Comparison of two total cellular fatty acid analysis protocols to differentiate Rhizoctonia oryzae and R. oryzae-sativae

Two fatty acid analysis protocols (the MIDI and a modified MIDI method) were investigated for their utility to characterize and differentiate Rhizoctonia oryzae and R. oryzae-sativae isolates from four countries. Only the modified MIDI method permitted a clear differentiation between the two species...

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Published inMycologia Vol. 97; no. 1; pp. 77 - 83
Main Authors Lanoiselet, V.M, Cother, E.J, Cother, N.J, Ash, G.J, Harper, J.D.I
Format Journal Article
LanguageEnglish
Published England Taylor & Francis 2005
Mycological Society of America
Subjects
Acid soils
Anastomosis groups
Bacteria
Ceratobasidium oryzae-sativae
Chemical composition
FAME
fatty acid composition
Fatty acids
Fatty Acids - analysis
Fungi
host plants
identification
Methods
MIDI
Mycelium
Mycological Typing Techniques
Oryza - microbiology
Oryza sativa
Plant Diseases - microbiology
plant pathogenic fungi
Plants
provenance
Rhizoctonia
Rhizoctonia - chemistry
Rhizoctonia - classification
Rhizoctonia oryzae
Rhizoctonia oryzae-sativae
Rice
Waitea oryzae
Australia
United States
Uruguay
Japan
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Abstract Two fatty acid analysis protocols (the MIDI and a modified MIDI method) were investigated for their utility to characterize and differentiate Rhizoctonia oryzae and R. oryzae-sativae isolates from four countries. Only the modified MIDI method permitted a clear differentiation between the two species, regardless of the isolates' country of origin. The modified MIDI method gave the most consistent and reproducible fatty acid results. The failure of the MIDI method to differentiate between R. oryzae and R. oryzae-sativae isolates suggests that the 30 minutes saponification step is insufficient to completely break the cell wall of these two species. This study demonstrated that fatty acid profiles, obtained by the modified MIDI protocol, have the potential as a diagnostic tool for both R. oryzae and R. oryzae-sativae.
AbstractList Two fatty acid analysis protocols (the MIDI and a modified MIDI method) were investigated for their utility to characterize and differentiate Rhizoctonia oryzae and R. oryzae-sativae isolates from four countries. Only the modified MIDI method permitted a clear differentiation between the two species, regardless of the isolates' country of origin. The modified MIDI method gave the most consistent and reproducible fatty acid results. The failure of the MIDI method to differentiate between R. oryzae and R. oryzae-sativae isolates suggests that the 30 minutes saponification step is insufficient to completely break the cell wall of these two species. This study demonstrated that fatty acid profiles, obtained by the modified MIDI protocol, have the potential as a diagnostic tool for both R. oryzae and R. oryzae-sativae.
Author Cother, E.J
Cother, N.J
Ash, G.J
Harper, J.D.I
Lanoiselet, V.M
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Cites_doi 10.1094/Phyto-84-271
10.1016/S0007-1536(86)80161-9
10.1080/07060669009500980
10.1094/PHYTO.2001.91.9.821
10.1094/Phyto-83-278
10.1094/PDIS.2003.87.10.1233
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10.1111/j.1574-6968.1998.tb13102.x
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10.1094/Phyto-82-68
10.1071/AP01053
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10.2307/2990113
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References STAHL-AND-KLUG-1996
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LARKIN-AND-GROVES-2003
LANOISELET-ETAL-2001
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BUTLER-AND-BRACKER-1970
LOPES-DA-SILVA-ETAL-1998
MILLER-AND-BERGER-1985
JABAJI-HARE-ETAL-1990
GUDMESTAD-ETAL-1988
MATSUMOTO-ETAL-1996
MATSUMOTO-ETAL-1997
STEVENS-JOHNK-AND-JONES-1994
STEVENS-JOHNK-AND-JONES-1993
PANKHURST-ETAL-2001
STEVENS-JOHNK-AND-JONES-2001
STEVENS-JOHNK-AND-JONES-1992
PARMETER-ETAL-1969
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  doi: 10.1094/Phyto-84-271
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  doi: 10.1094/Phyto-82-68
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Snippet Two fatty acid analysis protocols (the MIDI and a modified MIDI method) were investigated for their utility to characterize and differentiate Rhizoctonia...
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SubjectTerms Acid soils
Anastomosis groups
Bacteria
Ceratobasidium oryzae-sativae
Chemical composition
FAME
fatty acid composition
Fatty acids
Fatty Acids - analysis
Fungi
host plants
identification
Methods
MIDI
Mycelium
Mycological Typing Techniques
Oryza - microbiology
Oryza sativa
Plant Diseases - microbiology
plant pathogenic fungi
Plants
provenance
Rhizoctonia
Rhizoctonia - chemistry
Rhizoctonia - classification
Rhizoctonia oryzae
Rhizoctonia oryzae-sativae
Rice
Waitea oryzae
Title Comparison of two total cellular fatty acid analysis protocols to differentiate Rhizoctonia oryzae and R. oryzae-sativae
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https://www.ncbi.nlm.nih.gov/pubmed/16389959
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Volume 97
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