Modulation of the fungal mycobiome is regulated by the chitin-binding receptor FIBCD1

Host-microbiota interactions are critical in regulating mammalian health and disease. In addition to bacteria, parasites, and viruses, beneficial communities of fungi (the mycobiome) are important modulators of immune- and tissue-homeostasis. Chitin is a major component of the fungal cell wall, and...

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Published inThe Journal of experimental medicine Vol. 216; no. 12; pp. 2689 - 2700
Main Authors Moeller, Jesper B, Leonardi, Irina, Schlosser, Anders, Flamar, Anne-Laure, Bessman, Nicholas J, Putzel, Gregory Garbès, Thomsen, Theresa, Hammond, Mark, Jepsen, Christine S, Skjødt, Karsten, Füchtbauer, Ernst-Martin, Farber, Donna L, Sorensen, Grith L, Iliev, Iliyan D, Holmskov, Uffe, Artis, David
Format Journal Article
LanguageEnglish
Published United States Rockefeller University Press 02.12.2019
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Abstract Host-microbiota interactions are critical in regulating mammalian health and disease. In addition to bacteria, parasites, and viruses, beneficial communities of fungi (the mycobiome) are important modulators of immune- and tissue-homeostasis. Chitin is a major component of the fungal cell wall, and fibrinogen C containing domain 1 (FIBCD1) is a chitin-binding protein; however, the role of this molecule in influencing host-mycobiome interactions in vivo has never been examined. Here, we identify direct binding of FIBCD1 to intestinal-derived fungi and demonstrate that epithelial-specific expression of FIBCD1 results in significantly reduced fungal colonization and amelioration of fungal-driven intestinal inflammation. Collectively, these results identify FIBCD1 as a previously unrecognized microbial pattern recognition receptor through which intestinal epithelial cells can recognize and control fungal colonization, limit fungal dysbiosis, and dampen intestinal inflammation.
AbstractList Host–microbiota interactions are critical in regulating mammalian health and disease. In addition to bacteria, parasites, and viruses, beneficial communities of fungi (the mycobiome) are important modulators of immune- and tissue-homeostasis. Chitin is a major component of the fungal cell wall, and fibrinogen C containing domain 1 (FIBCD1) is a chitin-binding protein; however, the role of this molecule in influencing host–mycobiome interactions in vivo has never been examined. Here, we identify direct binding of FIBCD1 to intestinal-derived fungi and demonstrate that epithelial-specific expression of FIBCD1 results in significantly reduced fungal colonization and amelioration of fungal-driven intestinal inflammation. Collectively, these results identify FIBCD1 as a previously unrecognized microbial pattern recognition receptor through which intestinal epithelial cells can recognize and control fungal colonization, limit fungal dysbiosis, and dampen intestinal inflammation.
In the present study, Moeller et al. identify a previously unrecognized pathway through which intestinal epithelial cells expressing the novel chitin-binding receptor FIBCD1 can recognize and control intestinal fungal colonization, limit fungal dysbiosis, and dampen intestinal inflammation. Host–microbiota interactions are critical in regulating mammalian health and disease. In addition to bacteria, parasites, and viruses, beneficial communities of fungi (the mycobiome) are important modulators of immune- and tissue-homeostasis. Chitin is a major component of the fungal cell wall, and fibrinogen C containing domain 1 (FIBCD1) is a chitin-binding protein; however, the role of this molecule in influencing host–mycobiome interactions in vivo has never been examined. Here, we identify direct binding of FIBCD1 to intestinal-derived fungi and demonstrate that epithelial-specific expression of FIBCD1 results in significantly reduced fungal colonization and amelioration of fungal-driven intestinal inflammation. Collectively, these results identify FIBCD1 as a previously unrecognized microbial pattern recognition receptor through which intestinal epithelial cells can recognize and control fungal colonization, limit fungal dysbiosis, and dampen intestinal inflammation.
Author Jepsen, Christine S
Iliev, Iliyan D
Hammond, Mark
Flamar, Anne-Laure
Bessman, Nicholas J
Thomsen, Theresa
Füchtbauer, Ernst-Martin
Putzel, Gregory Garbès
Leonardi, Irina
Schlosser, Anders
Moeller, Jesper B
Skjødt, Karsten
Holmskov, Uffe
Artis, David
Sorensen, Grith L
Farber, Donna L
AuthorAffiliation 1 Jill Roberts Institute for Research in Inflammatory Bowel Disease, Friedman Center for Nutrition and Inflammation, Joan and Sanford I. Weill Department of Medicine, Department of Microbiology and Immunology, Weill Cornell Medicine, Cornell University, New York, NY
3 Department of Molecular Biology and Genetics, Aarhus University, Aarhus, Denmark
4 Columbia Center for Translational Immunology, Department of Surgery and Department of Microbiology and Immunology, Columbia University, New York, NY
2 Department of Molecular Medicine, University of Southern Denmark, Odense, Denmark
AuthorAffiliation_xml – name: 1 Jill Roberts Institute for Research in Inflammatory Bowel Disease, Friedman Center for Nutrition and Inflammation, Joan and Sanford I. Weill Department of Medicine, Department of Microbiology and Immunology, Weill Cornell Medicine, Cornell University, New York, NY
– name: 3 Department of Molecular Biology and Genetics, Aarhus University, Aarhus, Denmark
– name: 2 Department of Molecular Medicine, University of Southern Denmark, Odense, Denmark
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  surname: Iliev
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  organization: Jill Roberts Institute for Research in Inflammatory Bowel Disease, Friedman Center for Nutrition and Inflammation, Joan and Sanford I. Weill Department of Medicine, Department of Microbiology and Immunology, Weill Cornell Medicine, Cornell University, New York, NY dartis@med.cornell.edu
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Cites_doi 10.1038/s41598-017-12540-y
10.1126/science.8469985
10.4049/jimmunol.0901526
10.1016/j.jim.2015.04.004
10.1016/j.it.2018.02.008
10.1016/S0065-308X(04)57004-5
10.1128/IAI.01432-07
10.1016/j.mimet.2017.10.015
10.1101/gr.096651.109
10.1086/528990
10.1038/nri.2017.55
10.1128/JCM.01344-06
10.1371/journal.ppat.1005662
10.1093/bioinformatics/btq461
10.1016/S0022-2836(05)80360-2
10.1136/gutjnl-2018-317178
10.1126/science.aao1503
10.1369/0022155417743694
10.1007/s00281-012-0348-2
10.1007/s12016-017-8600-0
10.1515/ap-2015-0047
10.1136/gutjnl-2015-310746
10.1038/ni.1920
10.1186/1471-2180-12-255
10.1016/j.immuni.2018.08.024
10.1111/j.1472-765X.2008.02408.x
10.1016/j.chom.2016.05.003
10.1016/j.immuni.2017.04.008
10.1016/j.chom.2018.11.003
10.1126/science.1221789
10.1016/j.chom.2015.09.008
10.1007/BF00928339
10.1016/j.immuni.2018.08.018
10.1126/scitranslmed.3004404
10.1128/EC.00307-07
10.1038/nmeth.2604
10.1093/nar/gkr1013
10.1371/journal.pntd.0001856
10.1074/jbc.274.10.6476
10.1016/j.immuni.2014.02.003
10.1084/jem.20061929
10.1080/20013078.2018.1428004
10.1073/pnas.0307317101
10.1038/nature05746
10.1172/JCI44631
10.3389/fimmu.2018.01967
10.1074/jbc.M113.520577
10.1098/rspb.1994.0123
10.1038/mi.2015.21
10.1111/j.1365-2958.2007.05872.x
10.4049/jimmunol.177.1.511
10.1038/nature23676
10.1093/ecco-jcc/jjv209
10.1017/S0031182000057188
10.1038/nrmicro.2016.59
10.1097/MCG.0000000000000035
10.1074/jbc.M109.061523
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U. Holmskov and D. Artis contributed equally to this paper.
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References Altschul (2023072609354097100_bib1) 1990; 215
Barman (2023072609354097100_bib3) 2008; 76
Wainright (2023072609354097100_bib50) 1993; 260
Pinto (2023072609354097100_bib36) 1999; 274
Li (2023072609354097100_bib27) 2014; 48
Satoh (2023072609354097100_bib40) 2010; 11
Wojno (2023072609354097100_bib55) 2015; 8
Suzuki (2023072609354097100_bib45) 2004; 101
Jawhara (2023072609354097100_bib18) 2008; 197
Li (2023072609354097100_bib28) 2018; 24
Rodrigues (2023072609354097100_bib39) 2008; 7
Belkaid (2023072609354097100_bib4) 2017; 46
Nguyen (2023072609354097100_bib33) 2011; 121
Liedke (2023072609354097100_bib29) 2017; 7
Wang (2023072609354097100_bib52) 2018; 49
Krych (2023072609354097100_bib23) 2018; 144
Brown (2023072609354097100_bib6) 2012; 4
Sokol (2023072609354097100_bib44) 2017; 66
Cliffe (2023072609354097100_bib7) 2004; 57
Edgar (2023072609354097100_bib11) 2013; 10
Iliev (2023072609354097100_bib16) 2017; 17
Klose (2023072609354097100_bib22) 2017; 549
Latgé (2023072609354097100_bib24) 2007; 66
Lewis (2023072609354097100_bib26) 2015; 18
Eichenberger (2023072609354097100_bib12) 2018; 7
Hasnain (2023072609354097100_bib15) 2012; 6
Reese (2023072609354097100_bib38) 2007; 447
Leonardi (2023072609354097100_bib25) 2018; 359
Elieh Ali Komi (2023072609354097100_bib13) 2018; 54
Iliev (2023072609354097100_bib17) 2012; 336
Klementowicz (2023072609354097100_bib21) 2012; 34
Preston (2023072609354097100_bib37) 1985; 71
Liguori (2023072609354097100_bib30) 2016; 10
Guo (2023072609354097100_bib14) 2008; 47
Brodaczewska (2023072609354097100_bib5) 2015; 60
Edgar (2023072609354097100_bib10) 2010; 26
Wang (2023072609354097100_bib53) 2012; 40
Drake (2023072609354097100_bib9) 1994; 257
Schabereiter-Gurtner (2023072609354097100_bib41) 2007; 45
Zaph (2023072609354097100_bib57) 2006; 177
An (2023072609354097100_bib2) 2007; 204
Wypych (2023072609354097100_bib56) 2018; 39
Wang (2023072609354097100_bib51) 2016; 12
Jenkins (2023072609354097100_bib19) 1983; 86
Tang (2023072609354097100_bib46) 2015; 421
Malik (2023072609354097100_bib32) 2018; 49
Jepsen (2023072609354097100_bib20) 2018; 9
Thomsen (2023072609354097100_bib47) 2010; 285
Wheeler (2023072609354097100_bib54) 2016; 19
Van Dyken (2023072609354097100_bib48) 2014; 40
Schlosser (2023072609354097100_bib42) 2009; 183
Liu (2023072609354097100_bib31) 2012; 12
Peterson (2023072609354097100_bib35) 2009; 19
von Huth (2023072609354097100_bib49) 2018; 66
Coker (2023072609354097100_bib8) 2019; 68
Peay (2023072609354097100_bib34) 2016; 14
Shrive (2023072609354097100_bib43) 2014; 289
References_xml – volume: 7
  start-page: 12187
  year: 2017
  ident: 2023072609354097100_bib29
  article-title: Characterization of the antifungal functions of a WGA-Fc (IgG2a) fusion protein binding to cell wall chitin oligomers
  publication-title: Sci. Rep.
  doi: 10.1038/s41598-017-12540-y
  contributor:
    fullname: Liedke
– volume: 260
  start-page: 340
  year: 1993
  ident: 2023072609354097100_bib50
  article-title: Monophyletic origins of the metazoa: an evolutionary link with fungi
  publication-title: Science.
  doi: 10.1126/science.8469985
  contributor:
    fullname: Wainright
– volume: 183
  start-page: 3800
  year: 2009
  ident: 2023072609354097100_bib42
  article-title: Characterization of FIBCD1 as an acetyl group-binding receptor that binds chitin
  publication-title: J. Immunol.
  doi: 10.4049/jimmunol.0901526
  contributor:
    fullname: Schlosser
– volume: 421
  start-page: 112
  year: 2015
  ident: 2023072609354097100_bib46
  article-title: Mycobiome: Approaches to analysis of intestinal fungi
  publication-title: J. Immunol. Methods.
  doi: 10.1016/j.jim.2015.04.004
  contributor:
    fullname: Tang
– volume: 39
  start-page: 697
  year: 2018
  ident: 2023072609354097100_bib56
  article-title: Antibiotics as Instigators of Microbial Dysbiosis: Implications for Asthma and Allergy
  publication-title: Trends Immunol.
  doi: 10.1016/j.it.2018.02.008
  contributor:
    fullname: Wypych
– volume: 57
  start-page: 255
  year: 2004
  ident: 2023072609354097100_bib7
  article-title: The Trichuris muris system: a paradigm of resistance and susceptibility to intestinal nematode infection
  publication-title: Adv. Parasitol.
  doi: 10.1016/S0065-308X(04)57004-5
  contributor:
    fullname: Cliffe
– volume: 76
  start-page: 907
  year: 2008
  ident: 2023072609354097100_bib3
  article-title: Enteric salmonellosis disrupts the microbial ecology of the murine gastrointestinal tract
  publication-title: Infect. Immun.
  doi: 10.1128/IAI.01432-07
  contributor:
    fullname: Barman
– volume: 144
  start-page: 1
  year: 2018
  ident: 2023072609354097100_bib23
  article-title: Have you tried spermine? A rapid and cost-effective method to eliminate dextran sodium sulfate inhibition of PCR and RT-PCR
  publication-title: J. Microbiol. Methods.
  doi: 10.1016/j.mimet.2017.10.015
  contributor:
    fullname: Krych
– volume: 19
  start-page: 2317
  year: 2009
  ident: 2023072609354097100_bib35
  article-title: The NIH Human Microbiome Project
  publication-title: Genome Res.
  doi: 10.1101/gr.096651.109
  contributor:
    fullname: Peterson
– volume: 197
  start-page: 972
  year: 2008
  ident: 2023072609354097100_bib18
  article-title: Colonization of mice by Candida albicans is promoted by chemically induced colitis and augments inflammatory responses through galectin-3
  publication-title: J. Infect. Dis.
  doi: 10.1086/528990
  contributor:
    fullname: Jawhara
– volume: 17
  start-page: 635
  year: 2017
  ident: 2023072609354097100_bib16
  article-title: Fungal dysbiosis: immunity and interactions at mucosal barriers
  publication-title: Nat. Rev. Immunol.
  doi: 10.1038/nri.2017.55
  contributor:
    fullname: Iliev
– volume: 45
  start-page: 906
  year: 2007
  ident: 2023072609354097100_bib41
  article-title: Development of novel real-time PCR assays for detection and differentiation of eleven medically important Aspergillus and Candida species in clinical specimens
  publication-title: J. Clin. Microbiol.
  doi: 10.1128/JCM.01344-06
  contributor:
    fullname: Schabereiter-Gurtner
– volume: 12
  year: 2016
  ident: 2023072609354097100_bib51
  article-title: Dectin-3 Deficiency Promotes Colitis Development due to Impaired Antifungal Innate Immune Responses in the Gut
  publication-title: PLoS Pathog.
  doi: 10.1371/journal.ppat.1005662
  contributor:
    fullname: Wang
– volume: 26
  start-page: 2460
  year: 2010
  ident: 2023072609354097100_bib10
  article-title: Search and clustering orders of magnitude faster than BLAST
  publication-title: Bioinformatics.
  doi: 10.1093/bioinformatics/btq461
  contributor:
    fullname: Edgar
– volume: 215
  start-page: 403
  year: 1990
  ident: 2023072609354097100_bib1
  article-title: Basic local alignment search tool
  publication-title: J. Mol. Biol.
  doi: 10.1016/S0022-2836(05)80360-2
  contributor:
    fullname: Altschul
– volume: 68
  start-page: 654
  year: 2019
  ident: 2023072609354097100_bib8
  article-title: Enteric fungal microbiota dysbiosis and ecological alterations in colorectal cancer
  publication-title: Gut.
  doi: 10.1136/gutjnl-2018-317178
  contributor:
    fullname: Coker
– volume: 359
  start-page: 232
  year: 2018
  ident: 2023072609354097100_bib25
  article-title: CX3CR1+ mononuclear phagocytes control immunity to intestinal fungi
  publication-title: Science.
  doi: 10.1126/science.aao1503
  contributor:
    fullname: Leonardi
– volume: 66
  start-page: 85
  year: 2018
  ident: 2023072609354097100_bib49
  article-title: Immunohistochemical Localization of Fibrinogen C Domain Containing 1 on Epithelial and Mucosal Surfaces in Human Tissues
  publication-title: J. Histochem. Cytochem.
  doi: 10.1369/0022155417743694
  contributor:
    fullname: von Huth
– volume: 34
  start-page: 815
  year: 2012
  ident: 2023072609354097100_bib21
  article-title: Trichuris muris: a model of gastrointestinal parasite infection
  publication-title: Semin. Immunopathol.
  doi: 10.1007/s00281-012-0348-2
  contributor:
    fullname: Klementowicz
– volume: 54
  start-page: 213
  year: 2018
  ident: 2023072609354097100_bib13
  article-title: Chitin and Its Effects on Inflammatory and Immune Responses
  publication-title: Clin. Rev. Allergy Immunol.
  doi: 10.1007/s12016-017-8600-0
  contributor:
    fullname: Elieh Ali Komi
– volume: 60
  start-page: 337
  year: 2015
  ident: 2023072609354097100_bib5
  article-title: Chitin, a key factor in immune regulation: lesson from infection with fungi and chitin bearing parasites
  publication-title: Acta Parasitol.
  doi: 10.1515/ap-2015-0047
  contributor:
    fullname: Brodaczewska
– volume: 66
  start-page: 1039
  year: 2017
  ident: 2023072609354097100_bib44
  article-title: Fungal microbiota dysbiosis in IBD
  publication-title: Gut.
  doi: 10.1136/gutjnl-2015-310746
  contributor:
    fullname: Sokol
– volume: 11
  start-page: 936
  year: 2010
  ident: 2023072609354097100_bib40
  article-title: The Jmjd3-Irf4 axis regulates M2 macrophage polarization and host responses against helminth infection
  publication-title: Nat. Immunol.
  doi: 10.1038/ni.1920
  contributor:
    fullname: Satoh
– volume: 12
  start-page: 255
  year: 2012
  ident: 2023072609354097100_bib31
  article-title: FungiQuant: a broad-coverage fungal quantitative real-time PCR assay
  publication-title: BMC Microbiol.
  doi: 10.1186/1471-2180-12-255
  contributor:
    fullname: Liu
– volume: 49
  start-page: 515
  year: 2018
  ident: 2023072609354097100_bib32
  article-title: SYK-CARD9 Signaling Axis Promotes Gut Fungi-Mediated Inflammasome Activation to Restrict Colitis and Colon Cancer
  publication-title: Immunity.
  doi: 10.1016/j.immuni.2018.08.024
  contributor:
    fullname: Malik
– volume: 47
  start-page: 367
  year: 2008
  ident: 2023072609354097100_bib14
  article-title: Development of a real-time PCR method for Firmicutes and Bacteroidetes in faeces and its application to quantify intestinal population of obese and lean pigs
  publication-title: Lett. Appl. Microbiol.
  doi: 10.1111/j.1472-765X.2008.02408.x
  contributor:
    fullname: Guo
– volume: 19
  start-page: 865
  year: 2016
  ident: 2023072609354097100_bib54
  article-title: Immunological Consequences of Intestinal Fungal Dysbiosis
  publication-title: Cell Host Microbe.
  doi: 10.1016/j.chom.2016.05.003
  contributor:
    fullname: Wheeler
– volume: 46
  start-page: 562
  year: 2017
  ident: 2023072609354097100_bib4
  article-title: Homeostatic Immunity and the Microbiota
  publication-title: Immunity.
  doi: 10.1016/j.immuni.2017.04.008
  contributor:
    fullname: Belkaid
– volume: 24
  start-page: 847
  year: 2018
  ident: 2023072609354097100_bib28
  article-title: Response to Fungal Dysbiosis by Gut-Resident CX3CR1+ Mononuclear Phagocytes Aggravates Allergic Airway Disease
  publication-title: Cell Host Microbe.
  doi: 10.1016/j.chom.2018.11.003
  contributor:
    fullname: Li
– volume: 336
  start-page: 1314
  year: 2012
  ident: 2023072609354097100_bib17
  article-title: Interactions between commensal fungi and the C-type lectin receptor Dectin-1 influence colitis
  publication-title: Science.
  doi: 10.1126/science.1221789
  contributor:
    fullname: Iliev
– volume: 18
  start-page: 489
  year: 2015
  ident: 2023072609354097100_bib26
  article-title: Inflammation, Antibiotics, and Diet as Environmental Stressors of the Gut Microbiome in Pediatric Crohn’s Disease
  publication-title: Cell Host Microbe.
  doi: 10.1016/j.chom.2015.09.008
  contributor:
    fullname: Lewis
– volume: 71
  start-page: 373
  year: 1985
  ident: 2023072609354097100_bib37
  article-title: Trichuris muris: structure and formation of the egg polar plugs
  publication-title: Z. Parasitenkd.
  doi: 10.1007/BF00928339
  contributor:
    fullname: Preston
– volume: 49
  start-page: 504
  year: 2018
  ident: 2023072609354097100_bib52
  article-title: The Adaptor Protein CARD9 Protects against Colon Cancer by Restricting Mycobiota-Mediated Expansion of Myeloid-Derived Suppressor Cells
  publication-title: Immunity.
  doi: 10.1016/j.immuni.2018.08.018
  contributor:
    fullname: Wang
– volume: 4
  year: 2012
  ident: 2023072609354097100_bib6
  article-title: Hidden killers: human fungal infections
  publication-title: Sci. Transl. Med.
  doi: 10.1126/scitranslmed.3004404
  contributor:
    fullname: Brown
– volume: 7
  start-page: 602
  year: 2008
  ident: 2023072609354097100_bib39
  article-title: Binding of the wheat germ lectin to Cryptococcus neoformans suggests an association of chitinlike structures with yeast budding and capsular glucuronoxylomannan
  publication-title: Eukaryot. Cell.
  doi: 10.1128/EC.00307-07
  contributor:
    fullname: Rodrigues
– volume: 10
  start-page: 996
  year: 2013
  ident: 2023072609354097100_bib11
  article-title: UPARSE: highly accurate OTU sequences from microbial amplicon reads
  publication-title: Nat. Methods.
  doi: 10.1038/nmeth.2604
  contributor:
    fullname: Edgar
– volume: 40
  start-page: D1144
  issue: Database issue
  year: 2012
  ident: 2023072609354097100_bib53
  article-title: PrimerBank: a PCR primer database for quantitative gene expression analysis, 2012 update
  publication-title: Nucleic Acids Res.
  doi: 10.1093/nar/gkr1013
  contributor:
    fullname: Wang
– volume: 6
  year: 2012
  ident: 2023072609354097100_bib15
  article-title: Serine protease(s) secreted by the nematode Trichuris muris degrade the mucus barrier
  publication-title: PLoS Negl. Trop. Dis.
  doi: 10.1371/journal.pntd.0001856
  contributor:
    fullname: Hasnain
– volume: 274
  start-page: 6476
  year: 1999
  ident: 2023072609354097100_bib36
  article-title: Regulatory sequences of the mouse villin gene that efficiently drive transgenic expression in immature and differentiated epithelial cells of small and large intestines
  publication-title: J. Biol. Chem.
  doi: 10.1074/jbc.274.10.6476
  contributor:
    fullname: Pinto
– volume: 40
  start-page: 414
  year: 2014
  ident: 2023072609354097100_bib48
  article-title: Chitin activates parallel immune modules that direct distinct inflammatory responses via innate lymphoid type 2 and γδ T cells
  publication-title: Immunity.
  doi: 10.1016/j.immuni.2014.02.003
  contributor:
    fullname: Van Dyken
– volume: 204
  start-page: 1417
  year: 2007
  ident: 2023072609354097100_bib2
  article-title: Increased susceptibility to colitis and colorectal tumors in mice lacking core 3-derived O-glycans
  publication-title: J. Exp. Med.
  doi: 10.1084/jem.20061929
  contributor:
    fullname: An
– volume: 7
  year: 2018
  ident: 2023072609354097100_bib12
  article-title: Characterization of Trichuris muris secreted proteins and extracellular vesicles provides new insights into host-parasite communication
  publication-title: J. Extracell. Vesicles.
  doi: 10.1080/20013078.2018.1428004
  contributor:
    fullname: Eichenberger
– volume: 101
  start-page: 1981
  year: 2004
  ident: 2023072609354097100_bib45
  article-title: Aberrant expansion of segmented filamentous bacteria in IgA-deficient gut
  publication-title: Proc. Natl. Acad. Sci. USA.
  doi: 10.1073/pnas.0307317101
  contributor:
    fullname: Suzuki
– volume: 447
  start-page: 92
  year: 2007
  ident: 2023072609354097100_bib38
  article-title: Chitin induces accumulation in tissue of innate immune cells associated with allergy
  publication-title: Nature.
  doi: 10.1038/nature05746
  contributor:
    fullname: Reese
– volume: 121
  start-page: 1733
  year: 2011
  ident: 2023072609354097100_bib33
  article-title: CD98 expression modulates intestinal homeostasis, inflammation, and colitis-associated cancer in mice
  publication-title: J. Clin. Invest.
  doi: 10.1172/JCI44631
  contributor:
    fullname: Nguyen
– volume: 9
  start-page: 1967
  year: 2018
  ident: 2023072609354097100_bib20
  article-title: FIBCD1 Binds Aspergillus fumigatus and Regulates Lung Epithelial Response to Cell Wall Components
  publication-title: Front. Immunol.
  doi: 10.3389/fimmu.2018.01967
  contributor:
    fullname: Jepsen
– volume: 289
  start-page: 2880
  year: 2014
  ident: 2023072609354097100_bib43
  article-title: Crystal structure of the tetrameric fibrinogen-like recognition domain of fibrinogen C domain containing 1 (FIBCD1) protein
  publication-title: J. Biol. Chem.
  doi: 10.1074/jbc.M113.520577
  contributor:
    fullname: Shrive
– volume: 257
  start-page: 255
  year: 1994
  ident: 2023072609354097100_bib9
  article-title: The major secreted product of the whipworm, Trichuris, is a pore-forming protein
  publication-title: Proc. Biol. Sci.
  doi: 10.1098/rspb.1994.0123
  contributor:
    fullname: Drake
– volume: 8
  start-page: 1313
  year: 2015
  ident: 2023072609354097100_bib55
  article-title: The prostaglandin D2 receptor CRTH2 regulates accumulation of group 2 innate lymphoid cells in the inflamed lung
  publication-title: Mucosal Immunol.
  doi: 10.1038/mi.2015.21
  contributor:
    fullname: Wojno
– volume: 66
  start-page: 279
  year: 2007
  ident: 2023072609354097100_bib24
  article-title: The cell wall: a carbohydrate armour for the fungal cell
  publication-title: Mol. Microbiol.
  doi: 10.1111/j.1365-2958.2007.05872.x
  contributor:
    fullname: Latgé
– volume: 177
  start-page: 511
  year: 2006
  ident: 2023072609354097100_bib57
  article-title: Persistence and function of central and effector memory CD4+ T cells following infection with a gastrointestinal helminth
  publication-title: J. Immunol.
  doi: 10.4049/jimmunol.177.1.511
  contributor:
    fullname: Zaph
– volume: 549
  start-page: 282
  year: 2017
  ident: 2023072609354097100_bib22
  article-title: The neuropeptide neuromedin U stimulates innate lymphoid cells and type 2 inflammation
  publication-title: Nature.
  doi: 10.1038/nature23676
  contributor:
    fullname: Klose
– volume: 10
  start-page: 296
  year: 2016
  ident: 2023072609354097100_bib30
  article-title: Fungal Dysbiosis in Mucosa-associated Microbiota of Crohn’s Disease Patients
  publication-title: J. Crohn’s Colitis.
  doi: 10.1093/ecco-jcc/jjv209
  contributor:
    fullname: Liguori
– volume: 86
  start-page: 73
  year: 1983
  ident: 2023072609354097100_bib19
  article-title: Functional antigens of Trichuris muris released during in vitro maintenance: their immunogenicity and partial purification
  publication-title: Parasitology.
  doi: 10.1017/S0031182000057188
  contributor:
    fullname: Jenkins
– volume: 14
  start-page: 434
  year: 2016
  ident: 2023072609354097100_bib34
  article-title: Dimensions of biodiversity in the Earth mycobiome
  publication-title: Nat. Rev. Microbiol.
  doi: 10.1038/nrmicro.2016.59
  contributor:
    fullname: Peay
– volume: 48
  start-page: 513
  year: 2014
  ident: 2023072609354097100_bib27
  article-title: Dysbiosis of gut fungal microbiota is associated with mucosal inflammation in Crohn’s disease
  publication-title: J. Clin. Gastroenterol.
  doi: 10.1097/MCG.0000000000000035
  contributor:
    fullname: Li
– volume: 285
  start-page: 1229
  year: 2010
  ident: 2023072609354097100_bib47
  article-title: The recognition unit of FIBCD1 organizes into a noncovalently linked tetrameric structure and uses a hydrophobic funnel (S1) for acetyl group recognition
  publication-title: J. Biol. Chem.
  doi: 10.1074/jbc.M109.061523
  contributor:
    fullname: Thomsen
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Snippet Host-microbiota interactions are critical in regulating mammalian health and disease. In addition to bacteria, parasites, and viruses, beneficial communities...
Host–microbiota interactions are critical in regulating mammalian health and disease. In addition to bacteria, parasites, and viruses, beneficial communities...
In the present study, Moeller et al. identify a previously unrecognized pathway through which intestinal epithelial cells expressing the novel chitin-binding...
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Title Modulation of the fungal mycobiome is regulated by the chitin-binding receptor FIBCD1
URI https://www.ncbi.nlm.nih.gov/pubmed/31601676
https://search.proquest.com/docview/2305048082
https://pubmed.ncbi.nlm.nih.gov/PMC6888979
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