Comparative transcriptome analysis of the climacteric of apple fruit uncovers the involvement of transcription factors affecting ethylene biosynthesis

Apple (Malus domestica) fruit generally undergoes a climacteric. During its ripening process, there is a peak in ethylene release and its firmness simultaneously decreases. Although more in-depth research into the mechanism of climacteric-type fruit ripening is being carried out, some aspects remain...

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Published inHorticultural plant journal Vol. 9; no. 4; pp. 659 - 669
Main Authors Li, Tong, Zhang, Xiao, Wei, Yun, Xu, Yaxiu, Liu, Weiting, Li, Hongjian, Yang, Guangxin, Wang, Aide, Wang, Xiaoxue
Format Journal Article
LanguageEnglish
Published Elsevier B.V 01.08.2023
Liaoning Institute of Pomology,Xiongyue,Liaoning,115009,China%Rice Research Institute,Shenyang Agricultural University,Shenyang,Liaoning 110866,China
Rice Research Institute,Shenyang Agricultural University,Shenyang,Liaoning 110866,China
College of Horticulture,Shenyang Agricultural University,Shenyang,Liaoning 110866,China%College of Horticulture,Shenyang Agricultural University,Shenyang,Liaoning 110866,China%College of Horticulture,Shenyang Agricultural University,Shenyang,Liaoning 110866,China
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Abstract Apple (Malus domestica) fruit generally undergoes a climacteric. During its ripening process, there is a peak in ethylene release and its firmness simultaneously decreases. Although more in-depth research into the mechanism of climacteric-type fruit ripening is being carried out, some aspects remain unclear. In this study, we compared the transcriptomes of 0-Pre and 15-Post (pre- and post-climacteric fruit), and 15-Post and 15-MCP [fruit treated with 1-MCP (1-methylcyclopropene)]. Various transcription factors, such as MADS-box, ERF, NAC, Dof and SHF were identified among the DEGs (differential gene expressions). Furthermore, these transcription factors were selected for further validation analysis by qRT-PCR. Moreover, yeast one hybrid (Y1H), β-glucuronidase (GUS) transactivation assay and dual-luciferase reporter assay showed that MdAGL30, MdAGL104, MdERF008, MdNAC71, MdDof1.2, MdHSFB2a and MdHSFB3 bound to MdACS1 promoter and directly regulated its transcription, thereby regulating ethylene biosynthesis in apple fruit. Our results provide useful information and new insights for research on apple fruit ripening.
AbstractList Apple(Malus domestica)fruit generally undergoes a climacteric.During its ripening process,there is a peak in ethylene release and its firmness simultaneously decreases.Although more in-depth research into the mechanism of climacteric-type fruit ripening is being carried out,some aspects remain unclear.In this study,we compared the transcriptomes of 0-Pre and 15-Post(pre-and post-climacteric fruit),and 15-Post and 15-MCP[fruit treated with 1-MCP(1-methylcyclopropene)].Various transcription factors,such as MADS-box,ERF,NAC,Dof and SHF were identified among the DEGs(differential gene expressions).Furthermore,these transcription factors were selected for further validation analysis by qRT-PCR.Moreover,yeast one hybrid(Y1H),β-glucuronidase(GUS)transactivation assay and dual-luciferase reporter assay showed that MdAGL30,MdAGL104,MdERF008,MdNAC71,MdDof1.2,MdHSFB2a and MdHSFB3 bound to MdACS1 promoter and directly regulated its transcription,thereby regulating ethylene biosynthesis in apple fruit.Our results provide useful information and new insights for research on apple fruit ripening.
Author Zhang, Xiao
Li, Tong
Liu, Weiting
Wei, Yun
Xu, Yaxiu
Wang, Aide
Yang, Guangxin
Li, Hongjian
Wang, Xiaoxue
AuthorAffiliation Rice Research Institute,Shenyang Agricultural University,Shenyang,Liaoning 110866,China;College of Horticulture,Shenyang Agricultural University,Shenyang,Liaoning 110866,China%College of Horticulture,Shenyang Agricultural University,Shenyang,Liaoning 110866,China%College of Horticulture,Shenyang Agricultural University,Shenyang,Liaoning 110866,China;Liaoning Institute of Pomology,Xiongyue,Liaoning,115009,China%Rice Research Institute,Shenyang Agricultural University,Shenyang,Liaoning 110866,China
AuthorAffiliation_xml – name: Rice Research Institute,Shenyang Agricultural University,Shenyang,Liaoning 110866,China;College of Horticulture,Shenyang Agricultural University,Shenyang,Liaoning 110866,China%College of Horticulture,Shenyang Agricultural University,Shenyang,Liaoning 110866,China%College of Horticulture,Shenyang Agricultural University,Shenyang,Liaoning 110866,China;Liaoning Institute of Pomology,Xiongyue,Liaoning,115009,China%Rice Research Institute,Shenyang Agricultural University,Shenyang,Liaoning 110866,China
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Keywords Apple
Fruit ripening
Transcription factor
RNA-Seq
Ethylene
Language English
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Liaoning Institute of Pomology,Xiongyue,Liaoning,115009,China%Rice Research Institute,Shenyang Agricultural University,Shenyang,Liaoning 110866,China
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  article-title: Isolation of heat shock factor HSFA1a-binding sites in vivo revealed variations of heat shock elements in Arabidopsis thaliana
  publication-title: Plant Cell Physiol
  doi: 10.1093/pcp/pcn105
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Snippet Apple (Malus domestica) fruit generally undergoes a climacteric. During its ripening process, there is a peak in ethylene release and its firmness...
Apple(Malus domestica)fruit generally undergoes a climacteric.During its ripening process,there is a peak in ethylene release and its firmness simultaneously...
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elsevier
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Enrichment Source
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Publisher
StartPage 659
SubjectTerms Apple
Ethylene
Fruit ripening
RNA-Seq
Transcription factor
Title Comparative transcriptome analysis of the climacteric of apple fruit uncovers the involvement of transcription factors affecting ethylene biosynthesis
URI https://dx.doi.org/10.1016/j.hpj.2022.12.002
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