Transcriptional Response to Acute Thermal Exposure in Juvenile Chinook Salmon Determined by RNAseq

Thermal exposure is a serious and growing challenge facing fish species worldwide. Chinook salmon (Oncorhynchus tshawytscha) living in the southern portion of their native range are particularly likely to encounter warmer water due to a confluence of factors. River alterations have increased the lik...

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Published inG3 : genes - genomes - genetics Vol. 5; no. 7; pp. 1335 - 1349
Main Authors Tomalty, Katharine M H, Meek, Mariah H, Stephens, Molly R, Rincón, Gonzalo, Fangue, Nann A, May, Bernie P, Baerwald, Melinda R
Format Journal Article
LanguageEnglish
Published United States Genetics Society of America 24.04.2015
Subjects
Animals
Down-Regulation
Fish Proteins - genetics
Gills - metabolism
Investigations
Protein Denaturation
RNA - chemistry
RNA - genetics
RNA - metabolism
Salmon - genetics
Salmon - growth & development
Salmon - metabolism
Sequence Analysis, RNA
Temperature
Transcriptome
Up-Regulation
thermal tolerance
Oncorhynchus tshawytscha
gene discovery
Illumina
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Abstract Thermal exposure is a serious and growing challenge facing fish species worldwide. Chinook salmon (Oncorhynchus tshawytscha) living in the southern portion of their native range are particularly likely to encounter warmer water due to a confluence of factors. River alterations have increased the likelihood that juveniles will be exposed to warm water temperatures during their freshwater life stage, which can negatively impact survival, growth, and development and pose a threat to dwindling salmon populations. To better understand how acute thermal exposure affects the biology of salmon, we performed a transcriptional analysis of gill tissue from Chinook salmon juveniles reared at 12° and exposed acutely to water temperatures ranging from ideal to potentially lethal (12° to 25°). Reverse-transcribed RNA libraries were sequenced on the Illumina HiSeq2000 platform and a de novo reference transcriptome was created. Differentially expressed transcripts were annotated using Blast2GO and relevant gene clusters were identified. In addition to a high degree of downregulation of a wide range of genes, we found upregulation of genes involved in protein folding/rescue, protein degradation, cell death, oxidative stress, metabolism, inflammation/immunity, transcription/translation, ion transport, cell cycle/growth, cell signaling, cellular trafficking, and structure/cytoskeleton. These results demonstrate the complex multi-modal cellular response to thermal stress in juvenile salmon.
AbstractList Thermal exposure is a serious and growing challenge facing fish species worldwide. Chinook salmon ( Oncorhynchus tshawytscha ) living in the southern portion of their native range are particularly likely to encounter warmer water due to a confluence of factors. River alterations have increased the likelihood that juveniles will be exposed to warm water temperatures during their freshwater life stage, which can negatively impact survival, growth, and development and pose a threat to dwindling salmon populations. To better understand how acute thermal exposure affects the biology of salmon, we performed a transcriptional analysis of gill tissue from Chinook salmon juveniles reared at 12° and exposed acutely to water temperatures ranging from ideal to potentially lethal (12° to 25°). Reverse-transcribed RNA libraries were sequenced on the Illumina HiSeq2000 platform and a de novo reference transcriptome was created. Differentially expressed transcripts were annotated using Blast2GO and relevant gene clusters were identified. In addition to a high degree of downregulation of a wide range of genes, we found upregulation of genes involved in protein folding/rescue, protein degradation, cell death, oxidative stress, metabolism, inflammation/immunity, transcription/translation, ion transport, cell cycle/growth, cell signaling, cellular trafficking, and structure/cytoskeleton. These results demonstrate the complex multi-modal cellular response to thermal stress in juvenile salmon.
Thermal exposure is a serious and growing challenge facing fish species worldwide. Chinook salmon (Oncorhynchus tshawytscha) living in the southern portion of their native range are particularly likely to encounter warmer water due to a confluence of factors. River alterations have increased the likelihood that juveniles will be exposed to warm water temperatures during their freshwater life stage, which can negatively impact survival, growth, and development and pose a threat to dwindling salmon populations. To better understand how acute thermal exposure affects the biology of salmon, we performed a transcriptional analysis of gill tissue from Chinook salmon juveniles reared at 12° and exposed acutely to water temperatures ranging from ideal to potentially lethal (12° to 25°). Reverse-transcribed RNA libraries were sequenced on the Illumina HiSeq2000 platform and a de novo reference transcriptome was created. Differentially expressed transcripts were annotated using Blast2GO and relevant gene clusters were identified. In addition to a high degree of downregulation of a wide range of genes, we found upregulation of genes involved in protein folding/rescue, protein degradation, cell death, oxidative stress, metabolism, inflammation/immunity, transcription/translation, ion transport, cell cycle/growth, cell signaling, cellular trafficking, and structure/cytoskeleton. These results demonstrate the complex multi-modal cellular response to thermal stress in juvenile salmon.
Abstract Thermal exposure is a serious and growing challenge facing fish species worldwide. Chinook salmon (Oncorhynchus tshawytscha) living in the southern portion of their native range are particularly likely to encounter warmer water due to a confluence of factors. River alterations have increased the likelihood that juveniles will be exposed to warm water temperatures during their freshwater life stage, which can negatively impact survival, growth, and development and pose a threat to dwindling salmon populations. To better understand how acute thermal exposure affects the biology of salmon, we performed a transcriptional analysis of gill tissue from Chinook salmon juveniles reared at 12° and exposed acutely to water temperatures ranging from ideal to potentially lethal (12° to 25°). Reverse-transcribed RNA libraries were sequenced on the Illumina HiSeq2000 platform and a de novo reference transcriptome was created. Differentially expressed transcripts were annotated using Blast2GO and relevant gene clusters were identified. In addition to a high degree of downregulation of a wide range of genes, we found upregulation of genes involved in protein folding/rescue, protein degradation, cell death, oxidative stress, metabolism, inflammation/immunity, transcription/translation, ion transport, cell cycle/growth, cell signaling, cellular trafficking, and structure/cytoskeleton. These results demonstrate the complex multi-modal cellular response to thermal stress in juvenile salmon.
Author Rincón, Gonzalo
Baerwald, Melinda R
Tomalty, Katharine M H
Stephens, Molly R
Meek, Mariah H
May, Bernie P
Fangue, Nann A
Author_xml – sequence: 1
  givenname: Katharine M H
  surname: Tomalty
  fullname: Tomalty, Katharine M H
  email: kmtomalty@ucdavis.edu
  organization: Department of Animal Science, University of California, Davis, California 95616 kmtomalty@ucdavis.edu
– sequence: 2
  givenname: Mariah H
  surname: Meek
  fullname: Meek, Mariah H
  organization: Department of Animal Science, University of California, Davis, California 95616
– sequence: 3
  givenname: Molly R
  surname: Stephens
  fullname: Stephens, Molly R
  organization: Department of Animal Science, University of California, Davis, California 95616
– sequence: 4
  givenname: Gonzalo
  surname: Rincón
  fullname: Rincón, Gonzalo
  organization: Department of Animal Science, University of California, Davis, California 95616
– sequence: 5
  givenname: Nann A
  surname: Fangue
  fullname: Fangue, Nann A
  organization: Department of Wildlife, Fish, and Conservation Biology, University of California, Davis, California 95616
– sequence: 6
  givenname: Bernie P
  surname: May
  fullname: May, Bernie P
  organization: Department of Animal Science, University of California, Davis, California 95616
– sequence: 7
  givenname: Melinda R
  surname: Baerwald
  fullname: Baerwald, Melinda R
  organization: Department of Animal Science, University of California, Davis, California 95616
BackLink https://www.ncbi.nlm.nih.gov/pubmed/25911227$$D View this record in MEDLINE/PubMed
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Issue 7
Keywords thermal tolerance
Oncorhynchus tshawytscha
gene discovery
Illumina
Language English
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This is an open-access article distributed under the terms of the Creative Commons Attribution 4.0 International License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.
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Snippet Thermal exposure is a serious and growing challenge facing fish species worldwide. Chinook salmon (Oncorhynchus tshawytscha) living in the southern portion of...
Abstract Thermal exposure is a serious and growing challenge facing fish species worldwide. Chinook salmon (Oncorhynchus tshawytscha) living in the southern...
Thermal exposure is a serious and growing challenge facing fish species worldwide. Chinook salmon ( Oncorhynchus tshawytscha ) living in the southern portion...
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SubjectTerms Animals
Down-Regulation
Fish Proteins - genetics
Gills - metabolism
Investigations
Protein Denaturation
RNA - chemistry
RNA - genetics
RNA - metabolism
Salmon - genetics
Salmon - growth & development
Salmon - metabolism
Sequence Analysis, RNA
Temperature
Transcriptome
Up-Regulation
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Title Transcriptional Response to Acute Thermal Exposure in Juvenile Chinook Salmon Determined by RNAseq
URI https://www.ncbi.nlm.nih.gov/pubmed/25911227
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https://pubmed.ncbi.nlm.nih.gov/PMC4502368
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