The Role of Synthetic Microbial Communities (SynCom) in Sustainable Agriculture

Modern agriculture faces several challenges due to climate change, limited resources, and land degradation. Plant-associated soil microbes harbor beneficial plant growth-promoting (PGP) traits that can be used to address some of these challenges. These microbes are often formulated as inoculants for...

Full description

Saved in:
Bibliographic Details
Published inFrontiers in agronomy Vol. 4
Main Authors Shayanthan, Ambihai, Ordoñez, Patricia Ann C., Oresnik, Ivan John
Format Journal Article
LanguageEnglish
Published Frontiers Media S.A 30.06.2022
Subjects
agronomy
climate change
coculture
crop production
land degradation
microbial communities
microbiome
plant growth-promoting traits
plant microbe interaction
plant-associated microbes
rhizosphere
soil
sustainable agriculture
synthetic communities (SynCom)
Online AccessGet full text
ISSN2673-3218
2673-3218
DOI10.3389/fagro.2022.896307

Cover

Abstract Modern agriculture faces several challenges due to climate change, limited resources, and land degradation. Plant-associated soil microbes harbor beneficial plant growth-promoting (PGP) traits that can be used to address some of these challenges. These microbes are often formulated as inoculants for many crops. However, inconsistent productivity can be a problem since the performance of individual inoculants/microbes vary with environmental conditions. Over the past decade, the ability to utilize Next Generation Sequencing (NGS) approaches with soil microbes has led to an explosion of information regarding plant associated microbiomes. Although this type of work has been predominantly sequence-based and often descriptive in nature, increasingly it is moving towards microbiome functionality. The synthetic microbial communities (SynCom) approach is an emerging technique that involves co-culturing multiple taxa under well-defined conditions to mimic the structure and function of a microbiome. The SynCom approach hopes to increase microbial community stability through synergistic interactions between its members. This review will focus on plant-soil-microbiome interactions and how they have the potential to improve crop production. Current approaches in the formulation of synthetic microbial communities will be discussed, and its practical application in agriculture will be considered.
AbstractList Modern agriculture faces several challenges due to climate change, limited resources, and land degradation. Plant-associated soil microbes harbor beneficial plant growth-promoting (PGP) traits that can be used to address some of these challenges. These microbes are often formulated as inoculants for many crops. However, inconsistent productivity can be a problem since the performance of individual inoculants/microbes vary with environmental conditions. Over the past decade, the ability to utilize Next Generation Sequencing (NGS) approaches with soil microbes has led to an explosion of information regarding plant associated microbiomes. Although this type of work has been predominantly sequence-based and often descriptive in nature, increasingly it is moving towards microbiome functionality. The synthetic microbial communities (SynCom) approach is an emerging technique that involves co-culturing multiple taxa under well-defined conditions to mimic the structure and function of a microbiome. The SynCom approach hopes to increase microbial community stability through synergistic interactions between its members. This review will focus on plant-soil-microbiome interactions and how they have the potential to improve crop production. Current approaches in the formulation of synthetic microbial communities will be discussed, and its practical application in agriculture will be considered.
Author Ordoñez, Patricia Ann C.
Oresnik, Ivan John
Shayanthan, Ambihai
Author_xml – sequence: 1
  givenname: Ambihai
  surname: Shayanthan
  fullname: Shayanthan, Ambihai
– sequence: 2
  givenname: Patricia Ann C.
  surname: Ordoñez
  fullname: Ordoñez, Patricia Ann C.
– sequence: 3
  givenname: Ivan John
  surname: Oresnik
  fullname: Oresnik, Ivan John
BookMark eNp9UU1rGzEQFSWBuk5-QG97TA92R9J6tXsMpk0MKYE6PYtZaWQrrFeupD3k30exQyk9FAbmg_feMPM-sYsxjMTYZw5LKdvuq8NdDEsBQizbrpGgPrCZaJRcSMHbi7_qj-w6pWcAECsuBNQz9vi0p-pnGKgKrtq-jHlP2Zvqhzcx9B6Hah0Oh2n02VOqbgqg9F8qP1bbKWX0I_aFeruL3kxDniJdsUuHQ6Lr9zxnv75_e1rfLx4e7zbr24eFka3KC2pkzXvXtg5sB6V2PRCKFRprXOckGYtWNIAC2g7B2m5FivcKoVM91FzO2easawM-62P0B4wvOqDXp0GIO42xXDKQNracq0TT9ZLXRjZYK5DUqBLKSgFF6-asdYzh90Qp64NPhoYBRwpT0kLxVkItlChQfoaW96QUyf1ZzUG_eaFPXug3L_TZi8JR_3CMz5h9GHNEP_yH-QoNZJDB
CitedBy_id crossref_primary_10_1016_j_scitotenv_2024_173028
crossref_primary_10_3390_d16070410
crossref_primary_10_3390_plants11182392
crossref_primary_10_1016_j_scitotenv_2024_175766
crossref_primary_10_1038_s41587_023_01932_3
crossref_primary_10_1128_aem_01843_22
crossref_primary_10_3390_microorganisms12112371
crossref_primary_10_1016_j_cell_2024_07_051
crossref_primary_10_1016_j_jenvman_2024_122789
crossref_primary_10_1186_s40168_024_02026_1
crossref_primary_10_1016_j_fm_2025_104738
crossref_primary_10_3389_fpls_2022_1040515
crossref_primary_10_3390_ijms252312819
crossref_primary_10_1093_femsec_fiae027
crossref_primary_10_1016_j_scitotenv_2024_172494
crossref_primary_10_1094_PHYTO_10_22_0400_IA
crossref_primary_10_1016_j_envres_2024_118395
crossref_primary_10_1080_07388551_2025_2455607
crossref_primary_10_1016_j_stress_2024_100632
crossref_primary_10_1016_j_stress_2024_100631
crossref_primary_10_1016_j_stress_2024_100435
crossref_primary_10_1007_s10658_023_02773_1
crossref_primary_10_3390_ijms241814226
crossref_primary_10_1094_PBIOMES_12_23_0137_R
crossref_primary_10_1111_pbi_14360
crossref_primary_10_1094_PHYTO_01_23_0016_IA
crossref_primary_10_3390_microorganisms10101980
crossref_primary_10_1007_s42832_025_0297_z
crossref_primary_10_3389_fpls_2024_1332745
crossref_primary_10_1111_jam_15799
crossref_primary_10_1186_s40793_024_00624_y
crossref_primary_10_1016_j_apsoil_2025_106009
crossref_primary_10_1093_sumbio_qvae033
crossref_primary_10_1016_j_chemosphere_2024_143650
crossref_primary_10_1007_s00344_024_11297_9
crossref_primary_10_1007_s11274_024_04231_4
crossref_primary_10_1186_s40168_022_01413_w
crossref_primary_10_1080_07388551_2024_2370341
crossref_primary_10_1016_j_crmicr_2024_100285
crossref_primary_10_3390_microorganisms12122562
crossref_primary_10_3390_ijms25020750
crossref_primary_10_1016_j_xplc_2024_100812
crossref_primary_10_1128_msystems_01352_23
crossref_primary_10_1016_j_scitotenv_2024_174577
crossref_primary_10_3389_fpls_2023_1337926
crossref_primary_10_1186_s40168_024_01959_x
crossref_primary_10_1021_acssynbio_4c00116
crossref_primary_10_1007_s11274_023_03728_8
crossref_primary_10_1016_j_scitotenv_2024_175184
crossref_primary_10_2144_btn_2023_0057
crossref_primary_10_3390_ijms24043581
crossref_primary_10_1039_D4NP00052H
crossref_primary_10_1146_annurev_phyto_021021_041457
crossref_primary_10_3389_fmicb_2022_981615
crossref_primary_10_1094_PBIOMES_09_22_0062_MF
crossref_primary_10_3390_plants13121716
crossref_primary_10_3389_fmicb_2023_1167839
crossref_primary_10_1016_j_wen_2024_11_003
crossref_primary_10_3390_microorganisms11082003
crossref_primary_10_3390_jof10070452
crossref_primary_10_1016_j_crmicr_2024_100333
crossref_primary_10_1016_j_scitotenv_2025_178826
crossref_primary_10_1016_j_heliyon_2024_e33896
crossref_primary_10_1038_s41564_024_01827_2
crossref_primary_10_1016_j_jaap_2024_106851
crossref_primary_10_1007_s11274_023_03536_0
crossref_primary_10_1111_1751_7915_14550
crossref_primary_10_3389_fenvs_2024_1460099
crossref_primary_10_3390_microorganisms13010148
crossref_primary_10_1016_j_csbj_2023_10_055
crossref_primary_10_1111_1751_7915_14436
crossref_primary_10_1016_j_scitotenv_2025_178872
crossref_primary_10_3389_fmicb_2024_1401794
crossref_primary_10_3390_agronomy12092069
crossref_primary_10_3389_fmicb_2024_1473666
crossref_primary_10_1093_ismejo_wrae126
crossref_primary_10_3389_fmicb_2024_1477465
crossref_primary_10_1515_opag_2022_0392
Cites_doi 10.1371/journal.pone.0187913
10.1016/j.apsoil.2021.104184
10.1073/pnas.1800918115
10.1038/s41579-020-00446-y
10.1016/J.PBI.2017.04.018
10.1073/pnas.1900102116
10.1371/journal.pone.0160688
10.3389/fpls.2018.01197
10.1186/s42269-021-00545-7
10.1186/s40168-021-01169-9
10.1111/1462-2920.15768
10.1042/BCJ20180615
10.1016/j.tibtech.2020.04.015
10.1016/j.chom.2015.01.011
10.1016/j.ecoleng.2017.06.058
10.1111/nph.13312
10.3390/microorganisms7080269
10.3732/AJB.1300033
10.1128/mSystems.00129-17
10.1128/mBio
10.1111/ele.12630
10.1073/pnas.1912130117
10.3389/fmicb.2018.02213
10.1073/pnas.1505765112
10.3389/fpls.2017.02191
10.1016/j.molp.2019.05.006
10.1139/cjm-2016-0108
10.1038/s41596-020-00444-7
10.1093/femsec/fiw242
10.1590/0103-9016-2014-0195
10.1007/s00253-008-1567-2
10.3389/fpls.2017.00172
10.1038/s41396-019-0372-5
10.1186/s40168-019-0727-1
10.19071/jp.2016.v8.3022
10.1038/s41564-021-01014-7
10.3389/fgene.2018.00312
10.1111/1462-2920.13647
10.1038/s41477-018-0139-4
10.1016/B978-012088775-0/50003-3
10.1016/j.tplants.2017.04.008
10.1016/j.apsoil.2016.07.009
10.1111/1365-2435.12976
10.1016/j.tibtech.2018.11.002
10.1038/s41559-018-0519-1
10.1111/jipb.13073
10.1016/j.jare.2019.03.004
10.1371/journal.pbio.3000534
10.1016/j.tibtech.2018.11.011
10.3389/fmicb.2019.01779
10.1038/s41579-018-0024-1
10.1111/1751-7915.12382
10.1038/nature16192
10.1073/pnas.2021965118
10.1128/mSphere
10.1371/journal.pbio.1002352
10.1186/s12870-021-03298-7
10.1007/s42398-018-00042-0
10.1093/jxb/erp053
10.1007/978-3-319-75910-4_14
10.1023/A:1026037216893
10.1038/nature21417
10.1371/journal.pbio.2003962
10.1038/ismej.2014.251
10.1002/jobm.201000171
10.3389/fmicb.2021.747541
10.3389/fpls.2018.01473
10.1128/AEM.00040-10
10.1073/pnas.1616148114
10.3389/fmicb.2019.01142
10.1016/J.BIOTECHADV.2019.03.010
10.1111/1462-2920.14031
10.1371/journal.pone.0191218
10.3389/fmicb.2020.01361
10.1016/j.micres.2020.126639
10.1038/s41598-021-88495-y
10.1371/journal.pgen.1004283
10.1073/pnas.1820691116
10.1038/s41564-018-0129-3
10.6064/2012/963401
10.1038/s41579-020-0412-1
10.1007/BF00011685
10.1038/nrmicro3109
10.1038/s41588-017-0012-9
10.1073/pnas.1302837110
10.1038/s41396-020-00785-x
10.1007/s12275-021-0619-5
10.3389/fpls.2019.00157
10.1038/nrmicro.2017.87
10.1016/j.pbi.2016.06.017
10.1007/s00299-019-02447-5
10.3389/fpls.2014.00287
10.1111/j.1574-6941.2008.00469.x
10.1038/s41396-019-0543-4
10.1093/femsec/fiab024
10.1016/j.chom.2017.07.004
10.1038/nature11237
10.1128/AEM
10.1146/annurev-phyto-082712-102342
10.1038/ismej.2017.118
10.1111/joac.12259
10.1038/s41467-019-10882-x
10.1111/MEC.15012
10.1016/j.rhisph.2017.04.004
10.3389/fpls.2020.01179
10.1038/srep28774
10.1016/j.femsec.2004.10.007
10.1073/pnas.2100678118
10.1016/j.soilbio.2010.08.029
10.1038/ismej.2008.80
10.1016/j.mib.2014.02.002
10.3389/fmicb.2018.02573
10.1371/journal.pbio.2002860
10.1186/s40168-020-00875-0
10.1038/ncomms9493
10.1007/978-3-319-75910-4_13
10.1038/s41587-019-0104-4
10.3389/fmicb.2020.00161
10.1016/J.PEDOBI.2017.05.007
10.3389/fmicb.2020.00749
10.1016/j.chom.2015.04.009
10.1038/s41564-019-0631-2
10.1111/1365-2745.12626
10.1016/bs.aambs.2016.03.001
10.1016/j.coisb.2017.12.004
10.1038/s41467-018-07343-2
10.3389/fpls.2021.796045
10.1016/j.mib.2019.10.010
10.1093/ahr/117.4.1028
10.1007/s11274-017-2364-9
ContentType Journal Article
DBID AAYXX
CITATION
7S9
L.6
DOA
DOI 10.3389/fagro.2022.896307
DatabaseName CrossRef
AGRICOLA
AGRICOLA - Academic
DOAJ Directory of Open Access Journals
DatabaseTitle CrossRef
AGRICOLA
AGRICOLA - Academic
DatabaseTitleList
CrossRef
AGRICOLA
Database_xml – sequence: 1
  dbid: DOA
  name: DOAJ Directory of Open Access Journals
  url: https://www.doaj.org/
  sourceTypes: Open Website
DeliveryMethod fulltext_linktorsrc
Discipline Agriculture
EISSN 2673-3218
ExternalDocumentID oai_doaj_org_article_cd0257269b314c36a4703e67e677d320
10_3389_fagro_2022_896307
GroupedDBID 9T4
AAFWJ
AAHBH
AAYXX
ACXDI
AFPKN
ALMA_UNASSIGNED_HOLDINGS
CITATION
GROUPED_DOAJ
M~E
OK1
7S9
L.6
ID FETCH-LOGICAL-c387t-e6341bf88f0d90341fb0ea25acdcf9f3ecdad260a2089a0dd95e71b7a097b0413
IEDL.DBID DOA
ISSN 2673-3218
IngestDate Wed Aug 27 01:28:25 EDT 2025
Fri Jul 11 15:54:59 EDT 2025
Thu Apr 24 23:06:45 EDT 2025
Tue Jul 01 03:58:37 EDT 2025
IsDoiOpenAccess true
IsOpenAccess true
IsPeerReviewed true
IsScholarly true
Language English
LinkModel DirectLink
MergedId FETCHMERGED-LOGICAL-c387t-e6341bf88f0d90341fb0ea25acdcf9f3ecdad260a2089a0dd95e71b7a097b0413
Notes ObjectType-Article-1
SourceType-Scholarly Journals-1
ObjectType-Feature-2
content type line 23
OpenAccessLink https://doaj.org/article/cd0257269b314c36a4703e67e677d320
PQID 2718304272
PQPubID 24069
ParticipantIDs doaj_primary_oai_doaj_org_article_cd0257269b314c36a4703e67e677d320
proquest_miscellaneous_2718304272
crossref_primary_10_3389_fagro_2022_896307
crossref_citationtrail_10_3389_fagro_2022_896307
ProviderPackageCode CITATION
AAYXX
PublicationCentury 2000
PublicationDate 2022-06-30
PublicationDateYYYYMMDD 2022-06-30
PublicationDate_xml – month: 06
  year: 2022
  text: 2022-06-30
  day: 30
PublicationDecade 2020
PublicationTitle Frontiers in agronomy
PublicationYear 2022
Publisher Frontiers Media S.A
Publisher_xml – name: Frontiers Media S.A
References Baliyan (B13) 2018; 1
de Souza (B102) 2016; 6
(B35) 2015
Kaul (B53) 2018
Armanhi (B8) 2018; 8
Chai (B501) 2021; 44
Glick (B40) 2012; 2012
Lynch (B65) 1990; 129
Shelake (B100) 2019; 7
Konopka (B54) 2015; 9
Micallef (B72) 2009; 4
Bergsma-Vlami (B16) 2005; 52
Rodriguez (B91) 2019; 12
Aira (B3) 2010; 42
Santhanam (B96) 2015; 112
Finkel (B37) 2017; 38
Singh (B101) 2020; 18
Lemanceau (B58) 2017
Ryu (B94) 2020; 5
Vorholt (B115) 2017; 22
Agler (B2) 2016; 14
Abbasi (B1) 2021; 11
Banerjee (B14) 2018; 16
Andreote (B6) 2014; 71
Bulgarelli (B21) 2015; 17
Rubin (B93) 2021; 7
Durán (B34) 2021; 23
Moe (B75) 2013; 100
Pérez-Jaramillo (B506) 2019; 7
Canarini (B23) 2019; 10
Kehe (B510) 2019
Hartman (B47) 2019; 476
Walters (B118) 2018; 115
Ali (B4) 2021; 242
Wagner (B508) 2021; 118
Großkopf (B41) 2014; 18
Pfeiffer (B505) 2017; 93
Terrazas (B106) 2016; 95
Zhang (B125) 2021; 16
Lebeis (B56) 2014; 5
Chaudhary (B25) 2021; 21
Voges (B114) 2019; 116
Li (B60) 2021; 9
Chauhan (B26) 2011; 51
Oberhardt (B80) 2015; 6
Rasmann (B89) 2016; 32
Bhattacharjee (B18) 2008; 80
Vieira (B112) 2020; 14
Saleem (B95) 2018; 13
Shi (B99) 2016; 19
Rouphael (B92) 2018; 9
Geddes (B39) 2019; 10
Liu (B61) 2019; 49
Santhanam (B97) 2019; 28
Dudenhoffer (B33) 2016; 104
Chodkowski (B27) 2017; 2
Alori (B5) 2018; 9
Habiyaremye (B42) 2020; 11
Wallenstein (B117) 2017; 3
Berlanas (B17) 2019; 10
Backer (B11) 2018; 9
Toju (B503) 2020; 11
Cairns (B22) 2018; 6
Dixon (B32) 2018; 18
Levy (B59) 2018; 50
Yasmin (B122) 2016; 11
Lee (B502) 2021; 15
Hacquard (B43) 2015; 17
Oresnik (B81) 2016; 62
Vives-Peris (B113) 2020; 39
Berg (B15) 2020; 8
Philippot (B86) 2013; 11
Crecchio (B31) 2018
Bodenhausen (B20) 2014; 10
de Souza (B103) 2019; 10
Cole (B29) 2017; 15
Sharma (B98) 2018
de Souza (B104) 2020; 11
Lebeis (B509) 1979; 349
Paredes (B84) 2018; 16
Molina-Romero (B76) 2017; 12
Figueiredo dos Santos (B511) 2021; 97
Vessey (B111) 2003; 255
Bhattacharyya (B19) 2016; 8
Niu (B79) 2017; 114
Zhu (B127) 2016; 107
Toju (B107) 2018; 4
Schlatter (B507) 2020
Armanhi (B9) 2021; 12
Louca (B63) 2018; 2
Melnyk (B71) 2019; 13
Peiffer (B85) 2013; 110
Bai (B12) 2015; 528
Zhang (B126) 2020; 11
Ramirez-Villacis (B88) 2020; 5
Hawkins (B49) 2022; 12
de Vrieze (B116) 2018; 9
Astudillo-García (B10) 2017; 19
Miller (B73) 1991; 204
Finkel (B38) 2019; 17
McCarty (B66) 2019; 37
Lundberg (B64) 2012; 488
Qiu (B87) 2019; 37
Arif (B7) 2020; 38
Naylor (B78) 2017; 11
Korenblum (B55) 2020; 117
Wang (B119) 2021; 63
Teixeira (B105) 2021; 118
Liu (B62) 2018; 9
Choi (B28) 2021; 59
Compant (B30) 2019; 19
Hawkes (B48) 2007
Hart (B46) 2018; 32
Muller (B77) 2018; 8
Melillo (B70) 2012; 117
Tsunoda (B109) 2017; 65
Trivedi (B108) 2020; 18
Xue (B121) 2022; 169
McNear (B67) 2013; 4
Zarraonaindia (B504) 2015; 6
Meena (B69) 2017; 107
Reinhold-Hurek (B90) 2015; 53
Kaminsky (B52) 2019; 37
Xu (B120) 2018; 9
Haichar (B44) 2008; 2
Meena (B68) 2017; 8
Lemanceau (B57) 2017; 22
Joshi (B51) 2021; 45
Zhalnina (B123) 2018; 3
Hamonts (B45) 2018; 20
Zhang (B124) 2019; 37
Mitter (B74) 2016; 9
Vandenkoornhuyse (B110) 2015; 206
Fierer (B36) 2017; 15
van Overbeek (B83) 2008; 64
Castrillo (B24) 2017; 543
Inceoglu (B50) 2010; 76
Olanrewaju (B82) 2017; 33
References_xml – volume: 12
  year: 2017
  ident: B76
  article-title: Compatible Bacterial Mixture, Tolerant to Desiccation, Improves Maize Plant Growth
  publication-title: PLoS One
  doi: 10.1371/journal.pone.0187913
– volume: 169
  year: 2022
  ident: B121
  article-title: Land-Use Affects Soil Microbial Co-Occurrence Networks and Their Putative Functions
  publication-title: Appl. Soil Ecol.
  doi: 10.1016/j.apsoil.2021.104184
– volume: 115
  start-page: 7368
  year: 2018
  ident: B118
  article-title: Large-Scale Replicated Field Study of Maize Rhizosphere Identifies Heritable Microbes
  publication-title: Proc. Natl. Acad. Sci. U.S.A.
  doi: 10.1073/pnas.1800918115
– volume: 18
  start-page: 601
  year: 2020
  ident: B101
  article-title: Crop Microbiome and Sustainable Agriculture
  publication-title: Nat. Rev. Microbiol.
  doi: 10.1038/s41579-020-00446-y
– volume: 38
  start-page: 155
  year: 2017
  ident: B37
  article-title: Understanding and Exploiting Plant Beneficial Microbes
  publication-title: Curr. Opin. Plant Biol.
  doi: 10.1016/J.PBI.2017.04.018
– volume-title: Acad Sci USA
  year: 2019
  ident: B510
  article-title: Massively Parallel Screening of Synthetic Microbial Communities
  doi: 10.1073/pnas.1900102116
– volume: 11
  year: 2016
  ident: B122
  article-title: Plant Growth Promotion and Suppression of Bacterial Leaf Blight in Rice by Inoculated Bacteria
  publication-title: PLoS One
  doi: 10.1371/journal.pone.0160688
– volume: 9
  year: 2018
  ident: B92
  article-title: High-Throughput Plant Phenotyping for Developing Novel Biostimulants: From Lab to Field or From Field to Lab
  publication-title: Front. Plant Sci.
  doi: 10.3389/fpls.2018.01197
– volume: 45
  start-page: 83
  year: 2021
  ident: B51
  article-title: Screening and Identification of Novel Halotolerant Bacterial Strains and Assessment for Insoluble Phosphate Solubilization and IAA Production
  publication-title: Bull. Natl. Res. Cent.
  doi: 10.1186/s42269-021-00545-7
– volume: 9
  year: 2021
  ident: B60
  article-title: A Simplified Synthetic Community Rescues Astragalus Mongholicus From Root Rot Disease by Activating Plant-Induced Systemic Resistance
  publication-title: Microbiome
  doi: 10.1186/s40168-021-01169-9
– volume: 23
  year: 2021
  ident: B34
  article-title: A Fungal Powdery Mildew Pathogen Induces Extensive Local and Marginal Systemic Changes in the Arabidopsis Thaliana Microbiota
  publication-title: Environ. Microbiol
  doi: 10.1111/1462-2920.15768
– volume: 476
  start-page: 2705
  year: 2019
  ident: B47
  article-title: Interactions Between Plants and Soil Shaping the Root Microbiome Under Abiotic Stress
  publication-title: Biochem. J.
  doi: 10.1042/BCJ20180615
– volume: 38
  start-page: 1385
  year: 2020
  ident: B7
  article-title: Plant Microbiome Engineering: Expected Benefits for Improved Crop Growth and Resilience
  publication-title: Trends Biotechnol.
  doi: 10.1016/j.tibtech.2020.04.015
– volume: 17
  start-page: 392
  year: 2015
  ident: B21
  article-title: Structure and Function of the Bacterial Root Microbiota in Wild and Domesticated Barley
  publication-title: Cell Host Microbe
  doi: 10.1016/j.chom.2015.01.011
– volume: 107
  start-page: 8
  year: 2017
  ident: B69
  article-title: Plant Beneficial Rhizospheric Microorganism (PBRM) Strategies to Improve Nutrients Use Efficiency: A Review
  publication-title: Ecol. Eng.
  doi: 10.1016/j.ecoleng.2017.06.058
– volume: 206
  start-page: 196
  year: 2015
  ident: B110
  article-title: The Importance of the Microbiome of the Plant Holobiont
  publication-title: New Phytol.
  doi: 10.1111/nph.13312
– volume: 7
  year: 2019
  ident: B100
  article-title: Exploration of Plant-Microbe Interactions for Sustainable Agriculture in CRISPR Era
  publication-title: Microorganisms
  doi: 10.3390/microorganisms7080269
– volume: 100
  start-page: 1692
  year: 2013
  ident: B75
  article-title: Amino Acids in the Rhizosphere: From Plants to Microbes
  publication-title: Am. J. Bot.
  doi: 10.3732/AJB.1300033
– volume-title: Report for Policy and Decision Makers: Reaping Economic and Environmental Benefits From Sustainable Land Management
  year: 2015
  ident: B35
– volume: 2
  start-page: e00129
  year: 2017
  ident: B27
  article-title: A Synthetic Community System for Probing Microbial Interactions Driven by Exometabolites
  publication-title: mSystems
  doi: 10.1128/mSystems.00129-17
– volume: 9
  start-page: e00433
  year: 2018
  ident: B62
  article-title: A Genome-Wide Screen Identifies Genes in Rhizosphere-Associated Pseudomonas Required to Evade Plant Defenses
  publication-title: mBio
  doi: 10.1128/mBio
– volume: 19
  start-page: 926
  year: 2016
  ident: B99
  article-title: The Interconnected Rhizosphere: High Network Complexity Dominates Rhizosphere Assemblages
  publication-title: Ecol. Lett.
  doi: 10.1111/ele.12630
– volume: 117
  start-page: 3874
  year: 2020
  ident: B55
  article-title: Rhizosphere Microbiome Mediates Systemic Root Metabolite Exudation by Root-to-Root Signaling
  publication-title: Proc. Natl. Acad. Sci. U.S.A.
  doi: 10.1073/pnas.1912130117
– volume: 9
  year: 2018
  ident: B5
  article-title: Microbial Inoculants for Improving Crop Quality and Human Health in Africa
  publication-title: Front. Microbiol.
  doi: 10.3389/fmicb.2018.02213
– volume: 112
  start-page: E5013
  year: 2015
  ident: B96
  article-title: Native Root-Associated Bacteria Rescue a Plant From a Sudden-Wilt Disease That Emerged During Continuous Cropping
  publication-title: Proc. Natl. Acad. Sci. USA
  doi: 10.1073/pnas.1505765112
– volume: 8
  year: 2018
  ident: B8
  article-title: A Community-Based Culture Collection for Targeting Novel Plant Growth-Promoting Bacteria From the Sugarcane Microbiome
  publication-title: Front. Plant Sci.
  doi: 10.3389/fpls.2017.02191
– volume: 12
  start-page: 804
  year: 2019
  ident: B91
  article-title: Systems Biology of Plant-Microbiome Interactions
  publication-title: Mol. Plant
  doi: 10.1016/j.molp.2019.05.006
– volume: 62
  start-page: 1
  year: 2016
  ident: B81
  article-title: Does it Take a Community to Raise a Plant? A Summary or the Canadian Crop Microbiome Workshop
  publication-title: Can. J. Microbiol.
  doi: 10.1139/cjm-2016-0108
– volume: 16
  start-page: 988
  year: 2021
  ident: B125
  article-title: High-Throughput Cultivation and Identification of Bacteria From the Plant Root Microbiota
  publication-title: Nat. Protoc.
  doi: 10.1038/s41596-020-00444-7
– volume: 93
  start-page: 1
  year: 2017
  ident: B505
  article-title: Rhizosphere Microbiomes of Potato Cultivated in the High Andes Show Stable and Dynamic Core Microbiomes With Different Responses to Plant Development
  publication-title: FEMS Microbiol. Ecol.
  doi: 10.1093/femsec/fiw242
– volume: 71
  start-page: 528
  year: 2014
  ident: B6
  article-title: Exploring Interactions of Plant Microbiomes
  publication-title: Sci. Agric.
  doi: 10.1590/0103-9016-2014-0195
– volume: 80
  start-page: 199
  year: 2008
  ident: B18
  article-title: Use of Nitrogen-Fixing Bacteria as Biofertiliser for non-Legumes: Prospects and Challenges
  publication-title: Appl. Microbiol. Biotechnol.
  doi: 10.1007/s00253-008-1567-2
– volume: 8
  year: 2017
  ident: B68
  article-title: Abiotic Stress Responses and Microbe-Mediated Mitigation in Plants: The Omics Strategies
  publication-title: Front. Plant Sci.
  doi: 10.3389/fpls.2017.00172
– volume: 13
  start-page: 1575
  year: 2019
  ident: B71
  article-title: Convergent Gain and Loss of Genomic Islands Drive Lifestyle Changes in Plant-Associated Pseudomonas
  publication-title: ISME J.
  doi: 10.1038/s41396-019-0372-5
– volume: 7
  start-page: 114
  year: 2019
  ident: B506
  article-title: Deciphering Rhizosphere Microbiome Assembly of Wild and Modern Common Bean (Phaseolus Vulgaris) in Native and Agricultural Soils From Colombia
  publication-title: Microbiome
  doi: 10.1186/s40168-019-0727-1
– volume: 8
  start-page: 26
  year: 2016
  ident: B19
  article-title: Perspective of Beneficial Microbes in Agriculture Under Changing Climatic Scenario: A Review
  publication-title: J. Phytol.
  doi: 10.19071/jp.2016.v8.3022
– volume: 7
  start-page: 34
  year: 2021
  ident: B93
  article-title: Species-And Site-Specific Genome Editing in Complex Bacterial Communities
  publication-title: Nat. Microbiol.
  doi: 10.1038/s41564-021-01014-7
– volume: 6
  year: 2018
  ident: B22
  article-title: Construction and Characterization of Synthetic Bacterial Community for Experimental Ecology and Evolution
  publication-title: Front. Genet.
  doi: 10.3389/fgene.2018.00312
– volume: 19
  start-page: 1450
  year: 2017
  ident: B10
  article-title: Evaluating the Core Microbiota in Complex Communities: A Systematic Investigation
  publication-title: Environ. Microbiol.
  doi: 10.1111/1462-2920.13647
– volume: 4
  start-page: 247
  year: 2018
  ident: B107
  article-title: Core Microbiomes for Sustainable Agroecosystems
  publication-title: Nat. Plants
  doi: 10.1038/s41477-018-0139-4
– start-page: 1
  volume-title: The Rhizosphere: An Ecological Perspective
  year: 2007
  ident: B48
  article-title: Root Interactions With Soil Microbial Communities and Processes
  doi: 10.1016/B978-012088775-0/50003-3
– volume: 22
  start-page: 583
  year: 2017
  ident: B57
  article-title: Let the Core Microbiota be Functional
  publication-title: Trends Plant Sci.
  doi: 10.1016/j.tplants.2017.04.008
– volume: 107
  start-page: 324
  year: 2016
  ident: B127
  article-title: Nitrogen Fertilizer Rate Affects Root Exudation, the Rhizosphere Microbiome and Nitrogen-Use-Efficiency of Maize
  publication-title: Appl. Soil Ecol.
  doi: 10.1016/j.apsoil.2016.07.009
– volume: 32
  start-page: 126
  year: 2018
  ident: B46
  article-title: Fungal Inoculants in the Field: Is the Reward Greater Than the Risk
  publication-title: Funct. Ecol.
  doi: 10.1111/1365-2435.12976
– volume: 37
  start-page: 181
  year: 2019
  ident: B66
  article-title: Synthetic Biology Tools to Engineer Microbial Communities for Biotechnology
  publication-title: Trends Biotechnol.
  doi: 10.1016/j.tibtech.2018.11.002
– volume: 2
  start-page: 936
  year: 2018
  ident: B63
  article-title: Function and Functional Redundancy in Microbial Systems
  publication-title: Nat. Ecol. Evol.
  doi: 10.1038/s41559-018-0519-1
– volume: 63
  start-page: 1021
  year: 2021
  ident: B119
  article-title: Functional Assembly of Root-Associated Microbial Consortia Improves Nutrient Efficiency and Yield in Soybean
  publication-title: J. Integr. Plant Biol.
  doi: 10.1111/jipb.13073
– volume: 19
  start-page: 29
  year: 2019
  ident: B30
  article-title: A Review on the Plant Microbiome: Ecology, Functions, and Emerging Trends in Microbial Application
  publication-title: J. Adv. Res.
  doi: 10.1016/j.jare.2019.03.004
– volume: 17
  year: 2019
  ident: B38
  article-title: The Effects of Soil Phosphorus Content on Plant Microbiota are Driven by the Plant Phosphate Starvation Response
  publication-title: PloS Biol.
  doi: 10.1371/journal.pbio.3000534
– volume: 37
  start-page: 140
  year: 2019
  ident: B52
  article-title: The Inherent Conflicts in Developing Soil Microbial Inoculants
  publication-title: Trends Biotechnol.
  doi: 10.1016/j.tibtech.2018.11.011
– volume: 10
  year: 2019
  ident: B103
  article-title: Genome Sequences of a Plant Beneficial Synthetic Bacterial Community Reveal Genetic Features for Successful Plant Colonization
  publication-title: Front. Microbiol.
  doi: 10.3389/fmicb.2019.01779
– volume: 16
  start-page: 567
  year: 2018
  ident: B14
  article-title: Keystone Taxa as Drivers of Microbiome Structure and Functioning
  publication-title: Nat. Rev. Microbiol.
  doi: 10.1038/s41579-018-0024-1
– volume: 9
  start-page: 635
  year: 2016
  ident: B74
  article-title: Plant-Microbe Partnerships in 2020
  publication-title: Microb. Biotechnol.
  doi: 10.1111/1751-7915.12382
– volume: 528
  start-page: 364
  year: 2015
  ident: B12
  article-title: Functional Overlap of the Arabidopsis Leaf and Root Microbiota
  publication-title: Nature
  doi: 10.1038/nature16192
– volume: 118
  year: 2021
  ident: B508
  article-title: Microbe-Dependent Heterosis in Maize
  publication-title: Proc Natl Acad Sci USA
  doi: 10.1073/pnas.2021965118
– volume: 5
  year: 2020
  ident: B88
  article-title: Root Microbiome Modulates Plant Growth Promotion Induced by Low Doses of Glyphosate
  publication-title: mSphere
  doi: 10.1128/mSphere
– volume: 14
  year: 2016
  ident: B2
  article-title: Microbial Hub Taxa Link Host and Abiotic Factors to Plant Microbiome Variation
  publication-title: PloS Biol.
  doi: 10.1371/journal.pbio.1002352
– volume: 21
  start-page: 512
  year: 2021
  ident: B25
  article-title: Impact of Nanophos in Agriculture to Improve Functional Bacterial Community and Crop Productivity
  publication-title: BMC Plant Biol.
  doi: 10.1186/s12870-021-03298-7
– volume: 1
  start-page: 461
  year: 2018
  ident: B13
  article-title: Rhizobacteria Isolated Under Field First Strategy Improved Chickpea Growth and Productivity
  publication-title: J. Environ. Sustain.
  doi: 10.1007/s42398-018-00042-0
– volume: 4
  start-page: 777
  year: 2009
  ident: B72
  article-title: Plant Age and Genotype Impact the Progression of Bacterial Community Succession in the Arabidopsis Rhizosphere
  publication-title: Plant Signal. Behav.
  doi: 10.1093/jxb/erp053
– volume: 44
  year: 2021
  ident: B501
  article-title: High-Resolution Phenotyping of Sorghum Genotypic and Phenotypic Responses to Low Nitrogen and Synthetic Microbial Communities
  publication-title: Plant Cell and Environment
  doi: 10.1186/s12870-021-03298-7
– start-page: 341
  volume-title: Root Biology
  year: 2018
  ident: B53
  article-title: Unfolding the Role of Rhizomicrobiome Toward Sustainable Agriculture
  doi: 10.1007/978-3-319-75910-4_14
– volume: 255
  start-page: 571
  year: 2003
  ident: B111
  article-title: Plant Growth Promoting Rhizobacteria as Biofertilizers
  publication-title: Plant Soil
  doi: 10.1023/A:1026037216893
– volume: 543
  start-page: 513
  year: 2017
  ident: B24
  article-title: Root Microbiota Drive Direct Integration of Phosphate Stress and Immunity
  publication-title: Nature
  doi: 10.1038/nature21417
– volume: 16
  year: 2018
  ident: B84
  article-title: Design of Synthetic Bacterial Communities for Predictable Plant Phenotypes
  publication-title: PloS Biol.
  doi: 10.1371/journal.pbio.2003962
– volume: 9
  start-page: 1488
  year: 2015
  ident: B54
  article-title: Dynamics in Microbial Communities: Unraveling Mechanisms to Identify Principles
  publication-title: ISME J.
  doi: 10.1038/ismej.2014.251
– volume: 51
  start-page: 15
  year: 2011
  ident: B26
  article-title: Uncultured Bacterial Diversity in Tropical Maize (Zea Mays L.).Rhizosphere
  publication-title: J. Basic Microbiol.
  doi: 10.1002/jobm.201000171
– volume: 12
  year: 2021
  ident: B9
  article-title: Modulating Drought Stress Response of Maize by a Synthetic Bacterial Community
  publication-title: Front. Microbiol.
  doi: 10.3389/fmicb.2021.747541
– volume: 9
  year: 2018
  ident: B11
  article-title: Plant Growth-Promoting Rhizobacteria: Context, Mechanisms of Action, and Roadmap to Commercialization of Biostimulants for Sustainable Agriculture
  publication-title: Front. Plant Sci.
  doi: 10.3389/fpls.2018.01473
– volume: 76
  start-page: 3675
  year: 2010
  ident: B50
  article-title: Effects of Plant Genotype and Growth Stage on the Betaproteobacterial Communities Associated With Different Potato Cultivars in Two Fields
  publication-title: Appl. Environ. Microbiol.
  doi: 10.1128/AEM.00040-10
– volume: 114
  start-page: E2450
  year: 2017
  ident: B79
  article-title: Simplified and Representative Bacterial Community of Maize Roots
  publication-title: Proc. Natl. Acad. Sci. U.S.A.
  doi: 10.1073/pnas.1616148114
– volume: 10
  year: 2019
  ident: B17
  article-title: The Fungal and Bacterial Rhizosphere Microbiome Associated With Grapevine Rootstock Genotypes in Mature and Young Vineyards
  publication-title: Front. Microbiol.
  doi: 10.3389/fmicb.2019.01142
– volume: 37
  start-page: 107371
  year: 2019
  ident: B87
  article-title: New Frontiers in Agriculture Productivity: Optimised Microbial Inoculants and in Situ Microbiome Engineering
  publication-title: Biotechnol. Adv.
  doi: 10.1016/J.BIOTECHADV.2019.03.010
– volume: 20
  start-page: 124
  year: 2018
  ident: B45
  article-title: Field Study Reveals Core Plant Microbiota and Relative Importance of Their Drivers
  publication-title: Environ. Microbiol.
  doi: 10.1111/1462-2920.14031
– volume: 13
  year: 2018
  ident: B95
  article-title: Drought Response of Mucuna Pruriens (L.) DC. Inoculated With ACC Deaminase and IAA Producing Rhizobacteria
  publication-title: PLoS One
  doi: 10.1371/journal.pone.0191218
– volume: 11
  year: 2020
  ident: B503
  article-title: Scoring Species for Synthetic Community Design: Network Analyses of Functional Core Microbiomes
  publication-title: Front Microbiol
  doi: 10.3389/fmicb.2020.01361
– volume: 242
  year: 2021
  ident: B4
  article-title: Maize Endophytic Microbial-Communities Revealed by Removing PCR and 16S rRNA Sequencing and Their Synthetic Applications to Suppress Maize Banded Leaf and Sheath Blight
  publication-title: Microbiol. Res.
  doi: 10.1016/j.micres.2020.126639
– volume: 11
  start-page: 9317
  year: 2021
  ident: B1
  article-title: Streptomyces Strains Modulate Dynamics of Soil Bacterial Communities and Their Efficacy in Disease Suppression Caused by Phytophthora Capsici
  publication-title: Sci. Rep.
  doi: 10.1038/s41598-021-88495-y
– volume: 10
  year: 2014
  ident: B20
  article-title: A Synthetic Community Approach Reveals Plant Genotypes Affecting the Phyllosphere Microbiota
  publication-title: PLoS Genet.
  doi: 10.1371/journal.pgen.1004283
– volume: 116
  start-page: 12558
  year: 2019
  ident: B114
  article-title: Plant-Derived Coumarins Shape the Composition of an Arabidopsis Synthetic Root Microbiome
  publication-title: Proc. Natl. Acad. Sci. U. S. A.
  doi: 10.1073/pnas.1820691116
– volume: 6
  year: 2015
  ident: B504
  article-title: The Soil Microbiome Influences Grapevine-Associated Microbiota
  publication-title: mBio
  doi: 10.1038/s41564-018-0129-3
– volume: 2012
  start-page: 963401
  year: 2012
  ident: B40
  article-title: Plant Growth-Promoting Bacteria: Mechanisms and Applications
  publication-title: Scientifica
  doi: 10.6064/2012/963401
– volume: 18
  start-page: 607
  year: 2020
  ident: B108
  article-title: Plant-Microbiome Interactions: From Community Assembly to Plant Health
  publication-title: Nat. Rev. Microbiol.
  doi: 10.1038/s41579-020-0412-1
– volume: 3
  start-page: 470
  year: 2018
  ident: B123
  article-title: Dynamic Root Exudate Chemistry and Microbial Substrate Preferences Drive Patterns in Rhizosphere Microbial Community Assembly
  publication-title: Nat. Microbiol.
  doi: 10.1038/s41564-018-0129-3
– volume: 129
  start-page: 1
  year: 1990
  ident: B65
  article-title: Substrate Flow in the Rhizosphere
  publication-title: Plant Soil
  doi: 10.1007/BF00011685
– volume: 11
  start-page: 789
  year: 2013
  ident: B86
  article-title: Going Back to the Roots: The Microbial Ecology of the Rhizosphere
  publication-title: Nat. Rev. Microbiol.
  doi: 10.1038/nrmicro3109
– volume: 50
  start-page: 138
  year: 2018
  ident: B59
  article-title: Genomic Features of Bacterial Adaptation to Plants
  publication-title: Nat. Genet.
  doi: 10.1038/s41588-017-0012-9
– volume: 110
  start-page: 6548
  year: 2013
  ident: B85
  article-title: Diversity and Heritability of the Maize Rhizosphere Microbiome Under Field Conditions
  publication-title: Proc. Natl. Acad. Sci. U.S.A.
  doi: 10.1073/pnas.1302837110
– volume: 15
  year: 2021
  ident: B502
  article-title: Disruption of Firmicutes and Actinobacteria Abundance in Tomato Rhizosphere Causes the Incidence of Bacterial Wilt Disease
  publication-title: ISME J
  doi: 10.1038/s41396-020-00785-x
– volume: 59
  start-page: 281
  year: 2021
  ident: B28
  article-title: Dissection of Plant Microbiota and Plant-Microbiome Interactions
  publication-title: J. Microbiol.
  doi: 10.1007/s12275-021-0619-5
– volume: 4
  start-page: 1
  year: 2013
  ident: B67
  article-title: The Rhizosphere-Roots, Soil and Everything in Between
  publication-title: Nat. Educ. Knowl.
– volume: 10
  year: 2019
  ident: B23
  article-title: Root Exudation of Primary Metabolites: Mechanisms and Their Roles in Plant Responses to Environmental Stimuli
  publication-title: Front. Plant Sci.
  doi: 10.3389/fpls.2019.00157
– volume: 15
  start-page: 579
  year: 2017
  ident: B36
  article-title: Embracing the Unknown: Disentangling the Complexities of the Soil Microbiome
  publication-title: Nat. Rev. Microbiol.
  doi: 10.1038/nrmicro.2017.87
– volume: 32
  start-page: 62
  year: 2016
  ident: B89
  article-title: Root Signals That Mediate Mutualistic Interactions in the Rhizosphere
  publication-title: Curr. Opin. Plant Biol.
  doi: 10.1016/j.pbi.2016.06.017
– volume: 39
  start-page: 3
  year: 2020
  ident: B113
  article-title: Root Exudates: From Plant to Rhizosphere and Beyond
  publication-title: Plant Cell Rep.
  doi: 10.1007/s00299-019-02447-5
– volume: 5
  year: 2014
  ident: B56
  article-title: The Potential for Give and Take in Plant-Microbiome Relationships
  publication-title: Front. Plant Sci.
  doi: 10.3389/fpls.2014.00287
– volume: 64
  start-page: 283
  year: 2008
  ident: B83
  article-title: Effects of Plant Genotype and Growth Stage on the Structure of Bacterial Communities Associated With Potato (Solanum Tuberosum L.)
  publication-title: FEMS Microbiol. Ecol.
  doi: 10.1111/j.1574-6941.2008.00469.x
– volume: 14
  start-page: 463
  year: 2020
  ident: B112
  article-title: Drivers of the Composition of Active Rhizosphere Bacterial Communities in Temperate Grasslands
  publication-title: ISME J.
  doi: 10.1038/s41396-019-0543-4
– volume: 97
  year: 2021
  ident: B511
  article-title: Insights Into the Structure and Role of Seed-Borne Bacteriome During Maize Germination
  publication-title: FEMS Microbiol Ecol.
  doi: 10.1093/femsec/fiab024
– start-page: 443
  volume-title: Sustainable Agriculture Reviews
  year: 2018
  ident: B31
  article-title: Beneficial Soil Microbiome for Sustainable Agriculture Production
– volume: 22
  start-page: 142
  year: 2017
  ident: B115
  article-title: Establishing Causality: Opportunities of Synthetic Communities for Plant Microbiome Research
  publication-title: Cell Host Microbe
  doi: 10.1016/j.chom.2017.07.004
– volume: 488
  start-page: 86
  year: 2012
  ident: B64
  article-title: Defining the Core Arabidopsis thaliana Root Microbiome
  publication-title: Nature
  doi: 10.1038/nature11237
– year: 2020
  ident: B507
  article-title: Core Rhizosphere Microbiomes of Dryland Wheat Are Influenced by Location and Land Use History
  doi: 10.1128/AEM
– volume: 53
  start-page: 403
  year: 2015
  ident: B90
  article-title: Roots Shaping Their Microbiome: Global Hotspots for Microbial Activity
  publication-title: Annu. Rev. Phytopathol.
  doi: 10.1146/annurev-phyto-082712-102342
– volume: 349
  year: 1979
  ident: B509
  article-title: Salicylic Acid Modulates Colonization of the Root Microbiome by Specific Bacterial Taxa
  publication-title: Science
– volume: 11
  start-page: 2691
  year: 2017
  ident: B78
  article-title: Drought and Host Selection Influence Bacterial Community Dynamics in the Grass Root Microbiome
  publication-title: ISME J.
  doi: 10.1038/ismej.2017.118
– volume: 18
  start-page: 768
  year: 2018
  ident: B32
  article-title: Chemical Fertilizer in Transformations in World Agriculture and the State System 1870 to Interwar Period
  publication-title: J. Agrar. Change
  doi: 10.1111/joac.12259
– volume: 10
  start-page: 3430
  year: 2019
  ident: B39
  article-title: Engineering Transkingdom Signalling in Plants to Control Gene Expression in Rhizosphere Bacteria
  publication-title: Nat. Commun.
  doi: 10.1038/s41467-019-10882-x
– volume: 28
  start-page: 1154
  year: 2019
  ident: B97
  article-title: A Suite of Complementary Biocontrol Traits Allows a Native Consortium of Root-Associated Bacteria to Protect Their Host Plant From a Fungal Sudden-Wilt Disease
  publication-title: Mol. Ecol.
  doi: 10.1111/MEC.15012
– volume: 3
  start-page: 230
  year: 2017
  ident: B117
  article-title: Managing and Manipulating the Rhizosphere Microbiome for Plant Health: A Systems Approach
  publication-title: Rhizosphere
  doi: 10.1016/j.rhisph.2017.04.004
– volume: 11
  year: 2020
  ident: B104
  article-title: From Microbiome to Traits: Designing Synthetic Microbial Communities for Improved Crop Resiliency
  publication-title: Front. Plant Sci.
  doi: 10.3389/fpls.2020.01179
– volume: 204
  start-page: 3
  year: 1991
  ident: B73
  article-title: Bacterial Genetic Systems
  publication-title: Methods Enzymol.
– volume: 6
  year: 2016
  ident: B102
  article-title: Unlocking the Bacterial and Fungal Communities Assemblages of Sugarcane Microbiome
  publication-title: Sci. Rep.
  doi: 10.1038/srep28774
– volume: 52
  start-page: 59
  year: 2005
  ident: B16
  article-title: Influence of Plant Species on Population Dynamics, Genotypic Diversity and Antibiotic Production in the Rhizosphere by Indigenous Pseudomonas Spp
  publication-title: FEMS Microbiol. Ecol.
  doi: 10.1016/j.femsec.2004.10.007
– volume: 118
  year: 2021
  ident: B105
  article-title: Specific Modulation of the Root Immune System by a Community of Commensal Bacteria
  publication-title: Proc. Natl. Acad. Sci. U. S. A.
  doi: 10.1073/pnas.2100678118
– volume: 42
  start-page: 2276
  year: 2010
  ident: B3
  article-title: Plant Genotype Strongly Modifies the Structure and Growth of Maize Rhizosphere Microbial Communities
  publication-title: Soil Biol. Biochem.
  doi: 10.1016/j.soilbio.2010.08.029
– volume: 2
  start-page: 1221
  year: 2008
  ident: B44
  article-title: Plant Host Habitat and Root Exudates Shape Soil Bacterial Community Structure
  publication-title: ISME J.
  doi: 10.1038/ismej.2008.80
– volume: 18
  start-page: 72
  year: 2014
  ident: B41
  article-title: Synthetic Microbial Communities
  publication-title: Curr. Opin. Microbiol.
  doi: 10.1016/j.mib.2014.02.002
– volume: 9
  year: 2018
  ident: B116
  article-title: Combining Different Potato-Associated Pseudomonas Strains for Improved Biocontrol of Phytophthora Infestans
  publication-title: Front. Microbiol.
  doi: 10.3389/fmicb.2018.02573
– volume: 15
  year: 2017
  ident: B29
  article-title: Genome-Wide Identification of Bacterial Plant Colonization Genes
  publication-title: PloS Biol.
  doi: 10.1371/journal.pbio.2002860
– volume: 8
  start-page: 103
  year: 2020
  ident: B15
  article-title: Microbiome Definition Re-Visited: Old Concepts and New Challenges
  publication-title: Microbiome
  doi: 10.1186/s40168-020-00875-0
– volume: 6
  start-page: 8493
  year: 2015
  ident: B80
  article-title: Harnessing the Landscape of Microbial Culture Media to Predict New Organism-Media Pairings
  publication-title: Nat. Commun.
  doi: 10.1038/ncomms9493
– start-page: 323
  volume-title: Root Biology
  year: 2018
  ident: B98
  article-title: Root–microbe Interactions: Understanding and Exploitation of Microbiome
  doi: 10.1007/978-3-319-75910-4_13
– volume: 37
  start-page: 676
  year: 2019
  ident: B124
  article-title: NRT1.1B is Associated With Root Microbiota Composition and Nitrogen Use in Field-Grown Rice
  publication-title: Nat. Biotechnol.
  doi: 10.1038/s41587-019-0104-4
– volume: 11
  year: 2020
  ident: B126
  article-title: Rhizosphere Microbial Community Structure is Selected by Habitat But Not Plant Species in Two Tropical Seagrass Beds
  publication-title: Front. Microbiol.
  doi: 10.3389/fmicb.2020.00161
– volume: 65
  start-page: 58
  year: 2017
  ident: B109
  article-title: Root Chemical Traits and Their Roles in Belowground Biotic Interactions
  publication-title: Pedobiologia
  doi: 10.1016/J.PEDOBI.2017.05.007
– volume: 11
  year: 2020
  ident: B42
  article-title: Tree Root Zone Microbiome: Exploring the Magnitude of Environmental Conditions and Host Tree Impact
  publication-title: Front. Microbiol.
  doi: 10.3389/fmicb.2020.00749
– volume: 17
  start-page: 603
  year: 2015
  ident: B43
  article-title: Microbiota and Host Nutrition Across Plant and Animal Kingdoms
  publication-title: Cell Host Microbe
  doi: 10.1016/j.chom.2015.04.009
– volume: 5
  start-page: 314
  year: 2020
  ident: B94
  article-title: Control of Nitrogen Fixation in Bacteria That Associate With Cereals
  publication-title: Nat. Microbiol.
  doi: 10.1038/s41564-019-0631-2
– volume: 104
  start-page: 1566
  year: 2016
  ident: B33
  article-title: Systemic Enrichment of Antifungal Traits in the Rhizosphere Microbiome After Pathogen Attack
  publication-title: J. Ecol.
  doi: 10.1111/1365-2745.12626
– volume: 95
  start-page: 1
  year: 2016
  ident: B106
  article-title: Plant Microbiota Interactions as a Driver of the Mineral Turnover in the Rhizosphere
  publication-title: Adv. Appl. Microbiol.
  doi: 10.1016/bs.aambs.2016.03.001
– volume: 8
  start-page: 73
  year: 2018
  ident: B77
  article-title: Using Metabolic Networks to Resolve Ecological Properties of Microbiomes
  publication-title: Curr. Opin. Syst. Biol.
  doi: 10.1016/j.coisb.2017.12.004
– volume: 9
  year: 2018
  ident: B120
  article-title: The Structure and Function of the Global Citrus Rhizosphere Microbiome
  publication-title: Nat. Commun.
  doi: 10.1038/s41467-018-07343-2
– volume: 12
  year: 2022
  ident: B49
  article-title: The Rhizobium-Legume Symbiosis: Co-Opting Successful Stress Management
  publication-title: Front. Plant Sci.
  doi: 10.3389/fpls.2021.796045
– start-page: 101
  volume-title: Adv Bot Res
  year: 2017
  ident: B58
  article-title: Plant Communication With Associated Microbiota in the Spermosphere, Rhizosphere and Phyllosphere
– volume: 49
  start-page: 97
  year: 2019
  ident: B61
  article-title: Reductionist Synthetic Community Approaches in Root Microbiome Research
  publication-title: Curr. Opin. Microbiol.
  doi: 10.1016/j.mib.2019.10.010
– volume: 117
  start-page: 1028
  year: 2012
  ident: B70
  article-title: The First Green Revolution: Debt Peonage and the Making of the Nitrogen Fertilizer Trade 1840–1930
  publication-title: Am. Hist. Rev.
  doi: 10.1093/ahr/117.4.1028
– volume: 33
  start-page: 197
  year: 2017
  ident: B82
  article-title: Mechanisms of Action of Plant Growth Promoting Bacteria
  publication-title: World J. Microbiol. Biotechnol.
  doi: 10.1007/s11274-017-2364-9
SSID ssj0002512204
Score 2.5041406
SecondaryResourceType review_article
Snippet Modern agriculture faces several challenges due to climate change, limited resources, and land degradation. Plant-associated soil microbes harbor beneficial...
SourceID doaj
proquest
crossref
SourceType Open Website
Aggregation Database
Enrichment Source
Index Database
SubjectTerms agronomy
climate change
coculture
crop production
land degradation
microbial communities
microbiome
plant growth-promoting traits
plant microbe interaction
plant-associated microbes
rhizosphere
soil
sustainable agriculture
synthetic communities (SynCom)
Title The Role of Synthetic Microbial Communities (SynCom) in Sustainable Agriculture
URI https://www.proquest.com/docview/2718304272
https://doaj.org/article/cd0257269b314c36a4703e67e677d320
Volume 4
hasFullText 1
inHoldings 1
isFullTextHit
isPrint
link http://utb.summon.serialssolutions.com/2.0.0/link/0/eLvHCXMwrV3dS8MwEA_ikz6Inzi_iOCDCnVp2jXJ45SNIUzBOdhbyOcYjE7m9uCLf7uXtpsFQV-EUtr00oa7JHfX5H6H0BUT3mpFWlEmFI1Sa2FIcW4iqhU1Xlt4GIKT-09Zb5g-jlqjWqqvsCeshAcuGdc0FrQyo5nQSZyaJFMp9FGXMTiYTWjhrYPOqzlTYQ4OWpuStFzGBC9MNL0az0OwH6V3HDpdSB9bU0QFXv-P6bjQMd1dtFMZh7hdNmoPbbh8H223x_MKIMMdoGeQK36ZTR2eeTz4yMF-A2LcnxSASlC5ivgIOKn4Ggjg_gZPcjz4jpTCtTceomG38_rQi6qkCJFJOFtELgO9oz3nnlhB4Npr4hRtKWONFz5xxioLToqihAtFrBUtx2LNFBFME1BZR2gzn-XuGGEoS-PYGqJZkgYcem6oURoMQrA5DDcNRFYckqZCDA-JK6YSPIfAVFkwVQamypKpDXS7rvJWwmX8Rnwf2L4mDEjXRQHIX1byl3_Jv4EuV0KTMDLCcofK3Wz5Limo3fCzhtGT__jQKdoKbS_3Cp6hzcV86c7BIFnoi6Lvwbn_2fkCseTd3Q
linkProvider Directory of Open Access Journals
openUrl ctx_ver=Z39.88-2004&ctx_enc=info%3Aofi%2Fenc%3AUTF-8&rfr_id=info%3Asid%2Fsummon.serialssolutions.com&rft_val_fmt=info%3Aofi%2Ffmt%3Akev%3Amtx%3Ajournal&rft.genre=article&rft.atitle=The+Role+of+Synthetic+Microbial+Communities+%28SynCom%29+in+Sustainable+Agriculture&rft.jtitle=Frontiers+in+agronomy&rft.au=Shayanthan%2C+Ambihai&rft.au=Ordo%C3%B1ez%2C+Patricia+Ann+C.&rft.au=Oresnik%2C+Ivan+John&rft.date=2022-06-30&rft.issn=2673-3218&rft.eissn=2673-3218&rft.volume=4&rft_id=info:doi/10.3389%2Ffagro.2022.896307&rft.externalDBID=n%2Fa&rft.externalDocID=10_3389_fagro_2022_896307
thumbnail_l http://covers-cdn.summon.serialssolutions.com/index.aspx?isbn=/lc.gif&issn=2673-3218&client=summon
thumbnail_m http://covers-cdn.summon.serialssolutions.com/index.aspx?isbn=/mc.gif&issn=2673-3218&client=summon
thumbnail_s http://covers-cdn.summon.serialssolutions.com/index.aspx?isbn=/sc.gif&issn=2673-3218&client=summon