Planetary Sciences, California Institute of Technology, Pasadena, California, USA – sequence: 2 givenname: Karuna surname: Chourey fullname: Chourey, Karuna organization: Chemical Sciences Division, Oak Ridge National Laboratory, Oak Ridge, Tennessee, USA – sequence: 3 givenname: Ramsunder surname: Iyer fullname: Iyer, Ramsunder organization: Genome Science and Technology, University of Tennessee, Knoxville, Tennessee, USA – sequence: 4 givenname: Robert L. surname: Hettich fullname: Hettich, Robert L. organization: Chemical Sciences Division, Oak Ridge National Laboratory, Oak Ridge, Tennessee, USA, Genome Science and Technology, University of Tennessee, Knoxville, Tennessee, USA – sequence: 5 givenname: Gene W. surname: Tyson fullname: Tyson, Gene W. organization: Australian Centre for Ecogenomics, School of Chemistry and Molecular Biosciences, University of Queensland, Brisbane, Queensland, Australia – sequence: 6 givenname: Victoria J. surname: Orphan fullname: Orphan, Victoria J. organization: Division of Geological and Planetary Sciences, California Institute of Technology, Pasadena, California, USA |
| BackLink | https://www.ncbi.nlm.nih.gov/pubmed/28765215$$D View this record in MEDLINE/PubMed https://www.osti.gov/servlets/purl/1394609$$D View this record in Osti.gov |
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| Cites_doi | 10.1038/nature15512 10.1126/science.1196526 10.1016/bs.ampbs.2015.05.002 10.1093/molbev/msw046 10.1128/AEM.00895-14 10.1111/j.1365-2958.2012.08088.x 10.1073/pnas.0606379103 10.1016/j.bioelechem.2010.07.005 10.1038/35036572 10.1073/pnas.0711303105 10.1099/mic.0.064089-0 10.1021/pr500936p 10.1038/ismej.2011.77 10.1128/AEM.03837-12 10.1038/nmeth1019 10.1111/j.1462-2920.2008.01653.x 10.3389/fmicb.2014.00784 10.1111/j.1462-2920.2012.02716.x 10.1111/1462-2920.12689 10.1111/j.1462-2920.2010.02275.x 10.1128/JB.00411-13 10.1111/j.1462-2920.2012.02832.x 10.3389/fmicb.2016.00046 10.1021/pr060502x 10.1128/AEM.67.4.1922-1934.2001 10.3389/fmicb.2011.00069 10.1186/1471-2105-10-421 10.1111/1758-2229.12093 10.1128/AEM.00016-07 10.1128/JB.187.18.6258-6264.2005 10.1093/nar/gkm321 10.1111/j.1462-2920.2007.01441.x 10.1093/bioinformatics/btu033 10.1016/j.bbabio.2016.01.001 10.1007/s00792-008-0148-8 10.1021/pr100787q 10.1093/nar/gkh340 10.1111/j.1462-2920.2009.02083.x 10.1038/ngeo1926 10.1128/mBio.00855-16 10.1126/science.aad3558 10.7717/peerj.603 10.1074/jbc.M110.124305 10.1021/pr500983v 10.1038/ismej.2013.212 10.1007/s10482-007-9212-0 10.3389/fmicb.2014.00657 10.1021/pr0604054 10.1126/science.1061338 10.1111/j.1462-2920.2004.00669.x 10.1021/ac303053e 10.1111/1462-2920.13283 10.1126/science.1178223 10.1016/j.bbabio.2014.03.007 10.1038/ismej.2016.55 10.3389/fmicb.2015.00439 10.1042/BST20120182 10.1074/mcp.M900317-MCP200 10.1093/nar/gku989 10.1039/C3EE42189A 10.1126/science.1100025 10.1039/c0mt00084a 10.1186/1471-2105-12-124 10.1038/nrmicro.2016.93 10.3389/fmicb.2015.00575 10.7717/peerj.1165 10.1093/bioinformatics/btv033 10.1111/1462-2920.12247 10.3389/fmicb.2016.00563 10.1371/journal.pone.0077033 10.3389/fmicb.2013.00254 10.1038/nature15733 10.1021/bi0610294 10.1093/nar/gku1243 10.1021/pr300709k 10.1126/science.aad7154 10.1023/B:JOBB.0000019599.43969.33 10.1074/mcp.M500394-MCP200 10.1038/ismej.2013.147 10.1002/pmic.201300155 10.1038/ncomms12770 |
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| Copyright | Copyright © 2017 Skennerton et al. Copyright © 2017 Skennerton et al. 2017 Skennerton et al. |
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| Keywords | extracellular electron transfer anaerobic oxidation of methane methane seeps sulfate-reducing bacteria ANME SEEP-SRB1 multiheme cytochrome AOM |
| Language | English |
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| References | e_1_3_2_26_2 e_1_3_2_49_2 e_1_3_2_28_2 e_1_3_2_41_2 e_1_3_2_64_2 e_1_3_2_20_2 e_1_3_2_43_2 e_1_3_2_62_2 e_1_3_2_22_2 e_1_3_2_45_2 e_1_3_2_68_2 e_1_3_2_24_2 e_1_3_2_47_2 e_1_3_2_66_2 e_1_3_2_83_2 e_1_3_2_81_2 Grover H (e_1_3_2_60_2) 2012; 2012 e_1_3_2_9_2 e_1_3_2_16_2 e_1_3_2_37_2 e_1_3_2_7_2 e_1_3_2_18_2 e_1_3_2_39_2 e_1_3_2_54_2 e_1_3_2_75_2 e_1_3_2_10_2 e_1_3_2_31_2 e_1_3_2_52_2 e_1_3_2_73_2 e_1_3_2_5_2 e_1_3_2_12_2 e_1_3_2_33_2 e_1_3_2_58_2 e_1_3_2_79_2 e_1_3_2_3_2 e_1_3_2_14_2 e_1_3_2_35_2 e_1_3_2_56_2 e_1_3_2_77_2 e_1_3_2_50_2 e_1_3_2_71_2 e_1_3_2_27_2 e_1_3_2_48_2 e_1_3_2_29_2 e_1_3_2_40_2 e_1_3_2_65_2 e_1_3_2_21_2 e_1_3_2_42_2 e_1_3_2_63_2 e_1_3_2_23_2 e_1_3_2_44_2 e_1_3_2_69_2 e_1_3_2_25_2 e_1_3_2_46_2 e_1_3_2_67_2 e_1_3_2_61_2 e_1_3_2_82_2 e_1_3_2_80_2 e_1_3_2_15_2 e_1_3_2_38_2 e_1_3_2_8_2 e_1_3_2_17_2 e_1_3_2_59_2 e_1_3_2_6_2 e_1_3_2_19_2 e_1_3_2_30_2 e_1_3_2_53_2 e_1_3_2_76_2 e_1_3_2_32_2 e_1_3_2_51_2 e_1_3_2_74_2 e_1_3_2_11_2 e_1_3_2_34_2 e_1_3_2_57_2 e_1_3_2_4_2 e_1_3_2_13_2 e_1_3_2_36_2 e_1_3_2_55_2 e_1_3_2_78_2 e_1_3_2_2_2 e_1_3_2_72_2 e_1_3_2_70_2 28974619 - MBio. 2017 Oct 3;8(5) |
| References_xml | – ident: e_1_3_2_14_2 doi: 10.1038/nature15512 – ident: e_1_3_2_16_2 doi: 10.1126/science.1196526 – ident: e_1_3_2_37_2 doi: 10.1016/bs.ampbs.2015.05.002 – ident: e_1_3_2_83_2 doi: 10.1093/molbev/msw046 – ident: e_1_3_2_17_2 doi: 10.1128/AEM.00895-14 – ident: e_1_3_2_15_2 doi: 10.1111/j.1365-2958.2012.08088.x – ident: e_1_3_2_71_2 doi: 10.1073/pnas.0606379103 – ident: e_1_3_2_56_2 doi: 10.1016/j.bioelechem.2010.07.005 – ident: e_1_3_2_4_2 doi: 10.1038/35036572 – ident: e_1_3_2_23_2 doi: 10.1073/pnas.0711303105 – ident: e_1_3_2_49_2 doi: 10.1099/mic.0.064089-0 – ident: e_1_3_2_70_2 doi: 10.1021/pr500936p – ident: e_1_3_2_26_2 doi: 10.1038/ismej.2011.77 – ident: e_1_3_2_54_2 doi: 10.1128/AEM.03837-12 – ident: e_1_3_2_62_2 doi: 10.1038/nmeth1019 – ident: e_1_3_2_29_2 doi: 10.1111/j.1462-2920.2008.01653.x – ident: e_1_3_2_53_2 doi: 10.3389/fmicb.2014.00784 – ident: e_1_3_2_8_2 doi: 10.1111/j.1462-2920.2012.02716.x – ident: e_1_3_2_36_2 doi: 10.1111/1462-2920.12689 – ident: e_1_3_2_20_2 doi: 10.1111/j.1462-2920.2010.02275.x – ident: e_1_3_2_41_2 doi: 10.1128/JB.00411-13 – ident: e_1_3_2_25_2 doi: 10.1111/j.1462-2920.2012.02832.x – ident: e_1_3_2_10_2 doi: 10.3389/fmicb.2016.00046 – ident: e_1_3_2_66_2 doi: 10.1021/pr060502x – ident: e_1_3_2_21_2 doi: 10.1128/AEM.67.4.1922-1934.2001 – ident: e_1_3_2_39_2 doi: 10.3389/fmicb.2011.00069 – ident: e_1_3_2_76_2 doi: 10.1186/1471-2105-10-421 – ident: e_1_3_2_55_2 doi: 10.1111/1758-2229.12093 – ident: e_1_3_2_22_2 doi: 10.1128/AEM.00016-07 – ident: e_1_3_2_28_2 doi: 10.1128/JB.187.18.6258-6264.2005 – ident: e_1_3_2_78_2 doi: 10.1093/nar/gkm321 – ident: e_1_3_2_12_2 doi: 10.1111/j.1462-2920.2007.01441.x – ident: e_1_3_2_82_2 doi: 10.1093/bioinformatics/btu033 – ident: e_1_3_2_33_2 doi: 10.1016/j.bbabio.2016.01.001 – ident: e_1_3_2_44_2 doi: 10.1007/s00792-008-0148-8 – ident: e_1_3_2_64_2 doi: 10.1021/pr100787q – ident: e_1_3_2_77_2 doi: 10.1093/nar/gkh340 – ident: e_1_3_2_7_2 doi: 10.1111/j.1462-2920.2009.02083.x – ident: e_1_3_2_2_2 doi: 10.1038/ngeo1926 – ident: e_1_3_2_59_2 doi: 10.1128/mBio.00855-16 – ident: e_1_3_2_32_2 doi: 10.1126/science.aad3558 – ident: e_1_3_2_72_2 doi: 10.7717/peerj.603 – ident: e_1_3_2_38_2 doi: 10.1074/jbc.M110.124305 – ident: e_1_3_2_50_2 doi: 10.1021/pr500983v – ident: e_1_3_2_6_2 doi: 10.1038/ismej.2013.212 – ident: e_1_3_2_42_2 doi: 10.1007/s10482-007-9212-0 – ident: e_1_3_2_45_2 doi: 10.3389/fmicb.2014.00657 – ident: e_1_3_2_69_2 doi: 10.1021/pr0604054 – ident: e_1_3_2_3_2 doi: 10.1126/science.1061338 – ident: e_1_3_2_11_2 doi: 10.1111/j.1462-2920.2004.00669.x – ident: e_1_3_2_58_2 doi: 10.1021/ac303053e – ident: e_1_3_2_27_2 doi: 10.1111/1462-2920.13283 – ident: e_1_3_2_30_2 doi: 10.1126/science.1178223 – ident: e_1_3_2_34_2 doi: 10.1016/j.bbabio.2014.03.007 – ident: e_1_3_2_63_2 doi: 10.1038/ismej.2016.55 – ident: e_1_3_2_18_2 doi: 10.3389/fmicb.2015.00439 – ident: e_1_3_2_48_2 doi: 10.1042/BST20120182 – ident: e_1_3_2_61_2 doi: 10.1074/mcp.M900317-MCP200 – ident: e_1_3_2_79_2 doi: 10.1093/nar/gku989 – ident: e_1_3_2_43_2 doi: 10.1039/C3EE42189A – ident: e_1_3_2_5_2 doi: 10.1126/science.1100025 – ident: e_1_3_2_51_2 doi: 10.1039/c0mt00084a – ident: e_1_3_2_75_2 doi: 10.1186/1471-2105-12-124 – ident: e_1_3_2_46_2 doi: 10.1038/nrmicro.2016.93 – ident: e_1_3_2_52_2 doi: 10.3389/fmicb.2015.00575 – ident: e_1_3_2_74_2 doi: 10.7717/peerj.1165 – ident: e_1_3_2_73_2 doi: 10.1093/bioinformatics/btv033 – volume: 2012 start-page: 591 year: 2012 ident: e_1_3_2_60_2 article-title: Efficient processing of models for large-scale shotgun proteomics data publication-title: Int Conf Collab Comput – ident: e_1_3_2_31_2 doi: 10.1111/1462-2920.12247 – ident: e_1_3_2_9_2 doi: 10.3389/fmicb.2016.00563 – ident: e_1_3_2_81_2 doi: 10.1371/journal.pone.0077033 – ident: e_1_3_2_47_2 doi: 10.3389/fmicb.2013.00254 – ident: e_1_3_2_13_2 doi: 10.1038/nature15733 – ident: e_1_3_2_35_2 doi: 10.1021/bi0610294 – ident: e_1_3_2_80_2 doi: 10.1093/nar/gku1243 – ident: e_1_3_2_68_2 doi: 10.1021/pr300709k – ident: e_1_3_2_19_2 doi: 10.1126/science.aad7154 – ident: e_1_3_2_40_2 doi: 10.1023/B:JOBB.0000019599.43969.33 – ident: e_1_3_2_67_2 doi: 10.1074/mcp.M500394-MCP200 – ident: e_1_3_2_24_2 doi: 10.1038/ismej.2013.147 – ident: e_1_3_2_65_2 doi: 10.1002/pmic.201300155 – ident: e_1_3_2_57_2 doi: 10.1038/ncomms12770 – reference: 28974619 - MBio. 2017 Oct 3;8(5): |
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| Snippet | The anaerobic oxidation of methane by anaerobic methanotrophic (ANME) archaea in syntrophic partnership with deltaproteobacterial sulfate-reducing bacteria... ABSTRACT The anaerobic oxidation of methane by anaerobic methanotrophic (ANME) archaea in syntrophic partnership with deltaproteobacterial sulfate-reducing... |
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| SubjectTerms | anaerobic oxidation of methane Anaerobiosis ANME AOM Archaea - genetics Archaea - metabolism Bacteria - genetics Bacteria - metabolism BASIC BIOLOGICAL SCIENCES Electron Transport extracellular electron transfer Genome, Archaeal Genome, Bacterial Geologic Sediments - microbiology Hydrogen - metabolism Metagenomics Methane - metabolism methane seeps multiheme cytochrome Oxidation-Reduction Phylogeny SEEP-SRB1 sulfate-reducing bacteria Sulfates - metabolism |
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| Title | Methane-Fueled Syntrophy through Extracellular Electron Transfer: Uncovering the Genomic Traits Conserved within Diverse Bacterial Partners of Anaerobic Methanotrophic Archaea |
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