SIMVI disentangles intrinsic and spatial-induced cellular states in spatial omics data - Dong, Mingze; Su, David G.; Kluger, Harriet; Fan, Rong; Kluger, Yuval (Nature communications, 2025)
Keywords: 631/114/1305; 631/114/2397; 631/114/2415; 631/114/794; Annotations; B-Lymphocytes - metabolism; Biological activity; Cell Communication; Cellular communication; Computational Biology - methods; Deep Learning; Epigenetics; Gene expression; Germinal Center - cytology; Germinal Center - metabolism; Germinal centers; Humanities and Social Sciences; Humans; Interaction models; Lymphocytes B; Macrophages; Macrophages - metabolism; Melanoma; Melanoma - genetics; Melanoma - pathology; Microenvironments; multidisciplinary; Palatine Tonsil - cytology; Science; Science (multidisciplinary); Single-Cell Analysis - methods; Spatial analysis; Spatial data; Structure-function relationships; Tumor microenvironment; Tumor Microenvironment - genetics; Tumors