ChIPseeker: an R/Bioconductor package for ChIP peak annotation, comparison and visualization

• Published in: Bioinformatics Vol. 31; no. 14; pp. 2382 - 2383
• Main Authors: Yu, Guangchuang, Wang, Li-Gen, He, Qing-Yu
• Format: Journal Article
• Language: English
• Published: England 15.07.2015
• Subjects: Annotations; Binding Sites; Bioinformatics; Chips; Chromatin Immunoprecipitation; Computer Graphics; Data processing; DNA - chemistry; DNA - metabolism; High-Throughput Nucleotide Sequencing; HTML; Licenses; Molecular Sequence Annotation; Packages; Sequence Analysis, DNA; Software; Transcription Factors - metabolism; Transcription Initiation Site

ChIPseeker is an R package for annotating ChIP-seq data analysis. It supports annotating ChIP peaks and provides functions to visualize ChIP peaks coverage over chromosomes and profiles of peaks binding to TSS regions. Comparison of ChIP peak profiles and annotation are also supported. Moreover, it...