CORUM: the comprehensive resource of mammalian protein complexes—2019
Abstract CORUM is a database that provides a manually curated repository of experimentally characterized protein complexes from mammalian organisms, mainly human (67%), mouse (15%) and rat (10%). Given the vital functions of these macromolecular machines, their identification and functional characte...
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| Published in | Nucleic acids research Vol. 47; no. D1; pp. D559 - D563 |
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| Main Authors | , , , , , , , |
| Format | Journal Article |
| Language | English |
| Published |
England
Oxford University Press
08.01.2019
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| Subjects | |
| Online Access | Get full text |
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| Abstract | Abstract
CORUM is a database that provides a manually curated repository of experimentally characterized protein complexes from mammalian organisms, mainly human (67%), mouse (15%) and rat (10%). Given the vital functions of these macromolecular machines, their identification and functional characterization is foundational to our understanding of normal and disease biology. The new CORUM 3.0 release encompasses 4274 protein complexes offering the largest and most comprehensive publicly available dataset of mammalian protein complexes. The CORUM dataset is built from 4473 different genes, representing 22% of the protein coding genes in humans. Protein complexes are described by a protein complex name, subunit composition, cellular functions as well as the literature references. Information about stoichiometry of subunits depends on availability of experimental data. Recent developments include a graphical tool displaying known interactions between subunits. This allows the prediction of structural interconnections within protein complexes of unknown structure. In addition, we present a set of 58 protein complexes with alternatively spliced subunits. Those were found to affect cellular functions such as regulation of apoptotic activity, protein complex assembly or define cellular localization. CORUM is freely accessible at http://mips.helmholtz-muenchen.de/corum/. |
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| AbstractList | CORUM is a database that provides a manually curated repository of experimentally characterized protein complexes from mammalian organisms, mainly human (67%), mouse (15%) and rat (10%). Given the vital functions of these macromolecular machines, their identification and functional characterization is foundational to our understanding of normal and disease biology. The new CORUM 3.0 release encompasses 4274 protein complexes offering the largest and most comprehensive publicly available dataset of mammalian protein complexes. The CORUM dataset is built from 4473 different genes, representing 22% of the protein coding genes in humans. Protein complexes are described by a protein complex name, subunit composition, cellular functions as well as the literature references. Information about stoichiometry of subunits depends on availability of experimental data. Recent developments include a graphical tool displaying known interactions between subunits. This allows the prediction of structural interconnections within protein complexes of unknown structure. In addition, we present a set of 58 protein complexes with alternatively spliced subunits. Those were found to affect cellular functions such as regulation of apoptotic activity, protein complex assembly or define cellular localization. CORUM is freely accessible at
http://mips.helmholtz-muenchen.de/corum/
. CORUM is a database that provides a manually curated repository of experimentally characterized protein complexes from mammalian organisms, mainly human (67%), mouse (15%) and rat (10%). Given the vital functions of these macromolecular machines, their identification and functional characterization is foundational to our understanding of normal and disease biology. The new CORUM 3.0 release encompasses 4274 protein complexes offering the largest and most comprehensive publicly available dataset of mammalian protein complexes. The CORUM dataset is built from 4473 different genes, representing 22% of the protein coding genes in humans. Protein complexes are described by a protein complex name, subunit composition, cellular functions as well as the literature references. Information about stoichiometry of subunits depends on availability of experimental data. Recent developments include a graphical tool displaying known interactions between subunits. This allows the prediction of structural interconnections within protein complexes of unknown structure. In addition, we present a set of 58 protein complexes with alternatively spliced subunits. Those were found to affect cellular functions such as regulation of apoptotic activity, protein complex assembly or define cellular localization. CORUM is freely accessible at http://mips.helmholtz-muenchen.de/corum/. Abstract CORUM is a database that provides a manually curated repository of experimentally characterized protein complexes from mammalian organisms, mainly human (67%), mouse (15%) and rat (10%). Given the vital functions of these macromolecular machines, their identification and functional characterization is foundational to our understanding of normal and disease biology. The new CORUM 3.0 release encompasses 4274 protein complexes offering the largest and most comprehensive publicly available dataset of mammalian protein complexes. The CORUM dataset is built from 4473 different genes, representing 22% of the protein coding genes in humans. Protein complexes are described by a protein complex name, subunit composition, cellular functions as well as the literature references. Information about stoichiometry of subunits depends on availability of experimental data. Recent developments include a graphical tool displaying known interactions between subunits. This allows the prediction of structural interconnections within protein complexes of unknown structure. In addition, we present a set of 58 protein complexes with alternatively spliced subunits. Those were found to affect cellular functions such as regulation of apoptotic activity, protein complex assembly or define cellular localization. CORUM is freely accessible at http://mips.helmholtz-muenchen.de/corum/. |
| Author | Giurgiu, Madalina Fobo, Gisela Montrone, Corinna Brauner, Barbara Reinhard, Julian Dunger-Kaltenbach, Irmtraud Frishman, Goar Ruepp, Andreas |
| AuthorAffiliation | Institute for Bioinformatics and Systems Biology (IBIS), Helmholtz Zentrum München—German Research Center for Environmental Health (GmbH), Ingolstädter Landstraße 1, D-85764 Neuherberg, Germany |
| AuthorAffiliation_xml | – name: Institute for Bioinformatics and Systems Biology (IBIS), Helmholtz Zentrum München—German Research Center for Environmental Health (GmbH), Ingolstädter Landstraße 1, D-85764 Neuherberg, Germany |
| Author_xml | – sequence: 1 givenname: Madalina surname: Giurgiu fullname: Giurgiu, Madalina organization: Institute for Bioinformatics and Systems Biology (IBIS), Helmholtz Zentrum München—German Research Center for Environmental Health (GmbH), Ingolstädter Landstraße 1, D-85764 Neuherberg, Germany – sequence: 2 givenname: Julian surname: Reinhard fullname: Reinhard, Julian organization: Institute for Bioinformatics and Systems Biology (IBIS), Helmholtz Zentrum München—German Research Center for Environmental Health (GmbH), Ingolstädter Landstraße 1, D-85764 Neuherberg, Germany – sequence: 3 givenname: Barbara surname: Brauner fullname: Brauner, Barbara organization: Institute for Bioinformatics and Systems Biology (IBIS), Helmholtz Zentrum München—German Research Center for Environmental Health (GmbH), Ingolstädter Landstraße 1, D-85764 Neuherberg, Germany – sequence: 4 givenname: Irmtraud surname: Dunger-Kaltenbach fullname: Dunger-Kaltenbach, Irmtraud organization: Institute for Bioinformatics and Systems Biology (IBIS), Helmholtz Zentrum München—German Research Center for Environmental Health (GmbH), Ingolstädter Landstraße 1, D-85764 Neuherberg, Germany – sequence: 5 givenname: Gisela surname: Fobo fullname: Fobo, Gisela organization: Institute for Bioinformatics and Systems Biology (IBIS), Helmholtz Zentrum München—German Research Center for Environmental Health (GmbH), Ingolstädter Landstraße 1, D-85764 Neuherberg, Germany – sequence: 6 givenname: Goar surname: Frishman fullname: Frishman, Goar organization: Institute for Bioinformatics and Systems Biology (IBIS), Helmholtz Zentrum München—German Research Center for Environmental Health (GmbH), Ingolstädter Landstraße 1, D-85764 Neuherberg, Germany – sequence: 7 givenname: Corinna surname: Montrone fullname: Montrone, Corinna organization: Institute for Bioinformatics and Systems Biology (IBIS), Helmholtz Zentrum München—German Research Center for Environmental Health (GmbH), Ingolstädter Landstraße 1, D-85764 Neuherberg, Germany – sequence: 8 givenname: Andreas orcidid: 0000-0003-1705-3515 surname: Ruepp fullname: Ruepp, Andreas email: andreas.ruepp@helmholtz-muenchen.de organization: Institute for Bioinformatics and Systems Biology (IBIS), Helmholtz Zentrum München—German Research Center for Environmental Health (GmbH), Ingolstädter Landstraße 1, D-85764 Neuherberg, Germany |
| BackLink | https://www.ncbi.nlm.nih.gov/pubmed/30357367$$D View this record in MEDLINE/PubMed |
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CORUM is a database that provides a manually curated repository of experimentally characterized protein complexes from mammalian organisms, mainly... CORUM is a database that provides a manually curated repository of experimentally characterized protein complexes from mammalian organisms, mainly human (67%),... |
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| SubjectTerms | Alternative Splicing Animals Database Issue Databases, Protein Humans Mice Multiprotein Complexes - chemistry Multiprotein Complexes - genetics Multiprotein Complexes - metabolism Protein Conformation Protein Interaction Mapping Protein Isoforms - genetics Protein Isoforms - metabolism Protein Subunits - chemistry Protein Subunits - metabolism Rats |
| Title | CORUM: the comprehensive resource of mammalian protein complexes—2019 |
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