LINE-1 amplification accompanies explosive genome repatterning in rodents
Transposable elements (TEs) sometimes induce karyotypic changes following recombination, breakage and rearrangement. We used FISH and Southern blot analyses to investigate the amount and distribution of LINE-1 retrotransposons in rodents (genus Taterillus, Muridae, Gerbillinae) that have recently un...
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Published in | Chromosome research Vol. 12; no. 8; pp. 787 - 793 |
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Main Authors | , , , , , |
Format | Journal Article |
Language | English |
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Springer Nature B.V
01.12.2004
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Abstract | Transposable elements (TEs) sometimes induce karyotypic changes following recombination, breakage and rearrangement. We used FISH and Southern blot analyses to investigate the amount and distribution of LINE-1 retrotransposons in rodents (genus Taterillus, Muridae, Gerbillinae) that have recently undergone an important genome repatterning. Our results were interpreted in a known phylogenetic framework and clearly showed that LINE-1 elements were greatly amplified and non-randomly distributed in the most rearranged karyotypes. A comparison between FISH and conventional banding patterns provided evidence that LINE-1 insertion sites and chromosome breakpoints were not strongly correlated, thus suggesting that LINE-1 amplification subsequently accompanied Taterillus chromosome evolution. Similar patterns are observed in some cases of genomic stresses (hybrid genomes, cancer and DNA-damaged cells) and usually associated with DNA hypomethylation. We propose that intensively repatterned genomes face transient stress phases during which some epigenetic features, such as DNA methylation, are relaxed, thus allowing TE amplification. |
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AbstractList | Transposable elements (TEs) sometimes induce karyotypic changes following recombination, breakage and rearrangement. We used FISH and Southern blot analyses to investigate the amount and distribution of LINE-1 retrotransposons in rodents (genus Taterillus, Muridae, Gerbillinae) that have recently undergone an important genome repatterning. Our results were interpreted in a known phylogenetic framework and clearly showed that LINE-1 elements were greatly amplified and non-randomly distributed in the most rearranged karyotypes. A comparison between FISH and conventional banding patterns provided evidence that LINE-1 insertion sites and chromosome breakpoints were not strongly correlated, thus suggesting that LINE-1 amplification subsequently accompanied Taterillus chromosome evolution. Similar patterns are observed in some cases of genomic stresses (hybrid genomes, cancer and DNA-damaged cells) and usually associated with DNA hypomethylation. We propose that intensively repatterned genomes face transient stress phases during which some epigenetic features, such as DNA methylation, are relaxed, thus allowing TE amplification.[PUBLICATION ABSTRACT] Transposable elements (TEs) sometimes induce karyotypic changes following recombination, breakage and rearrangement. We used FISH and Southern blot analyses to investigate the amount and distribution of LINE-1 retrotransposons in rodents (genus Taterillus, Muridae, Gerbillinae) that have recently undergone an important genome repatterning. Our results were interpreted in a known phylogenetic framework and clearly showed that LINE-1 elements were greatly amplified and non-randomly distributed in the most rearranged karyotypes. A comparison between FISH and conventional banding patterns provided evidence that LINE-1 insertion sites and chromosome breakpoints were not strongly correlated, thus suggesting that LINE-1 amplification subsequently accompanied Taterillus chromosome evolution. Similar patterns are observed in some cases of genomic stresses (hybrid genomes, cancer and DNA-damaged cells) and usually associated with DNA hypomethylation. We propose that intensively repatterned genomes face transient stress phases during which some epigenetic features, such as DNA methylation, are relaxed, thus allowing TE amplification. |
Author | Volobouev, Vitaly Waters, Paul D Dobigny, Gauthier Ozouf-Costaz, Catherine Bonillo, Céline Coutanceau, Jean-Pierre |
Author_xml | – sequence: 1 givenname: Gauthier surname: Dobigny fullname: Dobigny, Gauthier email: dobigny@sun.ac.za organization: Laboratoire Origine, Structure et Evolution de la Biodiversité, Muséum National d'Histoire Naturelle, 55, rue Buffon, F75005, Paris, France. dobigny@sun.ac.za – sequence: 2 givenname: Catherine surname: Ozouf-Costaz fullname: Ozouf-Costaz, Catherine – sequence: 3 givenname: Paul D surname: Waters fullname: Waters, Paul D – sequence: 4 givenname: Céline surname: Bonillo fullname: Bonillo, Céline – sequence: 5 givenname: Jean-Pierre surname: Coutanceau fullname: Coutanceau, Jean-Pierre – sequence: 6 givenname: Vitaly surname: Volobouev fullname: Volobouev, Vitaly |
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Snippet | Transposable elements (TEs) sometimes induce karyotypic changes following recombination, breakage and rearrangement. We used FISH and Southern blot analyses to... |
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SubjectTerms | Animals Blotting, Southern Chromosomes, Mammalian - genetics Deoxyribonucleic acid DNA DNA methylation DNA Transposable Elements - genetics Genetics Genome Gerbillinae - genetics In Situ Hybridization, Fluorescence Karyotyping Long Interspersed Nucleotide Elements - genetics Muridae Nucleic Acid Amplification Techniques Phylogeny |
Title | LINE-1 amplification accompanies explosive genome repatterning in rodents |
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