Use of dynamic energy budget and individual based models to simulate the dynamics of cultivated oyster populations
We successfully tested a Dynamic Energy Budget (DEB) model of the oyster Crassostrea gigas using published environmental data and growth data collected in Thau lagoon (France). Estimates of most DEB parameters were based on independent datasets and only two parameters were calibrated using our datas...
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| Published in | Journal of sea research Vol. 56; no. 2; pp. 140 - 155 |
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| Main Authors | , |
| Format | Journal Article |
| Language | English |
| Published |
Elsevier B.V
01.08.2006
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| Abstract | We successfully tested a Dynamic Energy Budget (DEB) model of the oyster
Crassostrea gigas using published environmental data and growth data collected in Thau lagoon (France). Estimates of most DEB parameters were based on independent datasets and only two parameters were calibrated using our datasets: the shape parameter, which was used to convert body volume into shell length, and the half-saturation coefficient, which controlled the functional response of assimilation to food concentration, represented by chlorophyll-a concentration. The DEB model proved to be robust and generic: it was able to reproduce oyster growth in Thau lagoon and other ecosystems. We also assessed population dynamics by coupling DEB equations and an Individual Based Model (IBM) of cultivated oyster populations. The results were compared with previously published simulations of harvested production and standing stock based on an empirical growth equation and a partial differential equation of population dynamics. Differences between the two studies were explained by the difference between the predictions of oyster growth with the empirical and the DEB models. We also accounted for growth variability between individuals and showed that IBM offers a powerful alternative to continuous equations when several physiological variables are involved. |
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| AbstractList | We successfully tested a Dynamic Energy Budget (DEB) model of the oyster Crassostrea gigas using published environmental data and growth data collected in Thau lagoon (France). Estimates of most DEB parameters were based on independent datasets and only two parameters were calibrated using our datasets: the shape parameter, which was used to convert body volume into shell length, and the half-saturation coefficient, which controlled the functional response of assimilation to food concentration, represented by chlorophyll-a concentration. The DEB model proved to be robust and generic: it was able to reproduce oyster growth in Thau lagoon and other ecosystems. We also assessed population dynamics by coupling DEB equations and an Individual Based Model (IBM) of cultivated oyster populations. The results were compared with previously published simulations of harvested production and standing stock based on an empirical growth equation and a partial differential equation of population dynamics. Differences between the two studies were explained by the difference between the predictions of oyster growth with the empirical and the DEB models. We also accounted for growth variability between individuals and showed that IBM offers a powerful alternative to continuous equations when several physiological variables are involved. We successfully tested a Dynamic Energy Budget (DEB) model of the oyster Crassostrea gigas using published environmental data and growth data collected in Thau lagoon (France). Estimates of most DEB parameters were based on independent datasets and only two parameters were calibrated using our datasets: the shape parameter, which was used to convert body volume into shell length, and the half-saturation coefficient, which controlled the functional response of assimilation to food concentration, represented by chlorophyll-a concentration. The DEB model proved to be robust and generic: it was able to reproduce oyster growth in Thau lagoon and other ecosystems. We also assessed population dynamics by coupling DEB equations and an Individual Based Model (IBM) of cultivated oyster populations. The results were compared with previously published simulations of harvested production and standing stock based on an empirical growth equation and a partial differential equation of population dynamics. Differences between the two studies were explained by the difference between the predictions of oyster growth with the empirical and the DEB models. We also accounted for growth variability between individuals and showed that IBM offers a powerful alternative to continuous equations when several physiological variables are involved. |
| Author | Gangnery, Aline Bacher, Cédric |
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| Cites_doi | 10.1016/S0304-3800(99)00172-6 10.1890/1051-0761(1999)009[0266:AMMFST]2.0.CO;2 10.1016/S0304-3800(03)00205-9 10.1016/S0022-0981(97)00173-1 10.1016/S0022-0981(97)00182-2 10.1016/S0304-3800(98)00182-3 10.1016/S0304-3800(00)00404-X 10.1139/f01-028 10.1016/j.seares.2006.03.001 10.2307/2389444 10.1016/S0079-6611(02)00035-6 10.1016/S0044-8486(03)00360-0 10.1016/0077-7579(93)90002-A 10.1034/j.1600-0706.2001.11313.x 10.2307/1352887 10.1016/j.seares.2005.06.001 10.1016/S0044-8486(96)01456-1 10.1016/S0044-8486(03)00413-7 10.1016/S1385-1101(01)00061-2 10.1016/S0304-3800(97)00133-6 10.1016/0044-8486(88)90214-1 10.1016/j.seares.2006.03.007 10.1016/S0044-8486(02)00351-4 10.1007/s10152-001-0092-9 10.1016/j.seares.2006.03.005 10.1002/num.1690040303 10.1016/S0304-3800(01)00282-4 10.1016/S0304-3800(99)00206-9 10.1051/alr:1997004 10.1023/A:1009995420368 |
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| Keywords | Dynamic energy budget Growth variability Harvested production Thau lagoon Crassostrea gigas |
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| Snippet | We successfully tested a Dynamic Energy Budget (DEB) model of the oyster
Crassostrea gigas using published environmental data and growth data collected in Thau... We successfully tested a Dynamic Energy Budget (DEB) model of the oyster Crassostrea gigas using published environmental data and growth data collected in Thau... |
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| SubjectTerms | Crassostrea gigas Dynamic energy budget Growth variability Harvested production Marine Thau lagoon |
| Title | Use of dynamic energy budget and individual based models to simulate the dynamics of cultivated oyster populations |
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