Analysis of genetic variation of porcine circovirus type 2 within pig populations in central China
In order to investigate the genetic diversity of porcine circovirus type 2 (PCV2), 284 clinical tissue samples were collected from different pig farms in central China from 2015 to 2017. A total of 162 tissue samples (162/284, 57.04%) were positive for PCV2 by PCR, and subsequently, the complete gen...
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| Published in | Archives of virology Vol. 164; no. 5; pp. 1445 - 1451 |
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| Main Authors | , , , , , , |
| Format | Journal Article |
| Language | English |
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Vienna
Springer Vienna
01.05.2019
Springer Nature B.V |
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| Abstract | In order to investigate the genetic diversity of porcine circovirus type 2 (PCV2), 284 clinical tissue samples were collected from different pig farms in central China from 2015 to 2017. A total of 162 tissue samples (162/284, 57.04%) were positive for PCV2 by PCR, and subsequently, the complete genome of 36 of these PCV2 samples was cloned and sequenced. The sequencing results showed that 37 complete PCV2 sequences were obtained from 36 PCV2-positive clinical samples. These PCV2 strains were relatively conserved and extremely homologous to the representative classical PCV2 strains. Of these, 20 PCV2 strains belonged to genotype PCV2d, 14 belonged to PCV2b, and three others belonged to PCV2a. Coinfection with PCV2b and PCV2d was identified in one sample (DF-2). These results show that PCV2d may be gradually replacing PCV2b as the predominant PCV2 genotype in central China, and that other genotypes also exist in individual regions. The results of this study will aid in our understanding of the molecular epidemiology of PCV2. |
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| AbstractList | In order to investigate the genetic diversity of porcine circovirus type 2 (PCV2), 284 clinical tissue samples were collected from different pig farms in central China from 2015 to 2017. A total of 162 tissue samples (162/284, 57.04%) were positive for PCV2 by PCR, and subsequently, the complete genome of 36 of these PCV2 samples was cloned and sequenced. The sequencing results showed that 37 complete PCV2 sequences were obtained from 36 PCV2-positive clinical samples. These PCV2 strains were relatively conserved and extremely homologous to the representative classical PCV2 strains. Of these, 20 PCV2 strains belonged to genotype PCV2d, 14 belonged to PCV2b, and three others belonged to PCV2a. Coinfection with PCV2b and PCV2d was identified in one sample (DF-2). These results show that PCV2d may be gradually replacing PCV2b as the predominant PCV2 genotype in central China, and that other genotypes also exist in individual regions. The results of this study will aid in our understanding of the molecular epidemiology of PCV2. |
| Author | Han, Hao-Ying Zhao, Yu Chen, Hong-Ying Zheng, Lan-Lan Zheng, Hui-Hua Tian, Run-Bo Xu, Peng-Li |
| Author_xml | – sequence: 1 givenname: Peng-Li surname: Xu fullname: Xu, Peng-Li organization: College of Animal Science and Veterinary Medicine, Henan Agricultural University – sequence: 2 givenname: Yu surname: Zhao fullname: Zhao, Yu organization: College of Animal Science and Veterinary Medicine, Henan Agricultural University – sequence: 3 givenname: Hui-Hua surname: Zheng fullname: Zheng, Hui-Hua organization: College of Animal Science and Veterinary Medicine, Henan Agricultural University – sequence: 4 givenname: Run-Bo surname: Tian fullname: Tian, Run-Bo organization: College of Animal Science and Veterinary Medicine, Henan Agricultural University – sequence: 5 givenname: Hao-Ying surname: Han fullname: Han, Hao-Ying organization: College of Animal Science and Veterinary Medicine, Henan Agricultural University – sequence: 6 givenname: Hong-Ying surname: Chen fullname: Chen, Hong-Ying email: chhy927@163.com organization: College of Animal Science and Veterinary Medicine, Henan Agricultural University, Zhengzhou Major Pig Disease Prevention and Control Laboratory – sequence: 7 givenname: Lan-Lan surname: Zheng fullname: Zheng, Lan-Lan email: zhll2000@sohu.com organization: College of Animal Science and Veterinary Medicine, Henan Agricultural University |
| BackLink | https://www.ncbi.nlm.nih.gov/pubmed/30888560$$D View this record in MEDLINE/PubMed |
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| Title | Analysis of genetic variation of porcine circovirus type 2 within pig populations in central China |
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