Genome-Wide SNP Analysis Reveals Distinct Origins of Trypanosoma evansi and Trypanosoma equiperdum

Trypanosomes cause a variety of diseases in man and domestic animals in Africa, Latin America, and Asia. In the Trypanozoon subgenus, Trypanosoma brucei gambiense and Trypanosoma brucei rhodesiense cause human African trypanosomiasis, whereas Trypanosoma brucei brucei, Trypanosoma evansi, and Trypan...

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Published inGenome biology and evolution Vol. 9; no. 8; pp. 1990 - 1997
Main Authors Cuypers, Bart, Van den Broeck, Frederik, Van Reet, Nick, Meehan, Conor J, Cauchard, Julien, Wilkes, Jonathan M, Claes, Filip, Goddeeris, Bruno, Birhanu, Hadush, Dujardin, Jean-Claude, Laukens, Kris, Büscher, Philippe, Deborggraeve, Stijn
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LanguageEnglish
Published England Oxford University Press 01.08.2017
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Abstract Trypanosomes cause a variety of diseases in man and domestic animals in Africa, Latin America, and Asia. In the Trypanozoon subgenus, Trypanosoma brucei gambiense and Trypanosoma brucei rhodesiense cause human African trypanosomiasis, whereas Trypanosoma brucei brucei, Trypanosoma evansi, and Trypanosoma equiperdum are responsible for nagana, surra, and dourine in domestic animals, respectively. The genetic relationships between T. evansi and T. equiperdum and other Trypanozoon species remain unclear because the majority of phylogenetic analyses has been based on only a few genes. In this study, we have conducted a phylogenetic analysis based on genome-wide SNP analysis comprising 56 genomes from the Trypanozoon subgenus. Our data reveal that T. equiperdum has emerged at least once in Eastern Africa and T. evansi at two independent occasions in Western Africa. The genomes within the T. equiperdum and T. evansi monophyletic clusters show extremely little variation, probably due to the clonal spread linked to the independence from tsetse flies for their transmission.
AbstractList Trypanosomes cause a variety of diseases in man and domestic animals in Africa, Latin America, and Asia. In the Trypanozoon subgenus, Trypanosoma brucei gambiense and Trypanosoma brucei rhodesiense cause human African trypanosomiasis, whereas Trypanosoma brucei brucei, Trypanosoma evansi, and Trypanosoma equiperdum are responsible for nagana, surra, and dourine in domestic animals, respectively. The genetic relationships between T. evansi and T. equiperdum and other Trypanozoon species remain unclear because the majority of phylogenetic analyses has been based on only a few genes. In this study, we have conducted a phylogenetic analysis based on genome-wide SNP analysis comprising 56 genomes from the Trypanozoon subgenus. Our data reveal that T. equiperdum has emerged at least once in Eastern Africa and T. evansi at two independent occasions in Western Africa. The genomes within the T. equiperdum and T. evansi monophyletic clusters show extremely little variation, probably due to the clonal spread linked to the independence from tsetse flies for their transmission.
Trypanosomes cause a variety of diseases in man and domestic animals in Africa, Latin America, and Asia. In the Trypanozoon subgenus, Trypanosoma brucei gambiense and Trypanosoma brucei rhodesiense cause human African trypanosomiasis, whereas Trypanosoma brucei brucei , Trypanosoma evansi , and Trypanosoma equiperdum are responsible for nagana, surra, and dourine in domestic animals, respectively. The genetic relationships between T. evansi and T. equiperdum and other Trypanozoon species remain unclear because the majority of phylogenetic analyses has been based on only a few genes. In this study, we have conducted a phylogenetic analysis based on genome-wide SNP analysis comprising 56 genomes from the Trypanozoon subgenus. Our data reveal that T. equiperdum has emerged at least once in Eastern Africa and T. evansi at two independent occasions in Western Africa. The genomes within the T. equiperdum and T. evansi monophyletic clusters show extremely little variation, probably due to the clonal spread linked to the independence from tsetse flies for their transmission.
Author Wilkes, Jonathan M
Deborggraeve, Stijn
Van Reet, Nick
Van den Broeck, Frederik
Cuypers, Bart
Dujardin, Jean-Claude
Laukens, Kris
Goddeeris, Bruno
Büscher, Philippe
Birhanu, Hadush
Meehan, Conor J
Claes, Filip
Cauchard, Julien
AuthorAffiliation 7 College of Veterinary Medicine, Mekelle University, Tigray, Ethiopia
4 Wellcome Trust Centre of Molecular Parasitology, University of Glasgow, United Kingdom
8 Department of Biomedical Sciences, University of Antwerp, Antwerp, Belgium
2 Department of Mathematics and Computer Sciences, University of Antwerp, Belgium
5 Food and Agriculture Organization of the United Nations (FAO), Regional Office for Asia and the Pacific, Bangkok, Thailand
1 Biomedical Sciences Department, Institute of Tropical Medicine, Antwerp, Belgium
3 Anses Dozulé Laboratory for Equine Diseases, Goustranville, France
6 Faculty of Bioscience Engineering, KU Leuven, Belgium
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Issue 8
Keywords Trypanosoma evansi
Trypanozoon
whole genome sequencing
Trypansoma equiperdum
phylogeny
SNP analysis
Language English
License The Author 2017. Published by Oxford University Press on behalf of the Society for Molecular Biology and Evolution.
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Snippet Trypanosomes cause a variety of diseases in man and domestic animals in Africa, Latin America, and Asia. In the Trypanozoon subgenus, Trypanosoma brucei...
Trypanosomes cause a variety of diseases in man and domestic animals in Africa, Latin America, and Asia. In the Trypanozoon subgenus, Trypanosoma brucei...
SourceID pubmedcentral
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crossref
pubmed
SourceType Open Access Repository
Aggregation Database
Index Database
StartPage 1990
SubjectTerms Africa, Eastern
Africa, Western
Genes, Protozoan
Genome, Protozoan
Genome-Wide Association Study
Phylogeny
Polymorphism, Single Nucleotide
Trypanosoma - genetics
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Title Genome-Wide SNP Analysis Reveals Distinct Origins of Trypanosoma evansi and Trypanosoma equiperdum
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