Statistical Physics of Adaptation

Whether by virtue of being prepared in a slowly relaxing, high-free energy initial condition, or because they are constantly dissipating energy absorbed from a strong external drive, many systems subject to thermal fluctuations are not expected to behave in the way they would at thermal equilibrium....

Full description

Saved in:
Bibliographic Details
Published inPhysical review. X Vol. 6; no. 2; p. 021036
Main Authors Perunov, Nikolay, Marsland, Robert A., England, Jeremy L.
Format Journal Article
LanguageEnglish
Published College Park American Physical Society 01.06.2016
Subjects
Online AccessGet full text
ISSN2160-3308
2160-3308
DOI10.1103/PhysRevX.6.021036

Cover

Abstract Whether by virtue of being prepared in a slowly relaxing, high-free energy initial condition, or because they are constantly dissipating energy absorbed from a strong external drive, many systems subject to thermal fluctuations are not expected to behave in the way they would at thermal equilibrium. Rather, the probability of finding such a system in a given microscopic arrangement may deviate strongly from the Boltzmann distribution, raising the question of whether thermodynamics still has anything to tell us about which arrangements are the most likely to be observed. In this work, we build on past results governing nonequilibrium thermodynamics and define a generalized Helmholtz free energy that exactly delineates the various factors that quantitatively contribute to the relative probabilities of different outcomes in far-from-equilibrium stochastic dynamics. By applying this expression to the analysis of two examples—namely, a particle hopping in an oscillating energy landscape and a population composed of two types of exponentially growing self-replicators—we illustrate a simple relationship between outcome-likelihood and dissipative history. In closing, we discuss the possible relevance of such a thermodynamic principle for our understanding of self-organization in complex systems, paying particular attention to a possible analogy to the way evolutionary adaptations emerge in living things.
AbstractList Whether by virtue of being prepared in a slowly relaxing, high-free energy initial condition, or because they are constantly dissipating energy absorbed from a strong external drive, many systems subject to thermal fluctuations are not expected to behave in the way they would at thermal equilibrium. Rather, the probability of finding such a system in a given microscopic arrangement may deviate strongly from the Boltzmann distribution, raising the question of whether thermodynamics still has anything to tell us about which arrangements are the most likely to be observed. In this work, we build on past results governing nonequilibrium thermodynamics and define a generalized Helmholtz free energy that exactly delineates the various factors that quantitatively contribute to the relative probabilities of different outcomes in far-from-equilibrium stochastic dynamics. By applying this expression to the analysis of two examples—namely, a particle hopping in an oscillating energy landscape and a population composed of two types of exponentially growing self-replicators—we illustrate a simple relationship between outcome-likelihood and dissipative history. In closing, we discuss the possible relevance of such a thermodynamic principle for our understanding of self-organization in complex systems, paying particular attention to a possible analogy to the way evolutionary adaptations emerge in living things.
ArticleNumber 021036
Author Marsland, Robert A.
Perunov, Nikolay
England, Jeremy L.
Author_xml – sequence: 1
  givenname: Nikolay
  surname: Perunov
  fullname: Perunov, Nikolay
– sequence: 2
  givenname: Robert A.
  surname: Marsland
  fullname: Marsland, Robert A.
– sequence: 3
  givenname: Jeremy L.
  surname: England
  fullname: England, Jeremy L.
BookMark eNp9kEtLAzEUhYNUsNb-AHcV11PzzsyyFB-FguID3IVMHpoyTmoyCv33ZhwVcWHgknDvOV8u5xCM2tBaAI4RnCMEydnN8y7d2vfHOZ9DnBt8D4wx4rAgBJajX-8DME1pA_PhEFEhxuDkrlOdT53Xqpn1HK_TLLjZwqhtPwntEdh3qkl2-nVPwMPF-f3yqlhfX66Wi3WhSYm7gmAtrKhpX85VlivKaieUdZBZXOvaUMpcqakimBqtEC8NEwLyErOqMpBMwGrgmqA2chv9i4o7GZSXn40Qn6SKec_GSqIMhIQSBV1JHTNVplnsSKV5ZQhjmXU6sLYxvL7Z1MlNeIttXl9ixmBWMFplFRpUOoaUonU_vyIo-2Dld7CSyyHY7BF_PNoPOXVR-eYf5wdukn_N
CitedBy_id crossref_primary_10_1021_jacs_2c11945
crossref_primary_10_4236_ojpp_2021_112019
crossref_primary_10_1103_PhysRevE_100_062128
crossref_primary_10_1016_j_automatica_2019_05_017
crossref_primary_10_3389_fphys_2018_01966
crossref_primary_10_1103_PhysRevLett_119_038001
crossref_primary_10_1103_PhysRevE_98_032119
crossref_primary_10_7566_JPSJ_90_064002
crossref_primary_10_3390_e24121731
crossref_primary_10_1088_1367_2630_ab28be
crossref_primary_10_1038_s41598_020_71130_7
crossref_primary_10_1038_s41598_021_96048_6
crossref_primary_10_1103_PhysRevE_100_022414
crossref_primary_10_1103_PhysRevLett_124_050603
crossref_primary_10_34019_2596_3325_2018_v19_24659
crossref_primary_10_1103_PhysRevE_98_022403
crossref_primary_10_1063_5_0103151
crossref_primary_10_1103_PhysRevE_98_042110
crossref_primary_10_12693_APhysPolA_146_265
crossref_primary_10_1088_1361_6633_aab3ed
crossref_primary_10_4236_ojpp_2017_72009
crossref_primary_10_1021_acs_chemrev_9b00254
crossref_primary_10_7566_JPSJ_90_024003
crossref_primary_10_1007_s00018_023_04790_z
crossref_primary_10_3390_e22101137
crossref_primary_10_1017_pab_2022_7
crossref_primary_10_1103_PhysRevE_99_022139
Cites_doi 10.1140/epjb/e2008-00001-9
10.1146/annurev-conmatphys-062910-140506
10.1038/srep03047
10.1017/S0033583500000615
10.1103/PhysRevLett.78.2690
10.1038/nature09312
10.1103/PhysRevLett.108.150601
10.1103/PhysRevLett.109.120604
10.1098/rstb.2009.0295
10.1017/S0022112099007557
10.1103/PhysRevE.60.2721
10.1103/PhysRevLett.86.3463
10.1038/nature11591
10.1103/PhysRevE.73.046105
10.1063/1.4818538
10.1103/PhysRevLett.104.090601
10.1103/PhysRevLett.108.120601
10.1103/RevModPhys.65.851
10.1126/science.1207032
10.1103/RevModPhys.71.S396
10.1103/PhysRevLett.114.158101
10.2307/j.ctvjghw98
ContentType Journal Article
Copyright 2016. This work is licensed under http://creativecommons.org/licenses/by/3.0/ (the “License”). Notwithstanding the ProQuest Terms and Conditions, you may use this content in accordance with the terms of the License.
Copyright_xml – notice: 2016. This work is licensed under http://creativecommons.org/licenses/by/3.0/ (the “License”). Notwithstanding the ProQuest Terms and Conditions, you may use this content in accordance with the terms of the License.
DBID AAYXX
CITATION
3V.
7XB
88I
8FE
8FG
8FK
ABJCF
ABUWG
AFKRA
AZQEC
BENPR
BGLVJ
CCPQU
DWQXO
GNUQQ
HCIFZ
L6V
M2P
M7S
PHGZM
PHGZT
PIMPY
PKEHL
PQEST
PQGLB
PQQKQ
PQUKI
PRINS
PTHSS
Q9U
DOA
DOI 10.1103/PhysRevX.6.021036
DatabaseName CrossRef
ProQuest Central (Corporate)
ProQuest Central (purchase pre-March 2016)
Science Database (Alumni Edition)
ProQuest SciTech Collection
ProQuest Technology Collection
ProQuest Central (Alumni) (purchase pre-March 2016)
Materials Science & Engineering Collection
ProQuest Central (Alumni)
ProQuest Central UK/Ireland
ProQuest Central Essentials
ProQuest Central
Technology Collection
ProQuest One Community College
ProQuest Central Korea
ProQuest Central Student
SciTech Premium Collection
ProQuest Engineering Collection
Science Database
Engineering Database
ProQuest Central Premium
ProQuest One Academic (New)
Publicly Available Content Database
ProQuest One Academic Middle East (New)
ProQuest One Academic Eastern Edition (DO NOT USE)
ProQuest One Applied & Life Sciences
ProQuest One Academic
ProQuest One Academic UKI Edition
ProQuest Central China
Engineering collection
ProQuest Central Basic
DOAJ Directory of Open Access Journals
DatabaseTitle CrossRef
Publicly Available Content Database
ProQuest Central Student
Technology Collection
ProQuest One Academic Middle East (New)
ProQuest Central Essentials
ProQuest Central (Alumni Edition)
SciTech Premium Collection
ProQuest One Community College
ProQuest Central China
ProQuest Central
ProQuest One Applied & Life Sciences
ProQuest Engineering Collection
ProQuest Central Korea
ProQuest Central (New)
Engineering Collection
Engineering Database
ProQuest Science Journals (Alumni Edition)
ProQuest Central Basic
ProQuest Science Journals
ProQuest One Academic Eastern Edition
ProQuest Technology Collection
ProQuest SciTech Collection
ProQuest One Academic UKI Edition
Materials Science & Engineering Collection
ProQuest One Academic
ProQuest One Academic (New)
ProQuest Central (Alumni)
DatabaseTitleList
Publicly Available Content Database
Database_xml – sequence: 1
  dbid: DOA
  name: DOAJ Directory of Open Access Journals
  url: https://www.doaj.org/
  sourceTypes: Open Website
– sequence: 2
  dbid: 8FG
  name: ProQuest Technology Collection
  url: https://search.proquest.com/technologycollection1
  sourceTypes: Aggregation Database
DeliveryMethod fulltext_linktorsrc
Discipline Physics
EISSN 2160-3308
ExternalDocumentID oai_doaj_org_article_3ad00343a0f84f5d9a16e2f39c69d355
10_1103_PhysRevX_6_021036
GroupedDBID 3MX
5VS
88I
AAYXX
ABJCF
ABSSX
ABUWG
ADBBV
AENEX
AFGMR
AFKRA
AGDNE
ALMA_UNASSIGNED_HOLDINGS
AUAIK
AZQEC
BCNDV
BENPR
BGLVJ
CCPQU
CITATION
DWQXO
EBS
EJD
FRP
GNUQQ
GROUPED_DOAJ
HCIFZ
KQ8
M2P
M7S
M~E
OK1
PHGZM
PHGZT
PIMPY
PTHSS
ROL
S7W
3V.
7XB
8FE
8FG
8FK
L6V
PKEHL
PQEST
PQGLB
PQQKQ
PQUKI
PRINS
Q9U
PUEGO
ID FETCH-LOGICAL-c382t-32c7e7b4e7b4ff9e6a45bf7aef05e2bcbd445f8c4a324dca168d5770682599d03
IEDL.DBID BENPR
ISSN 2160-3308
IngestDate Wed Aug 27 01:30:32 EDT 2025
Fri Jul 25 11:49:08 EDT 2025
Thu Apr 24 22:59:21 EDT 2025
Tue Jul 01 01:33:15 EDT 2025
IsDoiOpenAccess true
IsOpenAccess true
IsPeerReviewed true
IsScholarly true
Issue 2
Language English
License http://creativecommons.org/licenses/by/3.0
LinkModel DirectLink
MergedId FETCHMERGED-LOGICAL-c382t-32c7e7b4e7b4ff9e6a45bf7aef05e2bcbd445f8c4a324dca168d5770682599d03
Notes ObjectType-Article-1
SourceType-Scholarly Journals-1
ObjectType-Feature-2
content type line 14
OpenAccessLink https://www.proquest.com/docview/2550553549?pq-origsite=%requestingapplication%&accountid=15518
PQID 2550553549
PQPubID 5161131
ParticipantIDs doaj_primary_oai_doaj_org_article_3ad00343a0f84f5d9a16e2f39c69d355
proquest_journals_2550553549
crossref_primary_10_1103_PhysRevX_6_021036
crossref_citationtrail_10_1103_PhysRevX_6_021036
ProviderPackageCode CITATION
AAYXX
PublicationCentury 2000
PublicationDate 2016-06-01
PublicationDateYYYYMMDD 2016-06-01
PublicationDate_xml – month: 06
  year: 2016
  text: 2016-06-01
  day: 01
PublicationDecade 2010
PublicationPlace College Park
PublicationPlace_xml – name: College Park
PublicationTitle Physical review. X
PublicationYear 2016
Publisher American Physical Society
Publisher_xml – name: American Physical Society
References PhysRevX.6.021036Cc8R1
PhysRevX.6.021036Cc9R1
C. W. Gardiner (PhysRevX.6.021036Cc16R1) 2003
PhysRevX.6.021036Cc4R1
PhysRevX.6.021036Cc19R1
PhysRevX.6.021036Cc5R1
PhysRevX.6.021036Cc6R1
PhysRevX.6.021036Cc17R1
PhysRevX.6.021036Cc7R1
PhysRevX.6.021036Cc18R1
PhysRevX.6.021036Cc15R1
PhysRevX.6.021036Cc13R1
PhysRevX.6.021036Cc14R1
PhysRevX.6.021036Cc11R1
PhysRevX.6.021036Cc23R1
PhysRevX.6.021036Cc12R1
PhysRevX.6.021036Cc21R1
PhysRevX.6.021036Cc10R1
PhysRevX.6.021036Cc20R1
PhysRevX.6.021036Cc1R1
PhysRevX.6.021036Cc2R1
PhysRevX.6.021036Cc3R1
M. A. Nowak (PhysRevX.6.021036Cc22R1) 2006
References_xml – ident: PhysRevX.6.021036Cc9R1
  doi: 10.1140/epjb/e2008-00001-9
– ident: PhysRevX.6.021036Cc11R1
  doi: 10.1146/annurev-conmatphys-062910-140506
– ident: PhysRevX.6.021036Cc23R1
  doi: 10.1038/srep03047
– ident: PhysRevX.6.021036Cc5R1
  doi: 10.1017/S0033583500000615
– ident: PhysRevX.6.021036Cc6R1
  doi: 10.1103/PhysRevLett.78.2690
– ident: PhysRevX.6.021036Cc3R1
  doi: 10.1038/nature09312
– ident: PhysRevX.6.021036Cc17R1
  doi: 10.1103/PhysRevLett.108.150601
– ident: PhysRevX.6.021036Cc13R1
  doi: 10.1103/PhysRevLett.109.120604
– ident: PhysRevX.6.021036Cc21R1
  doi: 10.1098/rstb.2009.0295
– ident: PhysRevX.6.021036Cc19R1
  doi: 10.1017/S0022112099007557
– ident: PhysRevX.6.021036Cc7R1
  doi: 10.1103/PhysRevE.60.2721
– ident: PhysRevX.6.021036Cc8R1
  doi: 10.1103/PhysRevLett.86.3463
– ident: PhysRevX.6.021036Cc4R1
  doi: 10.1038/nature11591
– ident: PhysRevX.6.021036Cc18R1
  doi: 10.1103/PhysRevE.73.046105
– ident: PhysRevX.6.021036Cc14R1
  doi: 10.1063/1.4818538
– ident: PhysRevX.6.021036Cc10R1
  doi: 10.1103/PhysRevLett.104.090601
– ident: PhysRevX.6.021036Cc12R1
  doi: 10.1103/PhysRevLett.108.120601
– ident: PhysRevX.6.021036Cc1R1
  doi: 10.1103/RevModPhys.65.851
– ident: PhysRevX.6.021036Cc20R1
  doi: 10.1126/science.1207032
– volume-title: Handbook of Stochastic Methods
  year: 2003
  ident: PhysRevX.6.021036Cc16R1
– ident: PhysRevX.6.021036Cc2R1
  doi: 10.1103/RevModPhys.71.S396
– ident: PhysRevX.6.021036Cc15R1
  doi: 10.1103/PhysRevLett.114.158101
– volume-title: Evolutionary Dynamics
  year: 2006
  ident: PhysRevX.6.021036Cc22R1
  doi: 10.2307/j.ctvjghw98
SSID ssj0000601477
Score 2.4330823
Snippet Whether by virtue of being prepared in a slowly relaxing, high-free energy initial condition, or because they are constantly dissipating energy absorbed from a...
SourceID doaj
proquest
crossref
SourceType Open Website
Aggregation Database
Enrichment Source
Index Database
StartPage 021036
SubjectTerms Absorption
Boltzmann distribution
Complex systems
Energy
Energy dissipation
Equilibrium
Free energy
Mathematical analysis
Nonequilibrium thermodynamics
Physical properties
Physics
Population
Statistical analysis
SummonAdditionalLinks – databaseName: DOAJ Directory of Open Access Journals
  dbid: DOA
  link: http://utb.summon.serialssolutions.com/2.0.0/link/0/eLvHCXMwrV1LSwMxEB6kIHgRn1itsoInYdt089ocq1iKoAex0FvI8yRtsdXfbx67tSDoxcNeQsJuZrIz30eGbwBuDNdGae5Kj5gOBEWpUmFMS21qqzRTyKd2QE_PbDIljzM622r1FWvCsjxwNtwAKxs1VHBYVRNPrVBD5iqPhWHChmQZoy8SaItM5RgcoD_nzTXmEOFBLKh8cZ-zPutHmpMkmb8TUdLr_xGOU44ZH8B-Aw6LUf6oQ9hx8yPYTUWaZnUM1xEZJmHlMKkZLRa-GFm1zDfqJzAdP7zeT8qmxUFpcF2tS1wZ7rgm8fFeOKYI1Z4r5xF1lTbaEkJ9bYgKwMeasPfaUs4RC8ROCIvwKXTmi7k7g8L6oY1aUs5bTqjAGiOneWVpCGDO16wLqN2vNI3-d2xD8SYTD0BYtiaSTGYTdeF2s2SZxS9-m3wXjbiZGHWr00Dwpmy8Kf_yZhd6rQtk8zOtZBVZFMWByZ7_xzsuYC-gHpbrvXrQWb9_uMuALNb6Kh2iL-P6zF0
  priority: 102
  providerName: Directory of Open Access Journals
Title Statistical Physics of Adaptation
URI https://www.proquest.com/docview/2550553549
https://doaj.org/article/3ad00343a0f84f5d9a16e2f39c69d355
Volume 6
hasFullText 1
inHoldings 1
isFullTextHit
isPrint
link http://utb.summon.serialssolutions.com/2.0.0/link/0/eLvHCXMwfV1LSwMxEB60IngRn1itpYInYTXdvHYPIq20imCRotBbyNOLtLWt_n6TbLYeBA97yc4eMplMvsnMfgNwqbnSUnGbOcSUD1CkzCTGNFO6MFIxiVxsB_Q8Yo9v5GlCJxswqv-FCWWVtU-MjtrMdLgjv8kDlKbYhzN3888sdI0K2dW6hYZMrRXMbaQY24Qt75ILb_db_cHoZby-dQnsI4TzlN7sInwTCi3H9ntyza5D-BOpmn8PqMjj_8dNx7NnuAe7CTR2etUq78OGnR7Adize1MtDuAiIMRIue6E02pm5Ts_IeZVpP4K34eD1_jFLrQ8yjYt8leFcc8sVCY9zpWWSUOW4tA5RmyutDCHUFZpID4iMll1WGMo5Yj7gK0uD8DE0prOpPYGOcV0TOKasM5zQEiuMrOK5od6xWVewJqB6vkInXvDQnuJDxPgAYVGrSDBRqagJV-tP5hUpxn_C_aDEtWDgs44Ds8W7SNtDYGkCUw72tlEQR03pZ2Rzh0vNSuMhURNa9RKItMmW4tckTv9_fQY7HuewqsKrBY3V4sueeyyxUm3YLIYP7WQm7RiR_wB6o8yX
linkProvider ProQuest
linkToHtml http://utb.summon.serialssolutions.com/2.0.0/link/0/eLvHCXMwtV1NTxsxEB1RECoXRAtV0wLdSu0FaRNn_bV7QAha0lCSHBCRcnP92QtK0iQF8af4jdje3eSAxC2HvXi9K3k8tt_Y4_cAvmmutFTcpg4x5QMUKVOJMU2Vzo1UTCIX5YD6A9Ydkt8jOtqAp_ouTEirrOfEOFGbiQ575K0sQGmKfThzNv2XBtWocLpaS2iUbnFtHx98yDY_vfrp-_d7lnUub39000pVINU4zxYpzjS3XJHwOFdYJglVjkvrELWZ0soQQl2uifRYw2jZZrmhnCPmY6miMAj7_76BLYJxEaQi8s6v5Z5O4DYhnFeHp22EWyGN88bej5qsGYKrSAS9Wv6iSsCLRSCubJ092K0gaXJe-tA72LDj97AdU0P1fB--Bjwa6Zx9pao0mbjk3MhpeY5_AMO1mOADbI4nY_sREuPaJjBYWWc4oQVWGFnFM0P9tGldzhqA6vYKXbGOB_GLOxGjD4RFbSLBRGmiBpwsP5mWlBuvVb4IRlxWDGzZsWAy-yuqwSewNIGHB3vPy4mjpvAtspnDhWaF8YCrAYd1F4hqCM_FyuE-vf76C7zt3vZ7onc1uP4MOx5RsTKX7BA2F7P_9sijloU6jq6SwJ91--YzxCoCHg
openUrl ctx_ver=Z39.88-2004&ctx_enc=info%3Aofi%2Fenc%3AUTF-8&rfr_id=info%3Asid%2Fsummon.serialssolutions.com&rft_val_fmt=info%3Aofi%2Ffmt%3Akev%3Amtx%3Ajournal&rft.genre=article&rft.atitle=Statistical+Physics+of+Adaptation&rft.jtitle=Physical+review.+X&rft.au=Perunov%2C+Nikolay&rft.au=Marsland%2C+Robert+A&rft.au=England%2C+Jeremy+L&rft.date=2016-06-01&rft.pub=American+Physical+Society&rft.eissn=2160-3308&rft.volume=6&rft.issue=2&rft_id=info:doi/10.1103%2FPhysRevX.6.021036
thumbnail_l http://covers-cdn.summon.serialssolutions.com/index.aspx?isbn=/lc.gif&issn=2160-3308&client=summon
thumbnail_m http://covers-cdn.summon.serialssolutions.com/index.aspx?isbn=/mc.gif&issn=2160-3308&client=summon
thumbnail_s http://covers-cdn.summon.serialssolutions.com/index.aspx?isbn=/sc.gif&issn=2160-3308&client=summon