The first complete mitochondrial genome of stag beetle from China, Prosopocoilus gracilis (Coleoptera, Lucanidae)
The complete mitochondrial genome (mitogenome) of Prosopocoilus gracilis (Coleoptera: Lucanidae) that is endemic to Southern China is determined. The circular genome is 736 bp in length and comprises 13 protein-coding genes, 22 tRNA, 2 rRNA genes and a control region. Gene order is identical to that...
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Published in | Mitochondrial DNA. Part A. DNA mapping, sequencing, and analysis Vol. 27; no. 4; pp. 2633 - 2634 |
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Main Authors | , , , |
Format | Journal Article |
Language | English |
Published |
England
Taylor & Francis
03.07.2016
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Abstract | The complete mitochondrial genome (mitogenome) of Prosopocoilus gracilis (Coleoptera: Lucanidae) that is endemic to Southern China is determined. The circular genome is 736 bp in length and comprises 13 protein-coding genes, 22 tRNA, 2 rRNA genes and a control region. Gene order is identical to that of the putative ancestral arrangement of insects. The nucleotide composition of heavy strand is A (36.6%), C (22.6%), T (29.5%) and G (11.3%). All protein-coding genes start with a typical ATN codon except for the gene COI that uses AAC as the start codon. tRNA-Ser (AGN) uses the anticodon UCU instead of the commonly used GCU. Both maximum likelihood and Bayesian analyses support the monophyly of Lucanidae and the sister relationship of Nigidionus and the remaining sampled genera. Two species of Prosopocoilus were not recovered as a monophyletic group. |
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AbstractList | The complete mitochondrial genome (mitogenome) of Prosopocoilus gracilis (Coleoptera: Lucanidae) that is endemic to Southern China is determined. The circular genome is 736 bp in length and comprises 13 protein-coding genes, 22 tRNA, 2 rRNA genes and a control region. Gene order is identical to that of the putative ancestral arrangement of insects. The nucleotide composition of heavy strand is A (36.6%), C (22.6%), T (29.5%) and G (11.3%). All protein-coding genes start with a typical ATN codon except for the gene COI that uses AAC as the start codon. tRNA-Ser (AGN) uses the anticodon UCU instead of the commonly used GCU. Both maximum likelihood and Bayesian analyses support the monophyly of Lucanidae and the sister relationship of Nigidionus and the remaining sampled genera. Two species of Prosopocoilus were not recovered as a monophyletic group. |
Author | Cao, Yu-Yan Fang, Jie Wan, Xia Wu, Yuan-Yuan |
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BackLink | https://www.ncbi.nlm.nih.gov/pubmed/26024142$$D View this record in MEDLINE/PubMed |
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Cites_doi | 10.1093/molbev/msn083 10.1093/molbev/msu154 10.3109/19401736.2013.825788 10.1093/sysbio/syp037 10.1093/bioinformatics/17.8.754 10.1146/annurev-ento-011613-162007 10.1093/molbev/msn198 10.1093/nar/27.8.1767 |
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References | e_1_3_2_9_1 e_1_3_2_8_1 e_1_3_2_7_1 e_1_3_2_2_1 e_1_3_2_6_1 Zhong F (e_1_3_2_10_1) 2014; 39 e_1_3_2_5_1 e_1_3_2_4_1 e_1_3_2_3_1 |
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SubjectTerms | Animals Bayes Theorem China Codon, Initiator - genetics Coleoptera - classification Coleoptera - genetics Genome, Insect - genetics Genome, Mitochondrial - genetics High-Throughput Nucleotide Sequencing Long PCR mitogenome next-generation sequencing Phylogeny Prosopocoilus gracilis RNA, Ribosomal - genetics RNA, Transfer - genetics Sequence Analysis, DNA - methods |
Title | The first complete mitochondrial genome of stag beetle from China, Prosopocoilus gracilis (Coleoptera, Lucanidae) |
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