Comparative sequence analysis of the 5′ noncoding region of the enteroviruses and rhinoviruses
A comparative sequence analysis of the 5′ noncoding region of a subgroup of the picornaviruses, including the polioviruses, coxsackie B3, and the human rhinoviruses, reveals the conservation of certain features despite the divergence of sequence. In this subgroup, for which nine complete sequences a...
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| Published in | Virology (New York, N.Y.) Vol. 165; no. 1; pp. 42 - 50 |
|---|---|
| Main Authors | , , |
| Format | Journal Article |
| Language | English |
| Published |
San Diego, CA
Elsevier Inc
01.07.1988
Elsevier |
| Subjects | |
| Online Access | Get full text |
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| Abstract | A comparative sequence analysis of the 5′ noncoding region of a subgroup of the picornaviruses, including the polioviruses, coxsackie B3, and the human rhinoviruses, reveals the conservation of certain features despite the divergence of sequence. In this subgroup, for which nine complete sequences are available, two long stretches of sequence, two pyrimidine-rich regions, and 22 hairpins are conserved. Based on these results, similar secondary structures encompassing the entire 5′ noncoding regions of these viruses are predicted. The fact that sequence divergence occurred only in a manner that allowed conservation of these structures implicates a biologically functional role for this region. The possible roles it may have in the picornavirus life cycle are discussed. |
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| AbstractList | A comparative sequence analysis of the 5′ noncoding region of a subgroup of the picornaviruses, including the polioviruses, coxsackie B3, and the human rhinoviruses, reveals the conservation of certain features despite the divergence of sequence. In this subgroup, for which nine complete sequences are available, two long stretches of sequence, two pyrimidine-rich regions, and 22 hairpins are conserved. Based on these results, similar secondary structures encompassing the entire 5′ noncoding regions of these viruses are predicted. The fact that sequence divergence occurred only in a manner that allowed conservation of these structures implicates a biologically functional role for this region. The possible roles it may have in the picornavirus life cycle are discussed. |
| Author | Maizel, Jacob V. Rivera, Victor M. Welsh, J.Douglas |
| Author_xml | – sequence: 1 givenname: Victor M. surname: Rivera fullname: Rivera, Victor M. organization: Program Resources, Inc., NCI-FCRF, Frederick, Maryland 21701, USA – sequence: 2 givenname: J.Douglas surname: Welsh fullname: Welsh, J.Douglas organization: Department of Molecular Biology, Princeton University, Princeton, New Jersey 08544, USA – sequence: 3 givenname: Jacob V. surname: Maizel fullname: Maizel, Jacob V. organization: Laboratory of Mathematical Biology, Building 469, Room 151, National Cancer Institute, Frederick, Maryland 21701, USA |
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| Keywords | Virus 5' terminal-Sequence RNA Molecular structure Picornaviridae Enterovirus Comparative study Rhinovirus |
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| SubjectTerms | Base Sequence Biological and medical sciences Enterovirus - genetics Fundamental and applied biological sciences. Psychology Genes, Viral Microbiology Molecular Sequence Data Morphology, structure, chemical composition, physicochemical properties Nucleic Acid Conformation Rhinovirus - genetics RNA, Viral - genetics Sequence Homology, Nucleic Acid Virology |
| Title | Comparative sequence analysis of the 5′ noncoding region of the enteroviruses and rhinoviruses |
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