Feasibility and implications of using subject‐specific macromolecular spectra to model short echo time magnetic resonance spectroscopy data
Expert consensus recommends linear‐combination modeling (LCM) of 1H MR spectra with sequence‐specific simulated metabolite basis function and experimentally derived macromolecular (MM) basis functions. Measured MM basis functions are usually derived from metabolite‐nulled spectra averaged across a s...
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Published in | NMR in biomedicine Vol. 36; no. 3; pp. e4854 - n/a |
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Main Authors | , , , , , , , , , |
Format | Journal Article |
Language | English |
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01.03.2023
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Abstract | Expert consensus recommends linear‐combination modeling (LCM) of 1H MR spectra with sequence‐specific simulated metabolite basis function and experimentally derived macromolecular (MM) basis functions. Measured MM basis functions are usually derived from metabolite‐nulled spectra averaged across a small cohort. The use of subject‐specific instead of cohort‐averaged measured MM basis functions has not been studied widely. Furthermore, measured MM basis functions are not widely available to non‐expert users, who commonly rely on parameterized MM signals internally simulated by LCM software. To investigate the impact of the choice of MM modeling, this study, therefore, compares metabolite level estimates between different MM modeling strategies (cohort‐mean measured; subject‐specific measured; parameterized) in a lifespan cohort and characterizes its impact on metabolite–age associations. 100 conventional (TE = 30 ms) and metabolite‐nulled (TI = 650 ms) PRESS datasets, acquired from the medial parietal lobe in a lifespan cohort (20–70 years of age), were analyzed in Osprey. Short‐TE spectra were modeled in Osprey using six different strategies to consider the MM baseline. Fully tissue‐ and relaxation‐corrected metabolite levels were compared between MM strategies. Model performance was evaluated by model residuals, the Akaike information criterion (AIC), and the impact on metabolite–age associations. The choice of MM strategy had a significant impact on the mean metabolite level estimates and no major impact on variance. Correlation analysis revealed moderate‐to‐strong agreement between different MM strategies (r > 0.6). The lowest relative model residuals and AIC values were found for the cohort‐mean measured MM. Metabolite–age associations were consistently found for two major singlet signals (total creatine (tCr])and total choline (tCho)) for all MM strategies; however, findings for metabolites that are less distinguishable from the background signals associations depended on the MM strategy. A variance partition analysis indicated that up to 44% of the total variance was related to the choice of MM strategy. Additionally, the variance partition analysis reproduced the metabolite–age association for tCr and tCho found in the simpler correlation analysis. In summary, the inclusion of a single high signal‐to‐noise ratio MM basis function (cohort‐mean) in the short‐TE LCM leads to more lower model residuals and AIC values compared with MM strategies with more degrees of freedom (Gaussian parametrization) or subject‐specific MM information. Integration of multiple LCM analyses into a single statistical model potentially allows to identify the robustness in the detection of underlying effects (e.g., metabolite vs. age), reduces algorithm‐based bias, and estimates algorithm‐related variance.
Linear‐combination modeling results of short‐TE PRESS from a 100‐subject healthy aging cohort using different strategies to model macromolecular (MM) signals (parameterized vs. measured) analyzed with Osprey. The choice of MM strategy accounts for a majority of the observed variance in the metabolite estimates for tNAA and GSH. |
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AbstractList | Expert consensus recommends linear-combination modeling (LCM) of 1 H MR spectra with sequence-specific simulated metabolite basis function and experimentally derived macromolecular (MM) basis functions. Measured MM basis functions are usually derived from metabolite-nulled spectra averaged across a small cohort. The use of subject-specific instead of cohort-averaged measured MM basis functions has not been studied widely. Furthermore, measured MM basis functions are not widely available to non-expert users, who commonly rely on parameterized MM signals internally simulated by LCM software. To investigate the impact of the choice of MM modeling, this study, therefore, compares metabolite level estimates between different MM modeling strategies (cohort-mean measured; subject-specific measured; parameterized) in a lifespan cohort and characterizes its impact on metabolite-age associations. 100 conventional (TE = 30 ms) and metabolite-nulled (TI = 650 ms) PRESS datasets, acquired from the medial parietal lobe in a lifespan cohort (20-70 years of age), were analyzed in Osprey. Short-TE spectra were modeled in Osprey using six different strategies to consider the MM baseline. Fully tissue- and relaxation-corrected metabolite levels were compared between MM strategies. Model performance was evaluated by model residuals, the Akaike information criterion (AIC), and the impact on metabolite-age associations. The choice of MM strategy had a significant impact on the mean metabolite level estimates and no major impact on variance. Correlation analysis revealed moderate-to-strong agreement between different MM strategies (r > 0.6). The lowest relative model residuals and AIC values were found for the cohort-mean measured MM. Metabolite-age associations were consistently found for two major singlet signals (total creatine (tCr])and total choline (tCho)) for all MM strategies; however, findings for metabolites that are less distinguishable from the background signals associations depended on the MM strategy. A variance partition analysis indicated that up to 44% of the total variance was related to the choice of MM strategy. Additionally, the variance partition analysis reproduced the metabolite-age association for tCr and tCho found in the simpler correlation analysis. In summary, the inclusion of a single high signal-to-noise ratio MM basis function (cohort-mean) in the short-TE LCM leads to more lower model residuals and AIC values compared with MM strategies with more degrees of freedom (Gaussian parametrization) or subject-specific MM information. Integration of multiple LCM analyses into a single statistical model potentially allows to identify the robustness in the detection of underlying effects (e.g., metabolite vs. age), reduces algorithm-based bias, and estimates algorithm-related variance.Expert consensus recommends linear-combination modeling (LCM) of 1 H MR spectra with sequence-specific simulated metabolite basis function and experimentally derived macromolecular (MM) basis functions. Measured MM basis functions are usually derived from metabolite-nulled spectra averaged across a small cohort. The use of subject-specific instead of cohort-averaged measured MM basis functions has not been studied widely. Furthermore, measured MM basis functions are not widely available to non-expert users, who commonly rely on parameterized MM signals internally simulated by LCM software. To investigate the impact of the choice of MM modeling, this study, therefore, compares metabolite level estimates between different MM modeling strategies (cohort-mean measured; subject-specific measured; parameterized) in a lifespan cohort and characterizes its impact on metabolite-age associations. 100 conventional (TE = 30 ms) and metabolite-nulled (TI = 650 ms) PRESS datasets, acquired from the medial parietal lobe in a lifespan cohort (20-70 years of age), were analyzed in Osprey. Short-TE spectra were modeled in Osprey using six different strategies to consider the MM baseline. Fully tissue- and relaxation-corrected metabolite levels were compared between MM strategies. Model performance was evaluated by model residuals, the Akaike information criterion (AIC), and the impact on metabolite-age associations. The choice of MM strategy had a significant impact on the mean metabolite level estimates and no major impact on variance. Correlation analysis revealed moderate-to-strong agreement between different MM strategies (r > 0.6). The lowest relative model residuals and AIC values were found for the cohort-mean measured MM. Metabolite-age associations were consistently found for two major singlet signals (total creatine (tCr])and total choline (tCho)) for all MM strategies; however, findings for metabolites that are less distinguishable from the background signals associations depended on the MM strategy. A variance partition analysis indicated that up to 44% of the total variance was related to the choice of MM strategy. Additionally, the variance partition analysis reproduced the metabolite-age association for tCr and tCho found in the simpler correlation analysis. In summary, the inclusion of a single high signal-to-noise ratio MM basis function (cohort-mean) in the short-TE LCM leads to more lower model residuals and AIC values compared with MM strategies with more degrees of freedom (Gaussian parametrization) or subject-specific MM information. Integration of multiple LCM analyses into a single statistical model potentially allows to identify the robustness in the detection of underlying effects (e.g., metabolite vs. age), reduces algorithm-based bias, and estimates algorithm-related variance. Expert consensus recommends linear‐combination modeling (LCM) of 1 H MR spectra with sequence‐specific simulated metabolite basis function and experimentally derived macromolecular (MM) basis functions. Measured MM basis functions are usually derived from metabolite‐nulled spectra averaged across a small cohort. The use of subject‐specific instead of cohort‐averaged measured MM basis functions has not been studied widely. Furthermore, measured MM basis functions are not widely available to non‐expert users, who commonly rely on parameterized MM signals internally simulated by LCM software. To investigate the impact of the choice of MM modeling, this study, therefore, compares metabolite level estimates between different MM modeling strategies (cohort‐mean measured; subject‐specific measured; parameterized) in a lifespan cohort and characterizes its impact on metabolite–age associations. 100 conventional (TE = 30 ms) and metabolite‐nulled (TI = 650 ms) PRESS datasets, acquired from the medial parietal lobe in a lifespan cohort (20–70 years of age), were analyzed in Osprey. Short‐TE spectra were modeled in Osprey using six different strategies to consider the MM baseline. Fully tissue‐ and relaxation‐corrected metabolite levels were compared between MM strategies. Model performance was evaluated by model residuals, the Akaike information criterion (AIC), and the impact on metabolite–age associations. The choice of MM strategy had a significant impact on the mean metabolite level estimates and no major impact on variance. Correlation analysis revealed moderate‐to‐strong agreement between different MM strategies (r > 0.6). The lowest relative model residuals and AIC values were found for the cohort‐mean measured MM. Metabolite–age associations were consistently found for two major singlet signals (total creatine (tCr])and total choline (tCho)) for all MM strategies; however, findings for metabolites that are less distinguishable from the background signals associations depended on the MM strategy. A variance partition analysis indicated that up to 44% of the total variance was related to the choice of MM strategy. Additionally, the variance partition analysis reproduced the metabolite–age association for tCr and tCho found in the simpler correlation analysis. In summary, the inclusion of a single high signal‐to‐noise ratio MM basis function (cohort‐mean) in the short‐TE LCM leads to more lower model residuals and AIC values compared with MM strategies with more degrees of freedom (Gaussian parametrization) or subject‐specific MM information. Integration of multiple LCM analyses into a single statistical model potentially allows to identify the robustness in the detection of underlying effects (e.g., metabolite vs. age), reduces algorithm‐based bias, and estimates algorithm‐related variance. Expert consensus recommends linear‐combination modeling (LCM) of 1H MR spectra with sequence‐specific simulated metabolite basis function and experimentally derived macromolecular (MM) basis functions. Measured MM basis functions are usually derived from metabolite‐nulled spectra averaged across a small cohort. The use of subject‐specific instead of cohort‐averaged measured MM basis functions has not been studied widely. Furthermore, measured MM basis functions are not widely available to non‐expert users, who commonly rely on parameterized MM signals internally simulated by LCM software. To investigate the impact of the choice of MM modeling, this study, therefore, compares metabolite level estimates between different MM modeling strategies (cohort‐mean measured; subject‐specific measured; parameterized) in a lifespan cohort and characterizes its impact on metabolite–age associations. 100 conventional (TE = 30 ms) and metabolite‐nulled (TI = 650 ms) PRESS datasets, acquired from the medial parietal lobe in a lifespan cohort (20–70 years of age), were analyzed in Osprey. Short‐TE spectra were modeled in Osprey using six different strategies to consider the MM baseline. Fully tissue‐ and relaxation‐corrected metabolite levels were compared between MM strategies. Model performance was evaluated by model residuals, the Akaike information criterion (AIC), and the impact on metabolite–age associations. The choice of MM strategy had a significant impact on the mean metabolite level estimates and no major impact on variance. Correlation analysis revealed moderate‐to‐strong agreement between different MM strategies (r > 0.6). The lowest relative model residuals and AIC values were found for the cohort‐mean measured MM. Metabolite–age associations were consistently found for two major singlet signals (total creatine (tCr])and total choline (tCho)) for all MM strategies; however, findings for metabolites that are less distinguishable from the background signals associations depended on the MM strategy. A variance partition analysis indicated that up to 44% of the total variance was related to the choice of MM strategy. Additionally, the variance partition analysis reproduced the metabolite–age association for tCr and tCho found in the simpler correlation analysis. In summary, the inclusion of a single high signal‐to‐noise ratio MM basis function (cohort‐mean) in the short‐TE LCM leads to more lower model residuals and AIC values compared with MM strategies with more degrees of freedom (Gaussian parametrization) or subject‐specific MM information. Integration of multiple LCM analyses into a single statistical model potentially allows to identify the robustness in the detection of underlying effects (e.g., metabolite vs. age), reduces algorithm‐based bias, and estimates algorithm‐related variance. Expert consensus recommends linear‐combination modeling (LCM) of 1H MR spectra with sequence‐specific simulated metabolite basis function and experimentally derived macromolecular (MM) basis functions. Measured MM basis functions are usually derived from metabolite‐nulled spectra averaged across a small cohort. The use of subject‐specific instead of cohort‐averaged measured MM basis functions has not been studied widely. Furthermore, measured MM basis functions are not widely available to non‐expert users, who commonly rely on parameterized MM signals internally simulated by LCM software. To investigate the impact of the choice of MM modeling, this study, therefore, compares metabolite level estimates between different MM modeling strategies (cohort‐mean measured; subject‐specific measured; parameterized) in a lifespan cohort and characterizes its impact on metabolite–age associations. 100 conventional (TE = 30 ms) and metabolite‐nulled (TI = 650 ms) PRESS datasets, acquired from the medial parietal lobe in a lifespan cohort (20–70 years of age), were analyzed in Osprey. Short‐TE spectra were modeled in Osprey using six different strategies to consider the MM baseline. Fully tissue‐ and relaxation‐corrected metabolite levels were compared between MM strategies. Model performance was evaluated by model residuals, the Akaike information criterion (AIC), and the impact on metabolite–age associations. The choice of MM strategy had a significant impact on the mean metabolite level estimates and no major impact on variance. Correlation analysis revealed moderate‐to‐strong agreement between different MM strategies (r > 0.6). The lowest relative model residuals and AIC values were found for the cohort‐mean measured MM. Metabolite–age associations were consistently found for two major singlet signals (total creatine (tCr])and total choline (tCho)) for all MM strategies; however, findings for metabolites that are less distinguishable from the background signals associations depended on the MM strategy. A variance partition analysis indicated that up to 44% of the total variance was related to the choice of MM strategy. Additionally, the variance partition analysis reproduced the metabolite–age association for tCr and tCho found in the simpler correlation analysis. In summary, the inclusion of a single high signal‐to‐noise ratio MM basis function (cohort‐mean) in the short‐TE LCM leads to more lower model residuals and AIC values compared with MM strategies with more degrees of freedom (Gaussian parametrization) or subject‐specific MM information. Integration of multiple LCM analyses into a single statistical model potentially allows to identify the robustness in the detection of underlying effects (e.g., metabolite vs. age), reduces algorithm‐based bias, and estimates algorithm‐related variance. Linear‐combination modeling results of short‐TE PRESS from a 100‐subject healthy aging cohort using different strategies to model macromolecular (MM) signals (parameterized vs. measured) analyzed with Osprey. The choice of MM strategy accounts for a majority of the observed variance in the metabolite estimates for tNAA and GSH. Expert consensus recommends linear-combination modeling (LCM) of H MR spectra with sequence-specific simulated metabolite basis function and experimentally derived macromolecular (MM) basis functions. Measured MM basis functions are usually derived from metabolite-nulled spectra averaged across a small cohort. The use of subject-specific instead of cohort-averaged measured MM basis functions has not been studied widely. Furthermore, measured MM basis functions are not widely available to non-expert users, who commonly rely on parameterized MM signals internally simulated by LCM software. To investigate the impact of the choice of MM modeling, this study, therefore, compares metabolite level estimates between different MM modeling strategies (cohort-mean measured; subject-specific measured; parameterized) in a lifespan cohort and characterizes its impact on metabolite-age associations. 100 conventional (TE = 30 ms) and metabolite-nulled (TI = 650 ms) PRESS datasets, acquired from the medial parietal lobe in a lifespan cohort (20-70 years of age), were analyzed in Osprey. Short-TE spectra were modeled in Osprey using six different strategies to consider the MM baseline. Fully tissue- and relaxation-corrected metabolite levels were compared between MM strategies. Model performance was evaluated by model residuals, the Akaike information criterion (AIC), and the impact on metabolite-age associations. The choice of MM strategy had a significant impact on the mean metabolite level estimates and no major impact on variance. Correlation analysis revealed moderate-to-strong agreement between different MM strategies (r > 0.6). The lowest relative model residuals and AIC values were found for the cohort-mean measured MM. Metabolite-age associations were consistently found for two major singlet signals (total creatine (tCr])and total choline (tCho)) for all MM strategies; however, findings for metabolites that are less distinguishable from the background signals associations depended on the MM strategy. A variance partition analysis indicated that up to 44% of the total variance was related to the choice of MM strategy. Additionally, the variance partition analysis reproduced the metabolite-age association for tCr and tCho found in the simpler correlation analysis. In summary, the inclusion of a single high signal-to-noise ratio MM basis function (cohort-mean) in the short-TE LCM leads to more lower model residuals and AIC values compared with MM strategies with more degrees of freedom (Gaussian parametrization) or subject-specific MM information. Integration of multiple LCM analyses into a single statistical model potentially allows to identify the robustness in the detection of underlying effects (e.g., metabolite vs. age), reduces algorithm-based bias, and estimates algorithm-related variance. |
Author | Oeltzschner, Georg Gong, Tao Hui, Steve C. N. Zöllner, Helge J. Davies‐Jenkins, Christopher W. Murali‐Manohar, Saipavitra Chen, Weibo Wang, Guangbin Song, Yulu Edden, Richard A. E. |
Author_xml | – sequence: 1 givenname: Helge J. orcidid: 0000-0002-7148-292X surname: Zöllner fullname: Zöllner, Helge J. email: hzoelln2@jhmi.edu organization: Kennedy Krieger Institute – sequence: 2 givenname: Christopher W. orcidid: 0000-0002-6015-762X surname: Davies‐Jenkins fullname: Davies‐Jenkins, Christopher W. organization: Kennedy Krieger Institute – sequence: 3 givenname: Saipavitra orcidid: 0000-0002-4978-0736 surname: Murali‐Manohar fullname: Murali‐Manohar, Saipavitra organization: Kennedy Krieger Institute – sequence: 4 givenname: Tao orcidid: 0000-0001-9689-0420 surname: Gong fullname: Gong, Tao organization: Cheeloo College of Medicine – sequence: 5 givenname: Steve C. N. orcidid: 0000-0002-1523-4040 surname: Hui fullname: Hui, Steve C. N. organization: Kennedy Krieger Institute – sequence: 6 givenname: Yulu surname: Song fullname: Song, Yulu organization: Kennedy Krieger Institute – sequence: 7 givenname: Weibo surname: Chen fullname: Chen, Weibo organization: Philips Healthcare – sequence: 8 givenname: Guangbin orcidid: 0000-0002-3099-7273 surname: Wang fullname: Wang, Guangbin organization: Cheeloo College of Medicine – sequence: 9 givenname: Richard A. E. orcidid: 0000-0002-0671-7374 surname: Edden fullname: Edden, Richard A. E. organization: Kennedy Krieger Institute – sequence: 10 givenname: Georg orcidid: 0000-0003-3083-9811 surname: Oeltzschner fullname: Oeltzschner, Georg organization: Kennedy Krieger Institute |
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CitedBy_id | crossref_primary_10_1002_mrm_30061 crossref_primary_10_1002_nbm_5152 crossref_primary_10_1002_mrm_30110 crossref_primary_10_3389_fnins_2023_1258408 crossref_primary_10_1002_mrm_29895 crossref_primary_10_1002_mrm_30158 crossref_primary_10_1002_nbm_5056 crossref_primary_10_1016_j_jneumeth_2024_110206 |
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Keywords | aging, linear-combination modeling, macromolecules, short-TE MRS |
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Snippet | Expert consensus recommends linear‐combination modeling (LCM) of 1H MR spectra with sequence‐specific simulated metabolite basis function and experimentally... Expert consensus recommends linear‐combination modeling (LCM) of 1 H MR spectra with sequence‐specific simulated metabolite basis function and experimentally... Expert consensus recommends linear-combination modeling (LCM) of H MR spectra with sequence-specific simulated metabolite basis function and experimentally... Expert consensus recommends linear-combination modeling (LCM) of 1 H MR spectra with sequence-specific simulated metabolite basis function and experimentally... |
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SubjectTerms | Age aging, linear‐combination modeling, macromolecules, short‐TE MRS Algorithms Basis functions Biological products Brain - metabolism Choline Choline - metabolism Conserved sequence Correlation analysis Creatine Estimates Feasibility Studies Humans Impact analysis Life span Macromolecular Substances - metabolism Macromolecules Magnetic resonance spectroscopy Magnetic Resonance Spectroscopy - methods Mathematical models Mean Metabolites Parameterization Parietal lobe Receptors, Antigen, T-Cell - metabolism Signal-To-Noise Ratio Spectra Spectrum analysis Statistical models Variance analysis |
Title | Feasibility and implications of using subject‐specific macromolecular spectra to model short echo time magnetic resonance spectroscopy data |
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