Short-term lime application impacts microbial community composition and potential function in an acid black soil
Background and aims Soil acidification is a natural process that can be accelerated by intensive nitrogen fertilization. Lime application is a typical agricultural practice to enhance soil pH and increase nutrient availability for crop production. Our study aims to reveal how liming altered soil mic...
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Published in | Plant and soil Vol. 470; no. 1-2; pp. 35 - 50 |
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Main Authors | , , , , , , , |
Format | Journal Article |
Language | English |
Published |
Cham
Springer International Publishing
2022
Springer Springer Nature B.V |
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Abstract | Background and aims
Soil acidification is a natural process that can be accelerated by intensive nitrogen fertilization. Lime application is a typical agricultural practice to enhance soil pH and increase nutrient availability for crop production. Our study aims to reveal how liming altered soil microbial community composition and potential function in the bulk and rhizosphere soils of soybean growing in an acid black soil.
Methods
A short-term soybean pot experiment was conducted in an acid black soil with the amendment of five different dosages of lime. Soybean plants were harvested and soil samples were collected at the initial flowering stage. Plant biomass, shoot height and root length, as well as soil chemical properties and total microbial activities of bulk soils were measured. The abundance and composition of microbial communities in bulk and rhizosphere soils were determined using qPCR and Illumina MiSeq sequencing, respectively.
Results
Liming significantly increased soybean growth and soil microbial activities, and altered soil properties such as soil pH, available phosphorus (AP), ammonium nitrogen (NH
4
+
-N), nitrate nitrogen (NO
3
−
-N). Lime addition increased soil bacterial abundance and decreased fungal abundance in the bulk soils, but had no effect on microbial abundance in the rhizosphere soils as well as alpha-diversity of soil microbial community. Microbial community structures in bulk and rhizosphere soils were significantly varied with lime amendment that were related to soil chemical properties, of which soil pH was detected as the most important soil factors. In addition, liming significantly increased the potential functions of amino acid, cofactors and vitamins mechanisms of bacterial communities and the guild abundance of AM fungi.
Conclusions
Lime application altered soil properties, increased soil microbial activities, and changed soil microbial compositions and potential functions, which eventually resulted in the improvement of soybean plant growth. |
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AbstractList | Background and aims Soil acidification is a natural process that can be accelerated by intensive nitrogen fertilization. Lime application is a typical agricultural practice to enhance soil pH and increase nutrient availability for crop production. Our study aims to reveal how liming altered soil microbial community composition and potential function in the bulk and rhizosphere soils of soybean growing in an acid black soil. Methods A short-term soybean pot experiment was conducted in an acid black soil with the amendment of five different dosages of lime. Soybean plants were harvested and soil samples were collected at the initial flowering stage. Plant biomass, shoot height and root length, as well as soil chemical properties and total microbial activities of bulk soils were measured. The abundance and composition of microbial communities in bulk and rhizosphere soils were determined using qPCR and Illumina MiSeq sequencing, respectively. Results Liming significantly increased soybean growth and soil microbial activities, and altered soil properties such as soil pH, available phosphorus (AP), ammonium nitrogen (NH.sub.4.sup.+-N), nitrate nitrogen (NO.sub.3.sup.--N). Lime addition increased soil bacterial abundance and decreased fungal abundance in the bulk soils, but had no effect on microbial abundance in the rhizosphere soils as well as alpha-diversity of soil microbial community. Microbial community structures in bulk and rhizosphere soils were significantly varied with lime amendment that were related to soil chemical properties, of which soil pH was detected as the most important soil factors. In addition, liming significantly increased the potential functions of amino acid, cofactors and vitamins mechanisms of bacterial communities and the guild abundance of AM fungi. Conclusions Lime application altered soil properties, increased soil microbial activities, and changed soil microbial compositions and potential functions, which eventually resulted in the improvement of soybean plant growth. Background and aims Soil acidification is a natural process that can be accelerated by intensive nitrogen fertilization. Lime application is a typical agricultural practice to enhance soil pH and increase nutrient availability for crop production. Our study aims to reveal how liming altered soil microbial community composition and potential function in the bulk and rhizosphere soils of soybean growing in an acid black soil. Methods A short-term soybean pot experiment was conducted in an acid black soil with the amendment of five different dosages of lime. Soybean plants were harvested and soil samples were collected at the initial flowering stage. Plant biomass, shoot height and root length, as well as soil chemical properties and total microbial activities of bulk soils were measured. The abundance and composition of microbial communities in bulk and rhizosphere soils were determined using qPCR and Illumina MiSeq sequencing, respectively. Results Liming significantly increased soybean growth and soil microbial activities, and altered soil properties such as soil pH, available phosphorus (AP), ammonium nitrogen (NH 4 + -N), nitrate nitrogen (NO 3 − -N). Lime addition increased soil bacterial abundance and decreased fungal abundance in the bulk soils, but had no effect on microbial abundance in the rhizosphere soils as well as alpha-diversity of soil microbial community. Microbial community structures in bulk and rhizosphere soils were significantly varied with lime amendment that were related to soil chemical properties, of which soil pH was detected as the most important soil factors. In addition, liming significantly increased the potential functions of amino acid, cofactors and vitamins mechanisms of bacterial communities and the guild abundance of AM fungi. Conclusions Lime application altered soil properties, increased soil microbial activities, and changed soil microbial compositions and potential functions, which eventually resulted in the improvement of soybean plant growth. Soil acidification is a natural process that can be accelerated by intensive nitrogen fertilization. Lime application is a typical agricultural practice to enhance soil pH and increase nutrient availability for crop production. Our study aims to reveal how liming altered soil microbial community composition and potential function in the bulk and rhizosphere soils of soybean growing in an acid black soil. A short-term soybean pot experiment was conducted in an acid black soil with the amendment of five different dosages of lime. Soybean plants were harvested and soil samples were collected at the initial flowering stage. Plant biomass, shoot height and root length, as well as soil chemical properties and total microbial activities of bulk soils were measured. The abundance and composition of microbial communities in bulk and rhizosphere soils were determined using qPCR and Illumina MiSeq sequencing, respectively. Liming significantly increased soybean growth and soil microbial activities, and altered soil properties such as soil pH, available phosphorus (AP), ammonium nitrogen (NH.sub.4.sup.+-N), nitrate nitrogen (NO.sub.3.sup.--N). Lime addition increased soil bacterial abundance and decreased fungal abundance in the bulk soils, but had no effect on microbial abundance in the rhizosphere soils as well as alpha-diversity of soil microbial community. Microbial community structures in bulk and rhizosphere soils were significantly varied with lime amendment that were related to soil chemical properties, of which soil pH was detected as the most important soil factors. In addition, liming significantly increased the potential functions of amino acid, cofactors and vitamins mechanisms of bacterial communities and the guild abundance of AM fungi. Lime application altered soil properties, increased soil microbial activities, and changed soil microbial compositions and potential functions, which eventually resulted in the improvement of soybean plant growth. Background and aimsSoil acidification is a natural process that can be accelerated by intensive nitrogen fertilization. Lime application is a typical agricultural practice to enhance soil pH and increase nutrient availability for crop production. Our study aims to reveal how liming altered soil microbial community composition and potential function in the bulk and rhizosphere soils of soybean growing in an acid black soil.MethodsA short-term soybean pot experiment was conducted in an acid black soil with the amendment of five different dosages of lime. Soybean plants were harvested and soil samples were collected at the initial flowering stage. Plant biomass, shoot height and root length, as well as soil chemical properties and total microbial activities of bulk soils were measured. The abundance and composition of microbial communities in bulk and rhizosphere soils were determined using qPCR and Illumina MiSeq sequencing, respectively.ResultsLiming significantly increased soybean growth and soil microbial activities, and altered soil properties such as soil pH, available phosphorus (AP), ammonium nitrogen (NH4+-N), nitrate nitrogen (NO3−-N). Lime addition increased soil bacterial abundance and decreased fungal abundance in the bulk soils, but had no effect on microbial abundance in the rhizosphere soils as well as alpha-diversity of soil microbial community. Microbial community structures in bulk and rhizosphere soils were significantly varied with lime amendment that were related to soil chemical properties, of which soil pH was detected as the most important soil factors. In addition, liming significantly increased the potential functions of amino acid, cofactors and vitamins mechanisms of bacterial communities and the guild abundance of AM fungi.ConclusionsLime application altered soil properties, increased soil microbial activities, and changed soil microbial compositions and potential functions, which eventually resulted in the improvement of soybean plant growth. |
Audience | Academic |
Author | Liu, Xiaobing Yao, Qin Li, Yansheng Jin, Jian Wang, Guanghua Li, Sen Yu, Zhenhua Liu, Junjie |
Author_xml | – sequence: 1 givenname: Sen surname: Li fullname: Li, Sen organization: Key Laboratory of Mollisols Agroecology, Northeast Institute of Geography and Agroecology, Chinese Academy of Sciences, University of Chinese Academy of Science – sequence: 2 givenname: Junjie surname: Liu fullname: Liu, Junjie organization: Key Laboratory of Mollisols Agroecology, Northeast Institute of Geography and Agroecology, Chinese Academy of Sciences – sequence: 3 givenname: Qin surname: Yao fullname: Yao, Qin organization: Key Laboratory of Mollisols Agroecology, Northeast Institute of Geography and Agroecology, Chinese Academy of Sciences – sequence: 4 givenname: Zhenhua surname: Yu fullname: Yu, Zhenhua organization: Key Laboratory of Mollisols Agroecology, Northeast Institute of Geography and Agroecology, Chinese Academy of Sciences – sequence: 5 givenname: Yansheng surname: Li fullname: Li, Yansheng organization: Key Laboratory of Mollisols Agroecology, Northeast Institute of Geography and Agroecology, Chinese Academy of Sciences – sequence: 6 givenname: Jian surname: Jin fullname: Jin, Jian organization: Key Laboratory of Mollisols Agroecology, Northeast Institute of Geography and Agroecology, Chinese Academy of Sciences – sequence: 7 givenname: Xiaobing surname: Liu fullname: Liu, Xiaobing organization: Key Laboratory of Mollisols Agroecology, Northeast Institute of Geography and Agroecology, Chinese Academy of Sciences – sequence: 8 givenname: Guanghua surname: Wang fullname: Wang, Guanghua email: wanggh@iga.ac.cn organization: Key Laboratory of Mollisols Agroecology, Northeast Institute of Geography and Agroecology, Chinese Academy of Sciences |
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CitedBy_id | crossref_primary_10_1007_s11104_024_06811_7 crossref_primary_10_1016_j_pedsph_2024_06_011 crossref_primary_10_3390_agronomy14030456 crossref_primary_10_1007_s11056_023_10010_0 crossref_primary_10_1007_s42729_024_01893_9 crossref_primary_10_3389_fpls_2022_1067618 crossref_primary_10_3390_agronomy13071783 crossref_primary_10_1007_s11104_024_06476_2 crossref_primary_10_1007_s11104_023_05957_0 crossref_primary_10_1016_j_apsoil_2023_104893 crossref_primary_10_1002_jpln_202300146 crossref_primary_10_1007_s11104_021_05280_6 |
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Keywords | Fungal community MiSeq sequencing Soybean Pot experiment Bacterial community |
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Soil acidification is a natural process that can be accelerated by intensive nitrogen fertilization. Lime application is a typical... Background and aims Soil acidification is a natural process that can be accelerated by intensive nitrogen fertilization. Lime application is a typical... Soil acidification is a natural process that can be accelerated by intensive nitrogen fertilization. Lime application is a typical agricultural practice to... Background and aimsSoil acidification is a natural process that can be accelerated by intensive nitrogen fertilization. Lime application is a typical... |
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SubjectTerms | Abundance Acidic soils Acidification Agricultural practices Agriculture Amino acids Ammonium Analysis Biomedical and Life Sciences Chemical properties Cofactors Community composition Composition Crop production Ecology Fertilization Flowering Growth Life Sciences Lime Liming Microbiomes Microorganisms Nitrates Nitrogen Nutrient availability pH effects Phosphorus Physiological aspects Plant Physiology Plant Sciences Plants (botany) Regular Article Rhizosphere Soil acidification Soil acidity Soil chemistry Soil lime Soil microbiology Soil microorganisms Soil pH Soil properties Soil Science & Conservation Soybean Soybeans Vitamins |
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Title | Short-term lime application impacts microbial community composition and potential function in an acid black soil |
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