Single-cell analysis on stromal fibroblasts in the microenvironment of solid tumours

Besides malignant cells, the tumour microenvironment consists of various stromal cells such as cancer-associated fibroblasts (CAFs) and myofibroblasts. Accumulation of heterogeneous populations of stromal cells in solid tumours is associated with lower survival rates and cancer recurrence in patient...

Full description

Saved in:
Bibliographic Details
Published inAdvances in medical sciences Vol. 65; no. 1; pp. 163 - 169
Main Author Musa, Marahaini
Format Journal Article
LanguageEnglish
Published Netherlands Elsevier B.V 01.03.2020
Subjects
Online AccessGet full text

Cover

Loading…
Abstract Besides malignant cells, the tumour microenvironment consists of various stromal cells such as cancer-associated fibroblasts (CAFs) and myofibroblasts. Accumulation of heterogeneous populations of stromal cells in solid tumours is associated with lower survival rates and cancer recurrence in patients. Certain limitations presented by conventional experimental designs and techniques in cancer research have led to poor understanding of the fundamental basis of cancer niche. Recent developments in single-cell techniques allow more in-depth studies of the tumour microenvironment. Analyses at the single-cell level enables the detection of rare cell types, characterization of intra-tumour cellular heterogeneity and analysis of the lineage output of malignant cells. This subsequently, provides valuable insights on better diagnostic methods and treatment avenues for cancer. This review explores the recent advancements and applications of single-cell technologies in cancer research pertaining to the study of stromal fibroblasts in the microenvironment of solid tumours.
AbstractList Besides malignant cells, the tumour microenvironment consists of various stromal cells such as cancer-associated fibroblasts (CAFs) and myofibroblasts. Accumulation of heterogeneous populations of stromal cells in solid tumours is associated with lower survival rates and cancer recurrence in patients. Certain limitations presented by conventional experimental designs and techniques in cancer research have led to poor understanding of the fundamental basis of cancer niche. Recent developments in single-cell techniques allow more in-depth studies of the tumour microenvironment. Analyses at the single-cell level enables the detection of rare cell types, characterization of intra-tumour cellular heterogeneity and analysis of the lineage output of malignant cells. This subsequently, provides valuable insights on better diagnostic methods and treatment avenues for cancer. This review explores the recent advancements and applications of single-cell technologies in cancer research pertaining to the study of stromal fibroblasts in the microenvironment of solid tumours.
Author Musa, Marahaini
Author_xml – sequence: 1
  givenname: Marahaini
  surname: Musa
  fullname: Musa, Marahaini
  email: marahaini.musa@usm.my
  organization: Human Genome Centre, School of Medical Sciences, Universiti Sains Malaysia, Kubang Kerian, Kelantan, Malaysia
BackLink https://www.ncbi.nlm.nih.gov/pubmed/31972467$$D View this record in MEDLINE/PubMed
BookMark eNp9kEtr3TAQhUVIyfsXFIqW3dgdPSzbiy5CyAsCXSRdC9ket7rYUqqxL-TfRzc3ybKrGYZzZuZ8p-wwxICMfRVQChDmx6Z0w3amUoJoSyFLAHHATkTTNoUGkIdvvSmEkOaYnRJtAIw0AEfsWIm2ltrUJ-zp0Yc_ExY9ThN3wU0v5InHwGlJcXYTH32XYjc5Woj7wJe_yGffp4hh61MMM4aFx5FTnPzAl3WOa6Jz9mV0E-HFez1jv2-un67uiodft_dXlw9Fr6p2KdoK6nrQNYDSEiuBI_SNaHpZizxyXaVhlLKpzACmM91ohEJ0WmnT5oCtUmfs-37vc4r_VqTFzp52SVzAuJKVSuu8rNU6S9Veml8nSjja5-Rnl16sALvDaTf2Dafd4bRC2owzu769H1i7GYdPzwe_LPi5F2COufWYLPUeQ4-DT9gvdoj-vwdeAak2iHo
CitedBy_id crossref_primary_10_1038_s41698_023_00483_9
crossref_primary_10_1007_s12274_024_6492_x
crossref_primary_10_3390_cancers12051307
crossref_primary_10_3389_fimmu_2023_1199040
crossref_primary_10_3389_fgene_2023_1029758
crossref_primary_10_3389_fonc_2021_691185
crossref_primary_10_3389_fimmu_2022_1009789
crossref_primary_10_18632_aging_205205
crossref_primary_10_1016_j_addr_2021_114047
crossref_primary_10_1016_j_addr_2021_05_027
crossref_primary_10_1016_j_onano_2022_100042
crossref_primary_10_1007_s12033_023_00892_y
crossref_primary_10_1007_s10238_022_00886_1
crossref_primary_10_1080_07853890_2023_2250987
Cites_doi 10.1158/1078-0432.CCR-13-1637
10.1073/pnas.1320659110
10.1039/c2ib00166g
10.1164/rccm.2304004
10.1016/j.stem.2018.04.014
10.1038/nbt.2038
10.1038/s41467-018-04724-5
10.1073/pnas.1408993111
10.1016/j.addr.2015.07.007
10.1038/nature13600
10.1038/s41467-018-07582-3
10.1038/s41598-019-40809-x
10.18632/oncotarget.17893
10.1038/bjc.2013.748
10.1038/nbt.2282
10.1073/pnas.1420822111
10.1016/j.mam.2017.08.006
10.1387/ijdb.041802ad
10.1016/B978-0-12-411638-2.00002-1
10.1101/gr.191098.115
10.1038/nrm3758
10.1016/j.celrep.2018.12.015
10.1016/j.cell.2012.08.023
10.1186/s13058-016-0740-2
10.1083/jcb.130.2.393
10.1016/j.stem.2013.07.017
10.1182/blood-2016-07-728873
10.1111/pin.12389
10.1016/j.celrep.2018.10.047
10.1126/science.1254257
10.1073/pnas.0401064101
10.2741/3613
10.1038/nbt.3154
10.1038/ng.3646
10.1038/nm.4336
10.1080/19336918.2015.1008332
10.3892/or.2013.2568
10.1136/gut.2010.226092
10.1038/nrd.2015.16
10.3389/fonc.2015.00087
10.1126/science.1129139
10.1371/journal.pone.0096177
10.1126/science.aad0501
10.3892/ol.2012.1023
10.1186/s12885-017-3385-3
10.1038/nature12213
10.1126/scitranslmed.aad7369
10.1158/0008-5472.CAN-12-4140
10.1038/nmeth.1549
10.1038/nrg.2016.159
10.3389/fgene.2017.00073
10.3748/wjg.v20.i29.9872
10.1038/s41588-019-0424-9
10.4161/cbt.6.4.4255
10.3390/cancers7040902
10.1038/nbt.2594
10.1016/j.celrep.2018.03.010
10.1016/j.ygyno.2017.01.015
10.1126/science.aaf2403
10.1016/j.cell.2018.08.067
10.1038/nmeth.1557
10.1158/1078-0432.CCR-18-1955
10.1023/A:1023777013659
10.1186/s12943-017-0642-7
10.1038/nm.3394
10.1038/s41591-018-0096-5
10.1038/s41467-018-05220-6
10.1038/onc.2013.191
10.1126/science.1198704
10.1016/j.cell.2018.01.009
10.1158/1078-0432.CCR-06-2191
10.1074/jbc.274.51.36505
10.1126/science.1247651
10.1158/1541-7786.MCR-12-0307
10.12688/f1000research.8190.1
10.1038/ncb2709
10.1126/science.1076996
10.1016/j.ccell.2018.01.011
10.1084/jem.20162024
10.1186/s12885-015-1117-0
10.1002/cyto.a.22075
10.1038/ng.3818
10.1038/nm1764
ContentType Journal Article
Copyright 2019 Medical University of Bialystok
Copyright © 2019 Medical University of Bialystok. Published by Elsevier B.V. All rights reserved.
Copyright_xml – notice: 2019 Medical University of Bialystok
– notice: Copyright © 2019 Medical University of Bialystok. Published by Elsevier B.V. All rights reserved.
DBID CGR
CUY
CVF
ECM
EIF
NPM
AAYXX
CITATION
7X8
DOI 10.1016/j.advms.2019.12.001
DatabaseName Medline
MEDLINE
MEDLINE (Ovid)
MEDLINE
MEDLINE
PubMed
CrossRef
MEDLINE - Academic
DatabaseTitle MEDLINE
Medline Complete
MEDLINE with Full Text
PubMed
MEDLINE (Ovid)
CrossRef
MEDLINE - Academic
DatabaseTitleList
MEDLINE
Database_xml – sequence: 1
  dbid: NPM
  name: PubMed
  url: https://proxy.k.utb.cz/login?url=http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=PubMed
  sourceTypes: Index Database
– sequence: 2
  dbid: EIF
  name: MEDLINE
  url: https://proxy.k.utb.cz/login?url=https://www.webofscience.com/wos/medline/basic-search
  sourceTypes: Index Database
DeliveryMethod fulltext_linktorsrc
Discipline Medicine
EISSN 1898-4002
EndPage 169
ExternalDocumentID 10_1016_j_advms_2019_12_001
31972467
S1896112619300185
Genre Journal Article
Review
GroupedDBID ---
--M
.~1
0R~
1~.
23M
2WC
3V.
4.4
457
4G.
53G
5GY
7-5
7X7
88E
8AO
8FI
8FJ
8P~
9-L
AAAJQ
AACTN
AADPK
AAEDT
AAEDW
AAIAV
AAIKJ
AAKOC
AALRI
AAOAW
AATCM
AAXLA
AAXUO
ABDBF
ABJNI
ABLVK
ABMAC
ABMXE
ABMZM
ABUDA
ABUWG
ABXDB
ABYKQ
ACDAQ
ACGFS
ACRLP
ADBBV
ADEZE
ADUQZ
AEBSH
AEHWI
AEKER
AENEX
AFKRA
AFKWA
AFTJW
AFXIZ
AGGNV
AGHFR
AGUBO
AHMBA
AIEXJ
AIKHN
AITUG
AJBFU
AJOXV
ALMA_UNASSIGNED_HOLDINGS
AMFUW
AMRAJ
ANZVX
ASPBG
AVWKF
AXJTR
AZFZN
BAWUL
BENPR
BKOJK
BLXMC
BNPGV
BPHCQ
BVXVI
BYOGL
C1A
CCPQU
CJTIS
CS3
DIK
E0C
E3Z
EBS
EFJIC
EFLBG
EJD
EMOBN
ESX
F5P
FDB
FEDTE
FIRID
FYGXN
FYUFA
GBLVA
HMCUK
HVGLF
HZ~
KOM
M1P
M41
MET
MK0
M~E
O9-
OAUVE
OK1
P-8
P-9
P2P
P6G
PC.
PQQKQ
PROAC
PSQYO
RIG
RNS
ROL
SA.
SLJYH
SPCBC
SSH
SSI
SSN
SSP
SSU
SSZ
SV3
T5K
TR2
UKHRP
Y2W
~8M
~G-
~Z8
AAQFI
AAXKI
AFJKZ
AKRWK
ALIPV
CGR
CUY
CVF
ECM
EIF
NPM
AAYXX
CITATION
7X8
ID FETCH-LOGICAL-c359t-95077d4700342e51ef0c818c271003ab540f22856d06b6bf613eea43469400933
IEDL.DBID .~1
ISSN 1896-1126
IngestDate Sat Oct 05 05:17:50 EDT 2024
Thu Sep 26 18:03:57 EDT 2024
Sat Sep 28 08:25:50 EDT 2024
Fri Feb 23 02:47:46 EST 2024
IsPeerReviewed true
IsScholarly true
Issue 1
Keywords Stromal fibroblast
Microenvironment
Single-cell analysis
Solid tumour
Cancer
Language English
License Copyright © 2019 Medical University of Bialystok. Published by Elsevier B.V. All rights reserved.
LinkModel DirectLink
MergedId FETCHMERGED-LOGICAL-c359t-95077d4700342e51ef0c818c271003ab540f22856d06b6bf613eea43469400933
Notes ObjectType-Article-2
SourceType-Scholarly Journals-1
ObjectType-Feature-3
content type line 23
ObjectType-Review-1
PMID 31972467
PQID 2344271944
PQPubID 23479
PageCount 7
ParticipantIDs proquest_miscellaneous_2344271944
crossref_primary_10_1016_j_advms_2019_12_001
pubmed_primary_31972467
elsevier_sciencedirect_doi_10_1016_j_advms_2019_12_001
PublicationCentury 2000
PublicationDate March 2020
2020-Mar
2020-03-00
20200301
PublicationDateYYYYMMDD 2020-03-01
PublicationDate_xml – month: 03
  year: 2020
  text: March 2020
PublicationDecade 2020
PublicationPlace Netherlands
PublicationPlace_xml – name: Netherlands
PublicationTitle Advances in medical sciences
PublicationTitleAlternate Adv Med Sci
PublicationYear 2020
Publisher Elsevier B.V
Publisher_xml – name: Elsevier B.V
References Orimo, Weinberg (bib14) 2007; 6
Behbehani, Bendall, Clutter, Fantl, Nolan (bib42) 2012; 81A
Ishii, Ochiai, Neri (bib10) 2016; 99
Smith, Baker, Farren, Pommier, Swann, Wang (bib26) 2013; 19
Wang, Waters, Leung, Unruh, Roh, Shi (bib48) 2014; 512
Nagasaki, Hara, Nakanishi, Takahashi, Sato, Takeyama (bib24) 2014; 110
Strutz, Okada, Lo, Danoff, Carone, Tomaszewski (bib12) 1995; 130
Li, Courtois, Sengupta, Tan, Chen, Goh (bib72) 2017; 49
Warfvinge, Geironson, Sommarin, Lang, Karlsson, Roschupkina (bib88) 2017; 129
Kuperwasser, Chavarria, Wu, Magrane, Gray, Carey (bib28) 2004; 101
Nguyen, De Ninno, Mencattini, Mermet-Meillon, Fornabaio, Evans (bib83) 2018; 25
Desmoulière, Guyot, Gabbiani (bib32) 2004; 48
Yin, Li, Yan, Fang, Wang, Zhou (bib60) 2018
Xie, Wang, Deng, Huang, Taghavifar, Geng (bib55) 2018; 22
Cazet, Hui, Elsworth, Wu, Roden, Chan (bib62) 2018; 9
Lapin, Tjensvoll, Oltedal, Javle, Smaaland, Br (bib66) 2017; 17
Hong, Pan, Lee (bib80) 2012; 4
Kinchen, Chen, Parikh, Antanaviciute, Jagielowicz, Fawkner-Corbett (bib73) 2018 2018/12/01; 175
Bochaton-Piallat, Gabbiani, Hinz (bib31) 2016; 5
Tsujino, Seshimo, Yamamoto, Ngan, Ezumi, Takemasa (bib7) 2007; 13
Chen, Qu, Chen, Xu, Qi, Luo (bib20) 2014; 9
Patel, Tirosh, Trombetta, Shalek, Gillespie, Wakimoto (bib40) 2014; 344
Pan (bib46) 2014; 3
Bartoschek, Oskolkov, Bocci, Lövrot, Larsson, Sommarin (bib63) 2018; 9
Lambrechts, Wauters, Boeckx, Aibar, Nittner, Burton (bib57) 2018; 24
Ståhl, Salmén, Vickovic, Lundmark, Navarro, Magnusson (bib68) 2016; 353
Lamouille, Xu, Derynck (bib78) 2015; 15
Zhu, Qing, Zheng, Jin, Shi (bib89) 2017; 8
Busch, Andersson, Bom, Walsh, Ståhlberg, Landberg (bib58) 2017; 16
Woodworth, Girskis, Walsh (bib52) 2017; 18
Neesse, Michl, Frese, Feig, Cook, Jacobetz (bib25) 2011; 60
Hosein, Livingstone, Buchanan, Reid, Hallett, Basik (bib18) 2015; 15
Corces, Buenrostro, Wu, Greenside, Chan, Koenig (bib86) 2016; 48
Xing, Saidou, Watabe (bib15) 2010; 15
Heath, Ribas, Mischel (bib5) 2016; 15
Tirosh, Izar, Prakadan, Wadsworth, Treacy, Trombetta (bib6) 2016; 352
Shiga, Hara, Nagasaki, Sato, Takahashi, Takeyama (bib16) 2015; 7
Guo, Luc, Marco, Lin, Peng, Kerenyi (bib35) 2013; 13
Ramsköld, Luo, Wang, Li, Deng, Faridani (bib39) 2012; 30
Tirosh, Izar, Prakadan, Wadsworth, Treacy, Trombetta (bib50) 2016; 352
Marco, Karp, Guo, Robson, Hart, Trippa (bib44) 2014; 111
Kumar, Du, Lagoudas, Jiao, Sawyer, Drummond (bib81) 2018; 25
Gorchs, Hellevik, Bruun, Camilio, Al-Saad, Stuge (bib22) 2015; 5
Cima, Kong, Sengupta, Tan, Phyo, Lee (bib71) 2016; 8
Galon, Costes, Sanchez-Cabo, Kirilovsky, Mlecnik, Lagorce-Pagès (bib1) 2006; 313
Hu, Wang, Zhai, Yang, Shan, Chai (bib23) 2013; 5
Amir, Davis, Tadmor, Simonds, Levine, Bendall (bib43) 2013; 31
Samet (bib56) 2000; 161
Grosselin, Durand, Marsolier, Poitou, Marangoni, Nemati (bib90) 2019; 51
Saito, Sakaguchi, Maruyama, Iioka, Putranto, Sumardika (bib64) 2018; 9
Tang, Lao, Surani (bib3) 2011; 8
Quail, Joyce (bib9) 2013; 19
Kim, Chang (bib74) 2014; 20
Povinelli, Rodriguez-Meira, Mead (bib84) 2018; 59
Navin (bib51) 2015; 25
Massani, Fabris, Ruffolo, Morton, Strazzabosco (bib21) 2013; 30
Winterhoff, Maile, Mitra, Sebe, Bazzaro, Geller (bib79) 2017; 144
Bussard, Mutkus, Stumpf, Gomez-Manzano, Marini (bib8) 2016; 18
Comito, Giannoni, Segura, Barcellos-de-Souza, Raspollini, Baroni (bib19) 2014; 33
Bendall, Simonds, Qiu, Amir, Krutzik, Finck (bib41) 2011; 332
Chen, Lau, Andor, Grimes, Handy, Wood-Bouwens (bib82) 2017
Giustacchini, Thongjuea, Barkas, Woll, Povinelli, Booth (bib87) 2017; 23
Kojima, Ochiai (bib30) 2016; 66
Finak, Bertos, Pepin, Sadekova, Souleimanova, Zhao (bib2) 2008; 14
Kester, van Oudenaarden (bib53) 2018; 23
Heitzer, Auer, Gasch, Pichler, Ulz, Hoffmann (bib70) 2013; 73
Yoshida, Akatsuka, Imanaka-Yoshida (bib17) 2015; 9
Thorsen, Maerkl, Quake (bib34) 2002; 298
Dalerba, Kalisky, Sahoo, Rajendran, Rothenberg, Leyrat (bib69) 2011; 29
Buganim, Faddah, Cheng, Itskovich, Markoulaki, Ganz (bib36) 2012; 150
Moncada, Chiodin, Devlin, Baron, Hajdu, Simeone (bib67) 2018
Park, Lenter, Zimmermann, Garin-Chesa, Old, Rettig (bib13) 1999; 274
Moignard, Woodhouse, Haghverdi, Lilly, Tanaka, Wilkinson (bib45) 2015; 33
Jaitin, Kenigsberg, Keren-Shaul, Elefant, Paul, Zaretsky (bib38) 2014; 343
Gawad, Koh, Quake (bib49) 2014; 111
Ni, Zhuo, Su, Duan, Gao, Wang (bib47) 2013; 110
Tirosh, Suvà (bib91) 2019; 3
Su, Chen, Yao, Liu, Yu, Lao (bib61) 2018; 172
Berglund, Maaskola, Schultz, Friedrich, Marklund, Bergenstråhle (bib76) 2018; 9
Öhlund, Handly-Santana, Biffi, Elyada, Almeida, Ponz-Sarvise (bib11) 2017; 214
Moignard, Macaulay, Swiers, Buettner, Schütte, Calero-Nieto (bib37) 2013; 15
Müller, Diaz (bib54) 2017; 8
Persad, Dedhar (bib77) 2003; 22
Rubakhin, Romanova, Nemes, Sweedler (bib4) 2011; 8
Karagiannis, Poutahidis, Erdman, Kirsch, Riddell, Diamandis (bib27) 2012; 10
Costa, Kieffer, Scholer-Dahirel, Pelon, Bourachot, Cardon (bib59) 2018; 33
Chen, Lau, Andor, Grimes, Handy, Wood-Bouwens (bib75) 2019; 9
Nicholas, Reijo Pera (bib33) 2008; 2008
Bernard, Semaan, Huang, San Lucas, Mulu, Stephens (bib65) 2018; 25
Chatterjee, Behnam Azad, Nimmagadda (bib29) 2015; 124
Lawrence, Stojanov, Polak, Kryukov, Cibulskis, Sivachenko (bib85) 2013; 499
Lamouille (10.1016/j.advms.2019.12.001_bib78) 2015; 15
Grosselin (10.1016/j.advms.2019.12.001_bib90) 2019; 51
Gawad (10.1016/j.advms.2019.12.001_bib49) 2014; 111
Busch (10.1016/j.advms.2019.12.001_bib58) 2017; 16
Ramsköld (10.1016/j.advms.2019.12.001_bib39) 2012; 30
Galon (10.1016/j.advms.2019.12.001_bib1) 2006; 313
Dalerba (10.1016/j.advms.2019.12.001_bib69) 2011; 29
Öhlund (10.1016/j.advms.2019.12.001_bib11) 2017; 214
Nagasaki (10.1016/j.advms.2019.12.001_bib24) 2014; 110
Heitzer (10.1016/j.advms.2019.12.001_bib70) 2013; 73
Smith (10.1016/j.advms.2019.12.001_bib26) 2013; 19
Massani (10.1016/j.advms.2019.12.001_bib21) 2013; 30
Guo (10.1016/j.advms.2019.12.001_bib35) 2013; 13
Shiga (10.1016/j.advms.2019.12.001_bib16) 2015; 7
Comito (10.1016/j.advms.2019.12.001_bib19) 2014; 33
Chen (10.1016/j.advms.2019.12.001_bib82) 2017
Tirosh (10.1016/j.advms.2019.12.001_bib50) 2016; 352
Ståhl (10.1016/j.advms.2019.12.001_bib68) 2016; 353
Strutz (10.1016/j.advms.2019.12.001_bib12) 1995; 130
Saito (10.1016/j.advms.2019.12.001_bib64) 2018; 9
Cazet (10.1016/j.advms.2019.12.001_bib62) 2018; 9
Yoshida (10.1016/j.advms.2019.12.001_bib17) 2015; 9
Moignard (10.1016/j.advms.2019.12.001_bib45) 2015; 33
Woodworth (10.1016/j.advms.2019.12.001_bib52) 2017; 18
Tang (10.1016/j.advms.2019.12.001_bib3) 2011; 8
Povinelli (10.1016/j.advms.2019.12.001_bib84) 2018; 59
Xing (10.1016/j.advms.2019.12.001_bib15) 2010; 15
Kuperwasser (10.1016/j.advms.2019.12.001_bib28) 2004; 101
Hong (10.1016/j.advms.2019.12.001_bib80) 2012; 4
Li (10.1016/j.advms.2019.12.001_bib72) 2017; 49
Rubakhin (10.1016/j.advms.2019.12.001_bib4) 2011; 8
Wang (10.1016/j.advms.2019.12.001_bib48) 2014; 512
Kester (10.1016/j.advms.2019.12.001_bib53) 2018; 23
Warfvinge (10.1016/j.advms.2019.12.001_bib88) 2017; 129
Lapin (10.1016/j.advms.2019.12.001_bib66) 2017; 17
Berglund (10.1016/j.advms.2019.12.001_bib76) 2018; 9
Kim (10.1016/j.advms.2019.12.001_bib74) 2014; 20
Amir (10.1016/j.advms.2019.12.001_bib43) 2013; 31
Bussard (10.1016/j.advms.2019.12.001_bib8) 2016; 18
Bartoschek (10.1016/j.advms.2019.12.001_bib63) 2018; 9
Corces (10.1016/j.advms.2019.12.001_bib86) 2016; 48
Finak (10.1016/j.advms.2019.12.001_bib2) 2008; 14
Gorchs (10.1016/j.advms.2019.12.001_bib22) 2015; 5
Bernard (10.1016/j.advms.2019.12.001_bib65) 2018; 25
Giustacchini (10.1016/j.advms.2019.12.001_bib87) 2017; 23
Desmoulière (10.1016/j.advms.2019.12.001_bib32) 2004; 48
Samet (10.1016/j.advms.2019.12.001_bib56) 2000; 161
Park (10.1016/j.advms.2019.12.001_bib13) 1999; 274
Buganim (10.1016/j.advms.2019.12.001_bib36) 2012; 150
Moignard (10.1016/j.advms.2019.12.001_bib37) 2013; 15
Pan (10.1016/j.advms.2019.12.001_bib46) 2014; 3
Neesse (10.1016/j.advms.2019.12.001_bib25) 2011; 60
Marco (10.1016/j.advms.2019.12.001_bib44) 2014; 111
Heath (10.1016/j.advms.2019.12.001_bib5) 2016; 15
Thorsen (10.1016/j.advms.2019.12.001_bib34) 2002; 298
Hosein (10.1016/j.advms.2019.12.001_bib18) 2015; 15
Karagiannis (10.1016/j.advms.2019.12.001_bib27) 2012; 10
Navin (10.1016/j.advms.2019.12.001_bib51) 2015; 25
Kinchen (10.1016/j.advms.2019.12.001_bib73) 2018; 175
Kumar (10.1016/j.advms.2019.12.001_bib81) 2018; 25
Patel (10.1016/j.advms.2019.12.001_bib40) 2014; 344
Ishii (10.1016/j.advms.2019.12.001_bib10) 2016; 99
Zhu (10.1016/j.advms.2019.12.001_bib89) 2017; 8
Ni (10.1016/j.advms.2019.12.001_bib47) 2013; 110
Hu (10.1016/j.advms.2019.12.001_bib23) 2013; 5
Jaitin (10.1016/j.advms.2019.12.001_bib38) 2014; 343
Costa (10.1016/j.advms.2019.12.001_bib59) 2018; 33
Persad (10.1016/j.advms.2019.12.001_bib77) 2003; 22
Orimo (10.1016/j.advms.2019.12.001_bib14) 2007; 6
Nguyen (10.1016/j.advms.2019.12.001_bib83) 2018; 25
Tsujino (10.1016/j.advms.2019.12.001_bib7) 2007; 13
Tirosh (10.1016/j.advms.2019.12.001_bib6) 2016; 352
Chen (10.1016/j.advms.2019.12.001_bib20) 2014; 9
Su (10.1016/j.advms.2019.12.001_bib61) 2018; 172
Cima (10.1016/j.advms.2019.12.001_bib71) 2016; 8
Kojima (10.1016/j.advms.2019.12.001_bib30) 2016; 66
Tirosh (10.1016/j.advms.2019.12.001_bib91) 2019; 3
Quail (10.1016/j.advms.2019.12.001_bib9) 2013; 19
Müller (10.1016/j.advms.2019.12.001_bib54) 2017; 8
Nicholas (10.1016/j.advms.2019.12.001_bib33) 2008; 2008
Yin (10.1016/j.advms.2019.12.001_bib60) 2018
Behbehani (10.1016/j.advms.2019.12.001_bib42) 2012; 81A
Lawrence (10.1016/j.advms.2019.12.001_bib85) 2013; 499
Winterhoff (10.1016/j.advms.2019.12.001_bib79) 2017; 144
Bendall (10.1016/j.advms.2019.12.001_bib41) 2011; 332
Chen (10.1016/j.advms.2019.12.001_bib75) 2019; 9
Chatterjee (10.1016/j.advms.2019.12.001_bib29) 2015; 124
Bochaton-Piallat (10.1016/j.advms.2019.12.001_bib31) 2016; 5
Xie (10.1016/j.advms.2019.12.001_bib55) 2018; 22
Lambrechts (10.1016/j.advms.2019.12.001_bib57) 2018; 24
Moncada (10.1016/j.advms.2019.12.001_bib67) 2018
References_xml – volume: 144
  start-page: 598
  year: 2017
  end-page: 606
  ident: bib79
  article-title: Single cell sequencing reveals heterogeneity within ovarian cancer epithelium and cancer associated stromal cells
  publication-title: Gynecol Oncol
  contributor:
    fullname: Geller
– volume: 99
  start-page: 186
  year: 2016
  end-page: 196
  ident: bib10
  article-title: Phenotypic and functional heterogeneity of cancer-associated fibroblast within the tumor microenvironment
  publication-title: Adv Drug Deliv Rev
  contributor:
    fullname: Neri
– volume: 9
  year: 2014
  ident: bib20
  article-title: Chinese herbal medicine suppresses invasion-promoting capacity of cancer-associated fibroblasts in pancreatic cancer
  publication-title: PLoS One
  contributor:
    fullname: Luo
– volume: 30
  start-page: 1143
  year: 2013
  end-page: 1148
  ident: bib21
  article-title: Isolation and characterization of biliary epithelial and stromal cells from resected human cholangiocarcinoma: a novel in vitro model to study tumor-stroma interactions
  publication-title: Oncol Rep
  contributor:
    fullname: Strazzabosco
– volume: 5
  start-page: 87
  year: 2015
  ident: bib22
  article-title: Cancer-associated fibroblasts from lung tumors maintain their immunosuppressive abilities after high-dose irradiation
  publication-title: Front Oncol
  contributor:
    fullname: Stuge
– volume: 33
  start-page: 2423
  year: 2014
  end-page: 2431
  ident: bib19
  article-title: Cancer-associated fibroblasts and M2-polarized macrophages synergize during prostate carcinoma progression
  publication-title: Oncogene
  contributor:
    fullname: Baroni
– volume: 59
  start-page: 85
  year: 2018
  end-page: 94
  ident: bib84
  article-title: Single cell analysis of normal and leukemic hematopoiesis
  publication-title: Mol Asp Med
  contributor:
    fullname: Mead
– volume: 499
  start-page: 214
  year: 2013
  end-page: 218
  ident: bib85
  article-title: Mutational heterogeneity in cancer and the search for new cancer-associated genes
  publication-title: Nature
  contributor:
    fullname: Sivachenko
– volume: 9
  start-page: 96
  year: 2015
  end-page: 104
  ident: bib17
  article-title: Tenascin-C and integrins in cancer
  publication-title: Cell Adhes Migrat
  contributor:
    fullname: Imanaka-Yoshida
– volume: 60
  start-page: 861
  year: 2011
  end-page: 868
  ident: bib25
  article-title: Stromal biology and therapy in pancreatic cancer
  publication-title: Gut
  contributor:
    fullname: Jacobetz
– volume: 31
  start-page: 545
  year: 2013
  end-page: 552
  ident: bib43
  article-title: viSNE enables visualization of high dimensional single-cell data and reveals phenotypic heterogeneity of leukemia
  publication-title: Nat Biotechnol
  contributor:
    fullname: Bendall
– volume: 101
  start-page: 4966
  year: 2004
  end-page: 4971
  ident: bib28
  article-title: Reconstruction of functionally normal and malignant human breast tissues in mice
  publication-title: Proc Natl Acad Sci U S A
  contributor:
    fullname: Carey
– volume: 129
  start-page: 2384
  year: 2017
  end-page: 2394
  ident: bib88
  article-title: Single-cell molecular analysis defines therapy response and immunophenotype of stem cell subpopulations in CML
  publication-title: Blood
  contributor:
    fullname: Roschupkina
– volume: 3
  start-page: 106
  year: 2014
  ident: bib46
  article-title: Single cell analysis: from technology to biology and medicine
  publication-title: Single Cell Biol
  contributor:
    fullname: Pan
– volume: 15
  start-page: 178
  year: 2015
  end-page: 196
  ident: bib78
  article-title: Molecular mechanisms of epithelial-mesenchymal transition
  publication-title: Nat Rev Mol Cell Biol
  contributor:
    fullname: Derynck
– volume: 7
  start-page: 2443
  year: 2015
  end-page: 2458
  ident: bib16
  article-title: Cancer-associated fibroblasts: their characteristics and their roles in tumor growth
  publication-title: Cancers
  contributor:
    fullname: Takeyama
– volume: 298
  start-page: 580
  year: 2002
  end-page: 584
  ident: bib34
  article-title: Microfluidic large-scale integration
  publication-title: Science
  contributor:
    fullname: Quake
– volume: 16
  start-page: 73
  year: 2017
  ident: bib58
  article-title: Cellular organization and molecular differentiation model of breast cancer-associated fibroblasts
  publication-title: Mol Cancer
  contributor:
    fullname: Landberg
– volume: 23
  start-page: 692
  year: 2017
  ident: bib87
  article-title: Single-cell transcriptomics uncovers distinct molecular signatures of stem cells in chronic myeloid leukemia
  publication-title: Nat Med
  contributor:
    fullname: Booth
– volume: 353
  start-page: 78
  year: 2016
  end-page: 82
  ident: bib68
  article-title: Visualization and analysis of gene expression in tissue sections by spatial transcriptomics
  publication-title: Science
  contributor:
    fullname: Magnusson
– volume: 352
  start-page: 189
  year: 2016
  end-page: 196
  ident: bib6
  article-title: Dissecting the multicellular ecosystem of metastatic melanoma by single-cell RNA-seq
  publication-title: Science
  contributor:
    fullname: Trombetta
– volume: 18
  start-page: 230
  year: 2017
  end-page: 244
  ident: bib52
  article-title: Building a lineage from single cells: genetic techniques for cell lineage tracking
  publication-title: Nat Rev Genet
  contributor:
    fullname: Walsh
– volume: 24
  start-page: 1277
  year: 2018
  end-page: 1289
  ident: bib57
  article-title: Phenotype molding of stromal cells in the lung tumor microenvironment
  publication-title: Nat Med
  contributor:
    fullname: Burton
– volume: 23
  start-page: 166
  year: 2018
  end-page: 179
  ident: bib53
  article-title: Single-cell transcriptomics meets lineage tracing
  publication-title: Cell Stem Cell
  contributor:
    fullname: van Oudenaarden
– year: 2018
  ident: bib67
  article-title: Building a tumor atlas: integrating single-cell RNA-Seq data with spatial transcriptomics in pancreatic ductal adenocarcinoma
  contributor:
    fullname: Simeone
– volume: 15
  start-page: 130
  year: 2015
  ident: bib18
  article-title: A functional in vitro model of heterotypic interactions reveals a role for interferon-positive carcinoma associated fibroblasts in breast cancer
  publication-title: BMC Canc
  contributor:
    fullname: Basik
– volume: 5
  start-page: 609
  year: 2013
  end-page: 612
  ident: bib23
  article-title: Effects of cancer-associated fibroblasts on the migration and invasion abilities of SGC-7901 gastric cancer cells
  publication-title: Oncol Lett
  contributor:
    fullname: Chai
– volume: 19
  start-page: 1423
  year: 2013
  end-page: 1437
  ident: bib9
  article-title: Microenvironmental regulation of tumor progression and metastasis
  publication-title: Nat Med
  contributor:
    fullname: Joyce
– volume: 274
  start-page: 36505
  year: 1999
  end-page: 36512
  ident: bib13
  article-title: Fibroblast activation protein, a dual specificity serine protease expressed in reactive human tumor stromal fibroblasts
  publication-title: J Biol Chem
  contributor:
    fullname: Rettig
– volume: 8
  start-page: S6
  year: 2011
  end-page: S11
  ident: bib3
  article-title: Development and applications of single-cell transcriptome analysis
  publication-title: Nat Methods
  contributor:
    fullname: Surani
– volume: 6
  start-page: 618
  year: 2007
  end-page: 619
  ident: bib14
  article-title: Heterogeneity of stromal fibroblasts in tumor
  publication-title: Cancer Biol Ther
  contributor:
    fullname: Weinberg
– volume: 110
  start-page: 469
  year: 2014
  end-page: 478
  ident: bib24
  article-title: Interleukin-6 released by colon cancer-associated fibroblasts is critical for tumour angiogenesis: anti-interleukin-6 receptor antibody suppressed angiogenesis and inhibited tumour-stroma interaction
  publication-title: Br J Canc
  contributor:
    fullname: Takeyama
– volume: 8
  year: 2016
  ident: bib71
  article-title: Tumor-derived circulating endothelial cell clusters in colorectal cancer
  publication-title: Sci Transl Med
  contributor:
    fullname: Lee
– volume: 20
  start-page: 9872
  year: 2014
  end-page: 9881
  ident: bib74
  article-title: Colorectal cancer in inflammatory bowel disease: the risk, pathogenesis, prevention and diagnosis
  publication-title: World J Gastroenterol
  contributor:
    fullname: Chang
– volume: 214
  start-page: 579
  year: 2017
  end-page: 596
  ident: bib11
  article-title: Distinct populations of inflammatory fibroblasts and myofibroblasts in pancreatic cancer
  publication-title: J Exp Med
  contributor:
    fullname: Ponz-Sarvise
– volume: 49
  start-page: 708
  year: 2017
  end-page: 718
  ident: bib72
  article-title: Reference component analysis of single-cell transcriptomes elucidates cellular heterogeneity in human colorectal tumors
  publication-title: Nat Genet
  contributor:
    fullname: Goh
– volume: 111
  start-page: E5643
  year: 2014
  end-page: E5650
  ident: bib44
  article-title: Bifurcation analysis of single-cell gene expression data reveals epigenetic landscape
  publication-title: Proc Natl Acad Sci U S A
  contributor:
    fullname: Trippa
– volume: 124
  start-page: 31
  year: 2015
  end-page: 82
  ident: bib29
  article-title: The intricate role of CXCR4 in cancer
  publication-title: Adv Cancer Res
  contributor:
    fullname: Nimmagadda
– volume: 9
  start-page: 4536
  year: 2019
  ident: bib75
  article-title: Single-cell transcriptome analysis identifies distinct cell types and intercellular niche signalling in a primary gastric organoid model
  publication-title: Sci Rep
  contributor:
    fullname: Wood-Bouwens
– volume: 8
  start-page: S20
  year: 2011
  end-page: S29
  ident: bib4
  article-title: Profiling metabolites and peptides in single cells
  publication-title: Nat Methods
  contributor:
    fullname: Sweedler
– volume: 8
  start-page: 53763
  year: 2017
  end-page: 53779
  ident: bib89
  article-title: Advances in single-cell RNA sequencing and its applications in cancer research
  publication-title: Oncotarget
  contributor:
    fullname: Shi
– volume: 8
  start-page: 73
  year: 2017
  ident: bib54
  article-title: Single-cell mRNA sequencing in cancer research: integrating the genomic fingerprint
  publication-title: Front Genet
  contributor:
    fullname: Diaz
– volume: 9
  start-page: 2916
  year: 2018
  end-page: 2929
  ident: bib64
  article-title: Stromal mesenchymal stem cells facilitate pancreatic cancer progression by regulating specific secretory molecules through mutual cellular interaction
  publication-title: J Cancer
  contributor:
    fullname: Sumardika
– volume: 5
  start-page: F1000
  year: 2016
  ident: bib31
  article-title: The myofibroblast in wound healing and fibrosis: answered and unanswered questions
  publication-title: F1000Research
  contributor:
    fullname: Hinz
– volume: 48
  start-page: 1193
  year: 2016
  ident: bib86
  article-title: Lineage-specific and single-cell chromatin accessibility charts human hematopoiesis and leukemia evolution
  publication-title: Nat Genet
  contributor:
    fullname: Koenig
– volume: 110
  start-page: 21083
  year: 2013
  end-page: 21088
  ident: bib47
  article-title: Reproducible copy number variation patterns among single circulating tumor cells of lung cancer patients
  publication-title: Proc Natl Acad Sci U S A
  contributor:
    fullname: Wang
– volume: 13
  start-page: 492
  year: 2013
  end-page: 505
  ident: bib35
  article-title: Mapping cellular hierarchy by single-cell analysis of the cell surface repertoire
  publication-title: Cell Stem Cell
  contributor:
    fullname: Kerenyi
– volume: 81A
  start-page: 552
  year: 2012
  end-page: 566
  ident: bib42
  article-title: Single-cell mass cytometry adapted to measurements of the cell cycle
  publication-title: Cytometry Part A
  contributor:
    fullname: Nolan
– start-page: 368605
  year: 2018
  ident: bib60
  article-title: Comprehensive analysis of immune evasion in breast cancer by single-cell RNA-seq
  contributor:
    fullname: Zhou
– volume: 130
  start-page: 393
  year: 1995
  end-page: 405
  ident: bib12
  article-title: Identification and characterization of a fibroblast marker: FSP1
  publication-title: J Cell Biol
  contributor:
    fullname: Tomaszewski
– volume: 161
  start-page: 1
  year: 2000
  end-page: 2
  ident: bib56
  article-title: Does idiopathic pulmonary fibrosis increase lung cancer risk?
  publication-title: Am J Respir Crit Care Med
  contributor:
    fullname: Samet
– volume: 22
  start-page: 375
  year: 2003
  end-page: 384
  ident: bib77
  article-title: The role of integrin-linked kinase (ILK) in cancer progression
  publication-title: Cancer Metastasis Rev
  contributor:
    fullname: Dedhar
– volume: 19
  start-page: 6943
  year: 2013
  end-page: 6956
  ident: bib26
  article-title: Tumor stromal architecture can define the intrinsic tumor response to VEGF-targeted therapy
  publication-title: Clin Cancer Res
  contributor:
    fullname: Wang
– volume: 150
  start-page: 1209
  year: 2012
  end-page: 1222
  ident: bib36
  article-title: Single-cell expression analyses during cellular reprogramming reveal an early stochastic and a late hierarchic phase
  publication-title: Cell
  contributor:
    fullname: Ganz
– volume: 15
  start-page: 166
  year: 2010
  end-page: 179
  ident: bib15
  article-title: Cancer associated fibroblasts (CAFs) in tumor microenvironment
  publication-title: Front Biosci (Landmark Ed).
  contributor:
    fullname: Watabe
– volume: 512
  start-page: 155
  year: 2014
  ident: bib48
  article-title: Clonal evolution in breast cancer revealed by single nucleus genome sequencing
  publication-title: Nature
  contributor:
    fullname: Shi
– volume: 9
  start-page: 2419
  year: 2018
  ident: bib76
  article-title: Spatial maps of prostate cancer transcriptomes reveal an unexplored landscape of heterogeneity
  publication-title: Nat Commun
  contributor:
    fullname: Bergenstråhle
– volume: 22
  start-page: 3625
  year: 2018
  end-page: 3640
  ident: bib55
  article-title: Single-cell deconvolution of fibroblast heterogeneity in mouse pulmonary fibrosis
  publication-title: Cell Rep
  contributor:
    fullname: Geng
– volume: 175
  start-page: 372
  year: 2018 2018/12/01
  end-page: 386
  ident: bib73
  article-title: Structural remodeling of the human colonic mesenchyme in inflammatory bowel disease
  publication-title: Cell
  contributor:
    fullname: Fawkner-Corbett
– volume: 66
  start-page: 123
  year: 2016
  end-page: 131
  ident: bib30
  article-title: Special cancer microenvironment in human colonic cancer: concept of cancer microenvironment formed by peritoneal invasion (CMPI) and implication of subperitoneal fibroblast in cancer progression
  publication-title: Pathol Int
  contributor:
    fullname: Ochiai
– volume: 30
  start-page: 777
  year: 2012
  end-page: 782
  ident: bib39
  article-title: Full-length mRNA-Seq from single-cell levels of RNA and individual circulating tumor cells
  publication-title: Nat Biotechnol
  contributor:
    fullname: Faridani
– volume: 344
  start-page: 1396
  year: 2014
  end-page: 1401
  ident: bib40
  article-title: Single-cell RNA-seq highlights intratumoral heterogeneity in primary glioblastoma
  publication-title: Science
  contributor:
    fullname: Wakimoto
– volume: 15
  start-page: 204
  year: 2016
  end-page: 216
  ident: bib5
  article-title: Single-cell analysis tools for drug discovery and development
  publication-title: Nat Rev Drug Discov
  contributor:
    fullname: Mischel
– volume: 33
  start-page: 463
  year: 2018
  end-page: 479
  ident: bib59
  article-title: Fibroblast heterogeneity and immunosuppressive environment in human breast cancer
  publication-title: Cancer Cell
  contributor:
    fullname: Cardon
– volume: 10
  start-page: 1403
  year: 2012
  end-page: 1418
  ident: bib27
  article-title: Cancer-associated fibroblasts drive the progression of metastasis through both paracrine and mechanical pressure on cancer tissue
  publication-title: Mol Canc. Res
  contributor:
    fullname: Diamandis
– volume: 3
  start-page: 151
  year: 2019
  end-page: 166
  ident: bib91
  article-title: Deciphering human tumor biology by single-cell expression profiling
  publication-title: Annu Rev Cell Biol
  contributor:
    fullname: Suvà
– volume: 25
  start-page: 1499
  year: 2015
  end-page: 1507
  ident: bib51
  article-title: The first five years of single-cell cancer genomics and beyond
  publication-title: Genome Res
  contributor:
    fullname: Navin
– volume: 25
  start-page: 3884
  year: 2018
  end-page: 3893
  ident: bib83
  article-title: Dissecting effects of anti-cancer drugs and cancer-associated fibroblasts by on-chip reconstitution of immunocompetent tumor microenvironments
  publication-title: Cell Rep
  contributor:
    fullname: Evans
– volume: 13
  start-page: 2082
  year: 2007
  end-page: 2090
  ident: bib7
  article-title: Stromal myofibroblasts predict disease recurrence for colorectal cancer
  publication-title: Clin Cancer Res
  contributor:
    fullname: Takemasa
– volume: 18
  start-page: 84
  year: 2016
  ident: bib8
  article-title: Tumor-associated stromal cells as key contributors to the tumor microenvironment
  publication-title: Breast Cancer Res
  contributor:
    fullname: Marini
– volume: 25
  start-page: 1458
  year: 2018
  end-page: 1468
  ident: bib81
  article-title: Analysis of single-cell RNA-seq identifies cell-cell communication associated with tumor characteristics
  publication-title: Cell Rep
  contributor:
    fullname: Drummond
– volume: 332
  start-page: 687
  year: 2011
  end-page: 696
  ident: bib41
  article-title: Single-cell mass cytometry of differential immune and drug responses across a human hematopoietic continuum
  publication-title: Science
  contributor:
    fullname: Finck
– volume: 73
  start-page: 2965
  year: 2013
  end-page: 2975
  ident: bib70
  article-title: Complex tumor genomes inferred from single circulating tumor cells by array-CGH and next-generation sequencing
  publication-title: Cancer Res
  contributor:
    fullname: Hoffmann
– volume: 4
  start-page: 374
  year: 2012
  end-page: 380
  ident: bib80
  article-title: Single-cell level co-culture platform for intercellular communication
  publication-title: Integr Biol
  contributor:
    fullname: Lee
– volume: 33
  start-page: 269
  year: 2015
  end-page: 276
  ident: bib45
  article-title: Decoding the regulatory network of early blood development from single-cell gene expression measurements
  publication-title: Nat Biotechnol
  contributor:
    fullname: Wilkinson
– volume: 313
  start-page: 1960
  year: 2006
  end-page: 1964
  ident: bib1
  article-title: Type, density, and location of immune cells within human colorectal tumors predict clinical outcome
  publication-title: Science
  contributor:
    fullname: Lagorce-Pagès
– volume: 111
  start-page: 17947
  year: 2014
  end-page: 17952
  ident: bib49
  article-title: Dissecting the clonal origins of childhood acute lymphoblastic leukemia by single-cell genomics
  publication-title: Proc Natl Acad Sci U S A
  contributor:
    fullname: Quake
– volume: 9
  start-page: 2897
  year: 2018
  ident: bib62
  article-title: Targeting stromal remodeling and cancer stem cell plasticity overcomes chemoresistance in triple negative breast cancer
  publication-title: Nat Commun
  contributor:
    fullname: Chan
– volume: 9
  start-page: 5150
  year: 2018
  ident: bib63
  article-title: Spatially and functionally distinct subcles of breast cancer-associated fibroblasts revealed by single cell RNA sequencing
  publication-title: Nat Commun
  contributor:
    fullname: Sommarin
– volume: 343
  start-page: 776
  year: 2014
  end-page: 779
  ident: bib38
  article-title: Massively parallel single-cell RNA-seq for marker-free decomposition of tissues into cell types
  publication-title: Science
  contributor:
    fullname: Zaretsky
– volume: 2008
  year: 2008
  ident: bib33
  article-title: Method for single-cell sorting and expansion of genetically modified human embryonic stem cells
  publication-title: CSH Protoc
  contributor:
    fullname: Reijo Pera
– volume: 172
  start-page: 841
  year: 2018
  end-page: 856
  ident: bib61
  article-title: CD10+GPR77+ cancer-associated fibroblasts promote cancer formation and chemoresistance by sustaining cancer stemness
  publication-title: Cell
  contributor:
    fullname: Lao
– volume: 17
  start-page: 390
  year: 2017
  ident: bib66
  article-title: Single-cell mRNA profiling reveals transcriptional heterogeneity among pancreatic circulating tumour cells
  publication-title: BMC Canc
  contributor:
    fullname: Br
– year: 2017
  ident: bib82
  article-title: Single-cell transcriptome analysis identifies distinct cell types and intercellular niche signalling in a primary gastric organoid model
  contributor:
    fullname: Wood-Bouwens
– volume: 15
  start-page: 363
  year: 2013
  end-page: 372
  ident: bib37
  article-title: Characterization of transcriptional networks in blood stem and progenitor cells using high-throughput single-cell gene expression analysis
  publication-title: Nat Cell Biol
  contributor:
    fullname: Calero-Nieto
– volume: 48
  start-page: 509
  year: 2004
  end-page: 517
  ident: bib32
  article-title: The stroma reaction myofibroblast: a key player in the control of tumor cell behavior
  publication-title: Int J Dev Biol
  contributor:
    fullname: Gabbiani
– volume: 352
  start-page: 189
  year: 2016
  end-page: 196
  ident: bib50
  article-title: Dissecting the multicellular ecosystem of metastatic melanoma by single-cell RNA-seq
  publication-title: Science
  contributor:
    fullname: Trombetta
– volume: 51
  start-page: 1060
  year: 2019
  end-page: 1066
  ident: bib90
  article-title: High-throughput single-cell ChIP-seq identifies heterogeneity of chromatin states in breast cancer
  publication-title: Nat Genet
  contributor:
    fullname: Nemati
– volume: 29
  start-page: 1120
  year: 2011
  end-page: 1127
  ident: bib69
  article-title: Single-cell dissection of transcriptional heterogeneity in human colon tumors
  publication-title: Nat Biotechnol
  contributor:
    fullname: Leyrat
– volume: 25
  start-page: 2194
  year: 2018
  end-page: 2205
  ident: bib65
  article-title: Single cell transcriptomics of pancreatic cancer precursors demonstrates epithelial and microenvironmental heterogeneity as an early event in neoplastic progression
  publication-title: Clin Cancer Res
  contributor:
    fullname: Stephens
– volume: 14
  start-page: 518
  year: 2008
  end-page: 527
  ident: bib2
  article-title: Stromal gene expression predicts clinical outcome in breast cancer
  publication-title: Nat Med
  contributor:
    fullname: Zhao
– volume: 19
  start-page: 6943
  issue: 24
  year: 2013
  ident: 10.1016/j.advms.2019.12.001_bib26
  article-title: Tumor stromal architecture can define the intrinsic tumor response to VEGF-targeted therapy
  publication-title: Clin Cancer Res
  doi: 10.1158/1078-0432.CCR-13-1637
  contributor:
    fullname: Smith
– volume: 110
  start-page: 21083
  issue: 52
  year: 2013
  ident: 10.1016/j.advms.2019.12.001_bib47
  article-title: Reproducible copy number variation patterns among single circulating tumor cells of lung cancer patients
  publication-title: Proc Natl Acad Sci U S A
  doi: 10.1073/pnas.1320659110
  contributor:
    fullname: Ni
– volume: 4
  start-page: 374
  issue: 4
  year: 2012
  ident: 10.1016/j.advms.2019.12.001_bib80
  article-title: Single-cell level co-culture platform for intercellular communication
  publication-title: Integr Biol
  doi: 10.1039/c2ib00166g
  contributor:
    fullname: Hong
– volume: 161
  start-page: 1
  issue: 1
  year: 2000
  ident: 10.1016/j.advms.2019.12.001_bib56
  article-title: Does idiopathic pulmonary fibrosis increase lung cancer risk?
  publication-title: Am J Respir Crit Care Med
  doi: 10.1164/rccm.2304004
  contributor:
    fullname: Samet
– volume: 23
  start-page: 166
  issue: 2
  year: 2018
  ident: 10.1016/j.advms.2019.12.001_bib53
  article-title: Single-cell transcriptomics meets lineage tracing
  publication-title: Cell Stem Cell
  doi: 10.1016/j.stem.2018.04.014
  contributor:
    fullname: Kester
– volume: 9
  start-page: 2916
  issue: 16
  year: 2018
  ident: 10.1016/j.advms.2019.12.001_bib64
  article-title: Stromal mesenchymal stem cells facilitate pancreatic cancer progression by regulating specific secretory molecules through mutual cellular interaction
  publication-title: J Cancer
  contributor:
    fullname: Saito
– volume: 29
  start-page: 1120
  issue: 12
  year: 2011
  ident: 10.1016/j.advms.2019.12.001_bib69
  article-title: Single-cell dissection of transcriptional heterogeneity in human colon tumors
  publication-title: Nat Biotechnol
  doi: 10.1038/nbt.2038
  contributor:
    fullname: Dalerba
– volume: 9
  start-page: 2419
  issue: 1
  year: 2018
  ident: 10.1016/j.advms.2019.12.001_bib76
  article-title: Spatial maps of prostate cancer transcriptomes reveal an unexplored landscape of heterogeneity
  publication-title: Nat Commun
  doi: 10.1038/s41467-018-04724-5
  contributor:
    fullname: Berglund
– volume: 111
  start-page: E5643
  issue: 52
  year: 2014
  ident: 10.1016/j.advms.2019.12.001_bib44
  article-title: Bifurcation analysis of single-cell gene expression data reveals epigenetic landscape
  publication-title: Proc Natl Acad Sci U S A
  doi: 10.1073/pnas.1408993111
  contributor:
    fullname: Marco
– volume: 99
  start-page: 186
  issue: Pt B
  year: 2016
  ident: 10.1016/j.advms.2019.12.001_bib10
  article-title: Phenotypic and functional heterogeneity of cancer-associated fibroblast within the tumor microenvironment
  publication-title: Adv Drug Deliv Rev
  doi: 10.1016/j.addr.2015.07.007
  contributor:
    fullname: Ishii
– volume: 512
  start-page: 155
  issue: 7513
  year: 2014
  ident: 10.1016/j.advms.2019.12.001_bib48
  article-title: Clonal evolution in breast cancer revealed by single nucleus genome sequencing
  publication-title: Nature
  doi: 10.1038/nature13600
  contributor:
    fullname: Wang
– volume: 9
  start-page: 5150
  issue: 1
  year: 2018
  ident: 10.1016/j.advms.2019.12.001_bib63
  article-title: Spatially and functionally distinct subcles of breast cancer-associated fibroblasts revealed by single cell RNA sequencing
  publication-title: Nat Commun
  doi: 10.1038/s41467-018-07582-3
  contributor:
    fullname: Bartoschek
– volume: 9
  start-page: 4536
  issue: 1
  year: 2019
  ident: 10.1016/j.advms.2019.12.001_bib75
  article-title: Single-cell transcriptome analysis identifies distinct cell types and intercellular niche signalling in a primary gastric organoid model
  publication-title: Sci Rep
  doi: 10.1038/s41598-019-40809-x
  contributor:
    fullname: Chen
– volume: 8
  start-page: 53763
  issue: 32
  year: 2017
  ident: 10.1016/j.advms.2019.12.001_bib89
  article-title: Advances in single-cell RNA sequencing and its applications in cancer research
  publication-title: Oncotarget
  doi: 10.18632/oncotarget.17893
  contributor:
    fullname: Zhu
– volume: 3
  start-page: 151
  issue: 1
  year: 2019
  ident: 10.1016/j.advms.2019.12.001_bib91
  article-title: Deciphering human tumor biology by single-cell expression profiling
  publication-title: Annu Rev Cell Biol
  contributor:
    fullname: Tirosh
– volume: 110
  start-page: 469
  issue: 2
  year: 2014
  ident: 10.1016/j.advms.2019.12.001_bib24
  article-title: Interleukin-6 released by colon cancer-associated fibroblasts is critical for tumour angiogenesis: anti-interleukin-6 receptor antibody suppressed angiogenesis and inhibited tumour-stroma interaction
  publication-title: Br J Canc
  doi: 10.1038/bjc.2013.748
  contributor:
    fullname: Nagasaki
– volume: 30
  start-page: 777
  issue: 8
  year: 2012
  ident: 10.1016/j.advms.2019.12.001_bib39
  article-title: Full-length mRNA-Seq from single-cell levels of RNA and individual circulating tumor cells
  publication-title: Nat Biotechnol
  doi: 10.1038/nbt.2282
  contributor:
    fullname: Ramsköld
– volume: 3
  start-page: 106
  issue: 1
  year: 2014
  ident: 10.1016/j.advms.2019.12.001_bib46
  article-title: Single cell analysis: from technology to biology and medicine
  publication-title: Single Cell Biol
  contributor:
    fullname: Pan
– volume: 111
  start-page: 17947
  issue: 50
  year: 2014
  ident: 10.1016/j.advms.2019.12.001_bib49
  article-title: Dissecting the clonal origins of childhood acute lymphoblastic leukemia by single-cell genomics
  publication-title: Proc Natl Acad Sci U S A
  doi: 10.1073/pnas.1420822111
  contributor:
    fullname: Gawad
– volume: 59
  start-page: 85
  year: 2018
  ident: 10.1016/j.advms.2019.12.001_bib84
  article-title: Single cell analysis of normal and leukemic hematopoiesis
  publication-title: Mol Asp Med
  doi: 10.1016/j.mam.2017.08.006
  contributor:
    fullname: Povinelli
– volume: 48
  start-page: 509
  issue: 5–6
  year: 2004
  ident: 10.1016/j.advms.2019.12.001_bib32
  article-title: The stroma reaction myofibroblast: a key player in the control of tumor cell behavior
  publication-title: Int J Dev Biol
  doi: 10.1387/ijdb.041802ad
  contributor:
    fullname: Desmoulière
– volume: 124
  start-page: 31
  year: 2015
  ident: 10.1016/j.advms.2019.12.001_bib29
  article-title: The intricate role of CXCR4 in cancer
  publication-title: Adv Cancer Res
  doi: 10.1016/B978-0-12-411638-2.00002-1
  contributor:
    fullname: Chatterjee
– volume: 25
  start-page: 1499
  issue: 10
  year: 2015
  ident: 10.1016/j.advms.2019.12.001_bib51
  article-title: The first five years of single-cell cancer genomics and beyond
  publication-title: Genome Res
  doi: 10.1101/gr.191098.115
  contributor:
    fullname: Navin
– volume: 15
  start-page: 178
  issue: 3
  year: 2015
  ident: 10.1016/j.advms.2019.12.001_bib78
  article-title: Molecular mechanisms of epithelial-mesenchymal transition
  publication-title: Nat Rev Mol Cell Biol
  doi: 10.1038/nrm3758
  contributor:
    fullname: Lamouille
– volume: 25
  start-page: 3884
  issue: 13
  year: 2018
  ident: 10.1016/j.advms.2019.12.001_bib83
  article-title: Dissecting effects of anti-cancer drugs and cancer-associated fibroblasts by on-chip reconstitution of immunocompetent tumor microenvironments
  publication-title: Cell Rep
  doi: 10.1016/j.celrep.2018.12.015
  contributor:
    fullname: Nguyen
– volume: 150
  start-page: 1209
  issue: 6
  year: 2012
  ident: 10.1016/j.advms.2019.12.001_bib36
  article-title: Single-cell expression analyses during cellular reprogramming reveal an early stochastic and a late hierarchic phase
  publication-title: Cell
  doi: 10.1016/j.cell.2012.08.023
  contributor:
    fullname: Buganim
– volume: 18
  start-page: 84
  issue: 1
  year: 2016
  ident: 10.1016/j.advms.2019.12.001_bib8
  article-title: Tumor-associated stromal cells as key contributors to the tumor microenvironment
  publication-title: Breast Cancer Res
  doi: 10.1186/s13058-016-0740-2
  contributor:
    fullname: Bussard
– volume: 130
  start-page: 393
  issue: 2
  year: 1995
  ident: 10.1016/j.advms.2019.12.001_bib12
  article-title: Identification and characterization of a fibroblast marker: FSP1
  publication-title: J Cell Biol
  doi: 10.1083/jcb.130.2.393
  contributor:
    fullname: Strutz
– volume: 13
  start-page: 492
  issue: 4
  year: 2013
  ident: 10.1016/j.advms.2019.12.001_bib35
  article-title: Mapping cellular hierarchy by single-cell analysis of the cell surface repertoire
  publication-title: Cell Stem Cell
  doi: 10.1016/j.stem.2013.07.017
  contributor:
    fullname: Guo
– volume: 129
  start-page: 2384
  issue: 17
  year: 2017
  ident: 10.1016/j.advms.2019.12.001_bib88
  article-title: Single-cell molecular analysis defines therapy response and immunophenotype of stem cell subpopulations in CML
  publication-title: Blood
  doi: 10.1182/blood-2016-07-728873
  contributor:
    fullname: Warfvinge
– volume: 66
  start-page: 123
  issue: 3
  year: 2016
  ident: 10.1016/j.advms.2019.12.001_bib30
  article-title: Special cancer microenvironment in human colonic cancer: concept of cancer microenvironment formed by peritoneal invasion (CMPI) and implication of subperitoneal fibroblast in cancer progression
  publication-title: Pathol Int
  doi: 10.1111/pin.12389
  contributor:
    fullname: Kojima
– volume: 25
  start-page: 1458
  issue: 6
  year: 2018
  ident: 10.1016/j.advms.2019.12.001_bib81
  article-title: Analysis of single-cell RNA-seq identifies cell-cell communication associated with tumor characteristics
  publication-title: Cell Rep
  doi: 10.1016/j.celrep.2018.10.047
  contributor:
    fullname: Kumar
– volume: 344
  start-page: 1396
  issue: 6190
  year: 2014
  ident: 10.1016/j.advms.2019.12.001_bib40
  article-title: Single-cell RNA-seq highlights intratumoral heterogeneity in primary glioblastoma
  publication-title: Science
  doi: 10.1126/science.1254257
  contributor:
    fullname: Patel
– volume: 101
  start-page: 4966
  issue: 14
  year: 2004
  ident: 10.1016/j.advms.2019.12.001_bib28
  article-title: Reconstruction of functionally normal and malignant human breast tissues in mice
  publication-title: Proc Natl Acad Sci U S A
  doi: 10.1073/pnas.0401064101
  contributor:
    fullname: Kuperwasser
– volume: 15
  start-page: 166
  year: 2010
  ident: 10.1016/j.advms.2019.12.001_bib15
  article-title: Cancer associated fibroblasts (CAFs) in tumor microenvironment
  publication-title: Front Biosci (Landmark Ed).
  doi: 10.2741/3613
  contributor:
    fullname: Xing
– year: 2017
  ident: 10.1016/j.advms.2019.12.001_bib82
  contributor:
    fullname: Chen
– volume: 33
  start-page: 269
  issue: 3
  year: 2015
  ident: 10.1016/j.advms.2019.12.001_bib45
  article-title: Decoding the regulatory network of early blood development from single-cell gene expression measurements
  publication-title: Nat Biotechnol
  doi: 10.1038/nbt.3154
  contributor:
    fullname: Moignard
– start-page: 368605
  year: 2018
  ident: 10.1016/j.advms.2019.12.001_bib60
  contributor:
    fullname: Yin
– volume: 48
  start-page: 1193
  issue: 10
  year: 2016
  ident: 10.1016/j.advms.2019.12.001_bib86
  article-title: Lineage-specific and single-cell chromatin accessibility charts human hematopoiesis and leukemia evolution
  publication-title: Nat Genet
  doi: 10.1038/ng.3646
  contributor:
    fullname: Corces
– volume: 23
  start-page: 692
  issue: 6
  year: 2017
  ident: 10.1016/j.advms.2019.12.001_bib87
  article-title: Single-cell transcriptomics uncovers distinct molecular signatures of stem cells in chronic myeloid leukemia
  publication-title: Nat Med
  doi: 10.1038/nm.4336
  contributor:
    fullname: Giustacchini
– volume: 9
  start-page: 96
  issue: 1–2
  year: 2015
  ident: 10.1016/j.advms.2019.12.001_bib17
  article-title: Tenascin-C and integrins in cancer
  publication-title: Cell Adhes Migrat
  doi: 10.1080/19336918.2015.1008332
  contributor:
    fullname: Yoshida
– volume: 2008
  issue: 9
  year: 2008
  ident: 10.1016/j.advms.2019.12.001_bib33
  article-title: Method for single-cell sorting and expansion of genetically modified human embryonic stem cells
  publication-title: CSH Protoc
  contributor:
    fullname: Nicholas
– volume: 30
  start-page: 1143
  issue: 3
  year: 2013
  ident: 10.1016/j.advms.2019.12.001_bib21
  article-title: Isolation and characterization of biliary epithelial and stromal cells from resected human cholangiocarcinoma: a novel in vitro model to study tumor-stroma interactions
  publication-title: Oncol Rep
  doi: 10.3892/or.2013.2568
  contributor:
    fullname: Massani
– volume: 60
  start-page: 861
  issue: 6
  year: 2011
  ident: 10.1016/j.advms.2019.12.001_bib25
  article-title: Stromal biology and therapy in pancreatic cancer
  publication-title: Gut
  doi: 10.1136/gut.2010.226092
  contributor:
    fullname: Neesse
– volume: 15
  start-page: 204
  issue: 3
  year: 2016
  ident: 10.1016/j.advms.2019.12.001_bib5
  article-title: Single-cell analysis tools for drug discovery and development
  publication-title: Nat Rev Drug Discov
  doi: 10.1038/nrd.2015.16
  contributor:
    fullname: Heath
– volume: 5
  start-page: 87
  year: 2015
  ident: 10.1016/j.advms.2019.12.001_bib22
  article-title: Cancer-associated fibroblasts from lung tumors maintain their immunosuppressive abilities after high-dose irradiation
  publication-title: Front Oncol
  doi: 10.3389/fonc.2015.00087
  contributor:
    fullname: Gorchs
– volume: 313
  start-page: 1960
  issue: 5795
  year: 2006
  ident: 10.1016/j.advms.2019.12.001_bib1
  article-title: Type, density, and location of immune cells within human colorectal tumors predict clinical outcome
  publication-title: Science
  doi: 10.1126/science.1129139
  contributor:
    fullname: Galon
– volume: 9
  issue: 4
  year: 2014
  ident: 10.1016/j.advms.2019.12.001_bib20
  article-title: Chinese herbal medicine suppresses invasion-promoting capacity of cancer-associated fibroblasts in pancreatic cancer
  publication-title: PLoS One
  doi: 10.1371/journal.pone.0096177
  contributor:
    fullname: Chen
– volume: 352
  start-page: 189
  issue: 6282
  year: 2016
  ident: 10.1016/j.advms.2019.12.001_bib50
  article-title: Dissecting the multicellular ecosystem of metastatic melanoma by single-cell RNA-seq
  publication-title: Science
  doi: 10.1126/science.aad0501
  contributor:
    fullname: Tirosh
– volume: 5
  start-page: 609
  issue: 2
  year: 2013
  ident: 10.1016/j.advms.2019.12.001_bib23
  article-title: Effects of cancer-associated fibroblasts on the migration and invasion abilities of SGC-7901 gastric cancer cells
  publication-title: Oncol Lett
  doi: 10.3892/ol.2012.1023
  contributor:
    fullname: Hu
– volume: 17
  start-page: 390
  issue: 1
  year: 2017
  ident: 10.1016/j.advms.2019.12.001_bib66
  article-title: Single-cell mRNA profiling reveals transcriptional heterogeneity among pancreatic circulating tumour cells
  publication-title: BMC Canc
  doi: 10.1186/s12885-017-3385-3
  contributor:
    fullname: Lapin
– volume: 499
  start-page: 214
  issue: 7457
  year: 2013
  ident: 10.1016/j.advms.2019.12.001_bib85
  article-title: Mutational heterogeneity in cancer and the search for new cancer-associated genes
  publication-title: Nature
  doi: 10.1038/nature12213
  contributor:
    fullname: Lawrence
– volume: 8
  issue: 345
  year: 2016
  ident: 10.1016/j.advms.2019.12.001_bib71
  article-title: Tumor-derived circulating endothelial cell clusters in colorectal cancer
  publication-title: Sci Transl Med
  doi: 10.1126/scitranslmed.aad7369
  contributor:
    fullname: Cima
– volume: 73
  start-page: 2965
  issue: 10
  year: 2013
  ident: 10.1016/j.advms.2019.12.001_bib70
  article-title: Complex tumor genomes inferred from single circulating tumor cells by array-CGH and next-generation sequencing
  publication-title: Cancer Res
  doi: 10.1158/0008-5472.CAN-12-4140
  contributor:
    fullname: Heitzer
– volume: 8
  start-page: S20
  issue: 4 Suppl
  year: 2011
  ident: 10.1016/j.advms.2019.12.001_bib4
  article-title: Profiling metabolites and peptides in single cells
  publication-title: Nat Methods
  doi: 10.1038/nmeth.1549
  contributor:
    fullname: Rubakhin
– volume: 18
  start-page: 230
  issue: 4
  year: 2017
  ident: 10.1016/j.advms.2019.12.001_bib52
  article-title: Building a lineage from single cells: genetic techniques for cell lineage tracking
  publication-title: Nat Rev Genet
  doi: 10.1038/nrg.2016.159
  contributor:
    fullname: Woodworth
– volume: 8
  start-page: 73
  year: 2017
  ident: 10.1016/j.advms.2019.12.001_bib54
  article-title: Single-cell mRNA sequencing in cancer research: integrating the genomic fingerprint
  publication-title: Front Genet
  doi: 10.3389/fgene.2017.00073
  contributor:
    fullname: Müller
– volume: 20
  start-page: 9872
  issue: 29
  year: 2014
  ident: 10.1016/j.advms.2019.12.001_bib74
  article-title: Colorectal cancer in inflammatory bowel disease: the risk, pathogenesis, prevention and diagnosis
  publication-title: World J Gastroenterol
  doi: 10.3748/wjg.v20.i29.9872
  contributor:
    fullname: Kim
– volume: 51
  start-page: 1060
  issue: 6
  year: 2019
  ident: 10.1016/j.advms.2019.12.001_bib90
  article-title: High-throughput single-cell ChIP-seq identifies heterogeneity of chromatin states in breast cancer
  publication-title: Nat Genet
  doi: 10.1038/s41588-019-0424-9
  contributor:
    fullname: Grosselin
– volume: 6
  start-page: 618
  issue: 4
  year: 2007
  ident: 10.1016/j.advms.2019.12.001_bib14
  article-title: Heterogeneity of stromal fibroblasts in tumor
  publication-title: Cancer Biol Ther
  doi: 10.4161/cbt.6.4.4255
  contributor:
    fullname: Orimo
– volume: 7
  start-page: 2443
  issue: 4
  year: 2015
  ident: 10.1016/j.advms.2019.12.001_bib16
  article-title: Cancer-associated fibroblasts: their characteristics and their roles in tumor growth
  publication-title: Cancers
  doi: 10.3390/cancers7040902
  contributor:
    fullname: Shiga
– volume: 31
  start-page: 545
  issue: 6
  year: 2013
  ident: 10.1016/j.advms.2019.12.001_bib43
  article-title: viSNE enables visualization of high dimensional single-cell data and reveals phenotypic heterogeneity of leukemia
  publication-title: Nat Biotechnol
  doi: 10.1038/nbt.2594
  contributor:
    fullname: Amir
– volume: 22
  start-page: 3625
  issue: 13
  year: 2018
  ident: 10.1016/j.advms.2019.12.001_bib55
  article-title: Single-cell deconvolution of fibroblast heterogeneity in mouse pulmonary fibrosis
  publication-title: Cell Rep
  doi: 10.1016/j.celrep.2018.03.010
  contributor:
    fullname: Xie
– year: 2018
  ident: 10.1016/j.advms.2019.12.001_bib67
  contributor:
    fullname: Moncada
– volume: 144
  start-page: 598
  issue: 3
  year: 2017
  ident: 10.1016/j.advms.2019.12.001_bib79
  article-title: Single cell sequencing reveals heterogeneity within ovarian cancer epithelium and cancer associated stromal cells
  publication-title: Gynecol Oncol
  doi: 10.1016/j.ygyno.2017.01.015
  contributor:
    fullname: Winterhoff
– volume: 353
  start-page: 78
  issue: 6294
  year: 2016
  ident: 10.1016/j.advms.2019.12.001_bib68
  article-title: Visualization and analysis of gene expression in tissue sections by spatial transcriptomics
  publication-title: Science
  doi: 10.1126/science.aaf2403
  contributor:
    fullname: Ståhl
– volume: 175
  start-page: 372
  issue: 2
  year: 2018
  ident: 10.1016/j.advms.2019.12.001_bib73
  article-title: Structural remodeling of the human colonic mesenchyme in inflammatory bowel disease
  publication-title: Cell
  doi: 10.1016/j.cell.2018.08.067
  contributor:
    fullname: Kinchen
– volume: 8
  start-page: S6
  issue: 4 Suppl
  year: 2011
  ident: 10.1016/j.advms.2019.12.001_bib3
  article-title: Development and applications of single-cell transcriptome analysis
  publication-title: Nat Methods
  doi: 10.1038/nmeth.1557
  contributor:
    fullname: Tang
– volume: 25
  start-page: 2194
  issue: 7
  year: 2018
  ident: 10.1016/j.advms.2019.12.001_bib65
  article-title: Single cell transcriptomics of pancreatic cancer precursors demonstrates epithelial and microenvironmental heterogeneity as an early event in neoplastic progression
  publication-title: Clin Cancer Res
  doi: 10.1158/1078-0432.CCR-18-1955
  contributor:
    fullname: Bernard
– volume: 22
  start-page: 375
  issue: 4
  year: 2003
  ident: 10.1016/j.advms.2019.12.001_bib77
  article-title: The role of integrin-linked kinase (ILK) in cancer progression
  publication-title: Cancer Metastasis Rev
  doi: 10.1023/A:1023777013659
  contributor:
    fullname: Persad
– volume: 16
  start-page: 73
  issue: 1
  year: 2017
  ident: 10.1016/j.advms.2019.12.001_bib58
  article-title: Cellular organization and molecular differentiation model of breast cancer-associated fibroblasts
  publication-title: Mol Cancer
  doi: 10.1186/s12943-017-0642-7
  contributor:
    fullname: Busch
– volume: 19
  start-page: 1423
  issue: 11
  year: 2013
  ident: 10.1016/j.advms.2019.12.001_bib9
  article-title: Microenvironmental regulation of tumor progression and metastasis
  publication-title: Nat Med
  doi: 10.1038/nm.3394
  contributor:
    fullname: Quail
– volume: 24
  start-page: 1277
  issue: 8
  year: 2018
  ident: 10.1016/j.advms.2019.12.001_bib57
  article-title: Phenotype molding of stromal cells in the lung tumor microenvironment
  publication-title: Nat Med
  doi: 10.1038/s41591-018-0096-5
  contributor:
    fullname: Lambrechts
– volume: 9
  start-page: 2897
  issue: 1
  year: 2018
  ident: 10.1016/j.advms.2019.12.001_bib62
  article-title: Targeting stromal remodeling and cancer stem cell plasticity overcomes chemoresistance in triple negative breast cancer
  publication-title: Nat Commun
  doi: 10.1038/s41467-018-05220-6
  contributor:
    fullname: Cazet
– volume: 33
  start-page: 2423
  issue: 19
  year: 2014
  ident: 10.1016/j.advms.2019.12.001_bib19
  article-title: Cancer-associated fibroblasts and M2-polarized macrophages synergize during prostate carcinoma progression
  publication-title: Oncogene
  doi: 10.1038/onc.2013.191
  contributor:
    fullname: Comito
– volume: 332
  start-page: 687
  issue: 6030
  year: 2011
  ident: 10.1016/j.advms.2019.12.001_bib41
  article-title: Single-cell mass cytometry of differential immune and drug responses across a human hematopoietic continuum
  publication-title: Science
  doi: 10.1126/science.1198704
  contributor:
    fullname: Bendall
– volume: 172
  start-page: 841
  issue: 4
  year: 2018
  ident: 10.1016/j.advms.2019.12.001_bib61
  article-title: CD10+GPR77+ cancer-associated fibroblasts promote cancer formation and chemoresistance by sustaining cancer stemness
  publication-title: Cell
  doi: 10.1016/j.cell.2018.01.009
  contributor:
    fullname: Su
– volume: 13
  start-page: 2082
  issue: 7
  year: 2007
  ident: 10.1016/j.advms.2019.12.001_bib7
  article-title: Stromal myofibroblasts predict disease recurrence for colorectal cancer
  publication-title: Clin Cancer Res
  doi: 10.1158/1078-0432.CCR-06-2191
  contributor:
    fullname: Tsujino
– volume: 274
  start-page: 36505
  issue: 51
  year: 1999
  ident: 10.1016/j.advms.2019.12.001_bib13
  article-title: Fibroblast activation protein, a dual specificity serine protease expressed in reactive human tumor stromal fibroblasts
  publication-title: J Biol Chem
  doi: 10.1074/jbc.274.51.36505
  contributor:
    fullname: Park
– volume: 343
  start-page: 776
  issue: 6172
  year: 2014
  ident: 10.1016/j.advms.2019.12.001_bib38
  article-title: Massively parallel single-cell RNA-seq for marker-free decomposition of tissues into cell types
  publication-title: Science
  doi: 10.1126/science.1247651
  contributor:
    fullname: Jaitin
– volume: 10
  start-page: 1403
  issue: 11
  year: 2012
  ident: 10.1016/j.advms.2019.12.001_bib27
  article-title: Cancer-associated fibroblasts drive the progression of metastasis through both paracrine and mechanical pressure on cancer tissue
  publication-title: Mol Canc. Res
  doi: 10.1158/1541-7786.MCR-12-0307
  contributor:
    fullname: Karagiannis
– volume: 5
  start-page: F1000
  year: 2016
  ident: 10.1016/j.advms.2019.12.001_bib31
  article-title: The myofibroblast in wound healing and fibrosis: answered and unanswered questions
  publication-title: F1000Research
  doi: 10.12688/f1000research.8190.1
  contributor:
    fullname: Bochaton-Piallat
– volume: 15
  start-page: 363
  issue: 4
  year: 2013
  ident: 10.1016/j.advms.2019.12.001_bib37
  article-title: Characterization of transcriptional networks in blood stem and progenitor cells using high-throughput single-cell gene expression analysis
  publication-title: Nat Cell Biol
  doi: 10.1038/ncb2709
  contributor:
    fullname: Moignard
– volume: 298
  start-page: 580
  issue: 5593
  year: 2002
  ident: 10.1016/j.advms.2019.12.001_bib34
  article-title: Microfluidic large-scale integration
  publication-title: Science
  doi: 10.1126/science.1076996
  contributor:
    fullname: Thorsen
– volume: 33
  start-page: 463
  issue: 3
  year: 2018
  ident: 10.1016/j.advms.2019.12.001_bib59
  article-title: Fibroblast heterogeneity and immunosuppressive environment in human breast cancer
  publication-title: Cancer Cell
  doi: 10.1016/j.ccell.2018.01.011
  contributor:
    fullname: Costa
– volume: 214
  start-page: 579
  issue: 3
  year: 2017
  ident: 10.1016/j.advms.2019.12.001_bib11
  article-title: Distinct populations of inflammatory fibroblasts and myofibroblasts in pancreatic cancer
  publication-title: J Exp Med
  doi: 10.1084/jem.20162024
  contributor:
    fullname: Öhlund
– volume: 15
  start-page: 130
  year: 2015
  ident: 10.1016/j.advms.2019.12.001_bib18
  article-title: A functional in vitro model of heterotypic interactions reveals a role for interferon-positive carcinoma associated fibroblasts in breast cancer
  publication-title: BMC Canc
  doi: 10.1186/s12885-015-1117-0
  contributor:
    fullname: Hosein
– volume: 81A
  start-page: 552
  issue: 7
  year: 2012
  ident: 10.1016/j.advms.2019.12.001_bib42
  article-title: Single-cell mass cytometry adapted to measurements of the cell cycle
  publication-title: Cytometry Part A
  doi: 10.1002/cyto.a.22075
  contributor:
    fullname: Behbehani
– volume: 49
  start-page: 708
  issue: 5
  year: 2017
  ident: 10.1016/j.advms.2019.12.001_bib72
  article-title: Reference component analysis of single-cell transcriptomes elucidates cellular heterogeneity in human colorectal tumors
  publication-title: Nat Genet
  doi: 10.1038/ng.3818
  contributor:
    fullname: Li
– volume: 14
  start-page: 518
  issue: 5
  year: 2008
  ident: 10.1016/j.advms.2019.12.001_bib2
  article-title: Stromal gene expression predicts clinical outcome in breast cancer
  publication-title: Nat Med
  doi: 10.1038/nm1764
  contributor:
    fullname: Finak
– volume: 352
  start-page: 189
  issue: 6282
  year: 2016
  ident: 10.1016/j.advms.2019.12.001_bib6
  article-title: Dissecting the multicellular ecosystem of metastatic melanoma by single-cell RNA-seq
  publication-title: Science
  doi: 10.1126/science.aad0501
  contributor:
    fullname: Tirosh
SSID ssj0062600
Score 2.3119295
SecondaryResourceType review_article
Snippet Besides malignant cells, the tumour microenvironment consists of various stromal cells such as cancer-associated fibroblasts (CAFs) and myofibroblasts....
SourceID proquest
crossref
pubmed
elsevier
SourceType Aggregation Database
Index Database
Publisher
StartPage 163
SubjectTerms Biomarkers, Tumor - genetics
Cancer
Cancer-Associated Fibroblasts - metabolism
Cancer-Associated Fibroblasts - pathology
Gene Expression Regulation, Neoplastic
Humans
Microenvironment
Neoplasms - genetics
Neoplasms - metabolism
Neoplasms - pathology
Single-cell analysis
Single-Cell Analysis - methods
Solid tumour
Stromal Cells - metabolism
Stromal Cells - pathology
Stromal fibroblast
Tumor Microenvironment
Title Single-cell analysis on stromal fibroblasts in the microenvironment of solid tumours
URI https://dx.doi.org/10.1016/j.advms.2019.12.001
https://www.ncbi.nlm.nih.gov/pubmed/31972467
https://search.proquest.com/docview/2344271944
Volume 65
hasFullText 1
inHoldings 1
isFullTextHit
isPrint
link http://utb.summon.serialssolutions.com/2.0.0/link/0/eLvHCXMwnV3NS8MwFA9jgngRv50fI4JH6_qRtM1xDMdU3GUb7BbSNoGKa8fWefRv9yVNh4J68FZKQtr30vf7vfR9IHQbK0mlcoUjmQ8OSpYFjlAqcjKAs4y6cJmYap_jcDQjT3M6b6FBkwujwyqt7a9turHW9k7PSrO3zPPexItZqBNggILo1nI60ZwAGMGevv_Yhnlovm6SImGwo0c3lYdMjJfI3he6ZrfHzJmg7QzzAzr9xj4NCg0P0L6lj7hfP-EhasniCO2-2B_kx2g6ASh6k44-j8fCFhzBZYHX1apcwEwF7nGZAGWu1jgvMNA_vNAxeV8S3nCpMOzIPMPVZgELrk_QbPgwHYwc2zjBSQPKKocByYsyEpn6fpJ6oIwUgDn1dSmfQCTA0pTvxzTM3DAJEwWQLqUgAbjKxBxxnKJ2URbyHGE3FRFLqAwC4IlpqgSLgHFJRpUgRKq4g-4agfFlXR-DN4Fjr9zIl2v5cs_X4XMdFDZC5d_UzMGC_z3xplEBhw9AS1EUstzAoIAQeDFGSAed1brZPkmgm6oBFFz8d9lLtOdrB9sEnV2hdrXayGtgIVXSNdusi3b6j8-j8Sf0JNt2
link.rule.ids 315,786,790,4521,24144,27957,27958,45620,45714
linkProvider Elsevier
linkToHtml http://utb.summon.serialssolutions.com/2.0.0/link/0/eLvHCXMwnV3NS8MwFH9MBQVB_HZ-RvBoXdcm7XIUUaZuXpzgLaRtAhPXDtd59G_3vawdCurBWykJSd9L3--X5H0AnHWsEcb62jMywA1KloWetjb2MoSzTPj4mLhsnw9R94nfPYvnBlzVsTDkVlnZ_plNd9a6etOqpNkaD4etx3ZHRhQAgxSESsuJBVgiOk_1Gy4-5n4eRNhdVCS29qh5nXrIOXnp7H1ESbvb0h0KVqVhfoCn3-ing6GbdVir-CO7nE1xAxom34TlfnVDvgWDR8SiV-PRgTzTVcYRVuRsUr4VI-xpcX9cJMiZywkb5gz5HxuRU96XiDdWWIZLcpixcjrCASfb8HRzPbjqelXlBC8NhSw9iSwvznjsEvwZ0UZtpIjMaUC5fEKdIE2zQdARUeZHSZRYxHRjNA9xr8zdGccOLOZFbvaA-amOZSJMGCJRTFOrZYyUy0hhNefGdppwXgtMjWcJMlTtOfainHwVyVe1A_Kfa0JUC1V907NCE_53x9NaBQr_AJKizk0xxUYh5_hhkvMm7M50M59JSFXVEAv2_zvsCax0B_2e6t0-3B_AaoDsmsphkA_aISyWb1NzhKSkTI7dovsE3HTdbg
openUrl ctx_ver=Z39.88-2004&ctx_enc=info%3Aofi%2Fenc%3AUTF-8&rfr_id=info%3Asid%2Fsummon.serialssolutions.com&rft_val_fmt=info%3Aofi%2Ffmt%3Akev%3Amtx%3Ajournal&rft.genre=article&rft.atitle=Single-cell+analysis+on+stromal+fibroblasts+in+the+microenvironment+of+solid+tumours&rft.jtitle=Advances+in+medical+sciences&rft.au=Musa%2C+Marahaini&rft.date=2020-03-01&rft.eissn=1898-4002&rft.volume=65&rft.issue=1&rft.spage=163&rft.epage=169&rft_id=info:doi/10.1016%2Fj.advms.2019.12.001&rft.externalDBID=NO_FULL_TEXT
thumbnail_l http://covers-cdn.summon.serialssolutions.com/index.aspx?isbn=/lc.gif&issn=1896-1126&client=summon
thumbnail_m http://covers-cdn.summon.serialssolutions.com/index.aspx?isbn=/mc.gif&issn=1896-1126&client=summon
thumbnail_s http://covers-cdn.summon.serialssolutions.com/index.aspx?isbn=/sc.gif&issn=1896-1126&client=summon