Photosynthate distribution determines spatial patterns in the rhizosphere microbiota of the maize root system

The spatial variation and underlying mechanisms of pattern formation in the rhizosphere microbiome are not well understood. We demonstrate that specific patterns in the distribution of recently fixed carbon within the plant root system influence the spatial organization of the rhizosphere microbiota...

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Published inNature communications Vol. 16; no. 1; pp. 7286 - 16
Main Authors Schultes, Sina R., Rüger, Lioba, Niedeggen, Daniela, Freudenthal, Jule, Frindte, Katharina, Becker, Maximilian F., Metzner, Ralf, Pflugfelder, Daniel, Chlubek, Antonia, Hinz, Carsten, van Dusschoten, Dagmar, Bauke, Sara L., Bonkowski, Michael, Watt, Michelle, Koller, Robert, Knief, Claudia
Format Journal Article
LanguageEnglish
Published London Nature Publishing Group UK 07.08.2025
Nature Publishing Group
Nature Portfolio
Subjects
45/71
45/77
631/158/855
631/326/2565/2134
631/449/1736
704/47/4113
Bacteria - classification
Bacteria - genetics
Bacteria - metabolism
Carbon
Carbon - metabolism
Carbon 13
Carbon Isotopes - metabolism
Community structure
Corn
Food chains
Food webs
Fungi - metabolism
Heterogeneity
Humanities and Social Sciences
Isotopic tracers
Labeling
Localization
Magnetic resonance imaging
Microbiomes
Microbiota
Microbiota - physiology
Microorganisms
multidisciplinary
Pattern formation
Phenotyping
Photosynthesis - physiology
Plant roots
Plant Roots - metabolism
Plant Roots - microbiology
Positron emission
Positron emission tomography
Predators
Rhizosphere
Rhizosphere microorganisms
Roots
Science
Science (multidisciplinary)
Soil - chemistry
Soil Microbiology
Spatial discrimination
Spatial heterogeneity
Spatial variations
Zea mays - metabolism
Zea mays - microbiology
Online AccessGet full text

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Abstract The spatial variation and underlying mechanisms of pattern formation in the rhizosphere microbiome are not well understood. We demonstrate that specific patterns in the distribution of recently fixed carbon within the plant root system influence the spatial organization of the rhizosphere microbiota. Non-invasive analysis of carbon allocation in the maize root system by 11 C tracer-based positron emission tomography combined with magnetic resonance imaging reveals high spatial heterogeneity with highest 11 C-signal accumulations at root tips and differences between root types. Strong correlations exist between root internal carbon allocation and rhizodeposition as evident from 13 CO 2 labeling. These patterns are reflected in the bacterial, fungal and protistan community structure in rhizosphere soil with differences depending on root structure and related spatial heterogeneities in carbon allocation. Especially the active consumers of 13 C-labeled rhizodeposits are responsive to photosynthate distribution with differences in 13 C-labeling according to their spatial localization within the root system. Thus, root photosynthate allocation supports distinct habitats in the plant root system and is a key determinant of microbial food web development, evident from 13 C-labeling of diverse bacterial and protistan predators, especially at root bases, resulting in characteristic spatiotemporal patterns in the rhizosphere microbiome. The combination of isotopic tracers with root phenotyping reveals specific patterns in photosynthate allocation. These patterns are reflected in rhizodeposition and result in spatially distinct microbiomes within the plant root system.
AbstractList The spatial variation and underlying mechanisms of pattern formation in the rhizosphere microbiome are not well understood. We demonstrate that specific patterns in the distribution of recently fixed carbon within the plant root system influence the spatial organization of the rhizosphere microbiota. Non-invasive analysis of carbon allocation in the maize root system by 11C tracer-based positron emission tomography combined with magnetic resonance imaging reveals high spatial heterogeneity with highest 11C-signal accumulations at root tips and differences between root types. Strong correlations exist between root internal carbon allocation and rhizodeposition as evident from 13CO2 labeling. These patterns are reflected in the bacterial, fungal and protistan community structure in rhizosphere soil with differences depending on root structure and related spatial heterogeneities in carbon allocation. Especially the active consumers of 13C-labeled rhizodeposits are responsive to photosynthate distribution with differences in 13C-labeling according to their spatial localization within the root system. Thus, root photosynthate allocation supports distinct habitats in the plant root system and is a key determinant of microbial food web development, evident from 13C-labeling of diverse bacterial and protistan predators, especially at root bases, resulting in characteristic spatiotemporal patterns in the rhizosphere microbiome.The spatial variation and underlying mechanisms of pattern formation in the rhizosphere microbiome are not well understood. We demonstrate that specific patterns in the distribution of recently fixed carbon within the plant root system influence the spatial organization of the rhizosphere microbiota. Non-invasive analysis of carbon allocation in the maize root system by 11C tracer-based positron emission tomography combined with magnetic resonance imaging reveals high spatial heterogeneity with highest 11C-signal accumulations at root tips and differences between root types. Strong correlations exist between root internal carbon allocation and rhizodeposition as evident from 13CO2 labeling. These patterns are reflected in the bacterial, fungal and protistan community structure in rhizosphere soil with differences depending on root structure and related spatial heterogeneities in carbon allocation. Especially the active consumers of 13C-labeled rhizodeposits are responsive to photosynthate distribution with differences in 13C-labeling according to their spatial localization within the root system. Thus, root photosynthate allocation supports distinct habitats in the plant root system and is a key determinant of microbial food web development, evident from 13C-labeling of diverse bacterial and protistan predators, especially at root bases, resulting in characteristic spatiotemporal patterns in the rhizosphere microbiome.
The spatial variation and underlying mechanisms of pattern formation in the rhizosphere microbiome are not well understood. We demonstrate that specific patterns in the distribution of recently fixed carbon within the plant root system influence the spatial organization of the rhizosphere microbiota. Non-invasive analysis of carbon allocation in the maize root system by 11C tracer-based positron emission tomography combined with magnetic resonance imaging reveals high spatial heterogeneity with highest 11C-signal accumulations at root tips and differences between root types. Strong correlations exist between root internal carbon allocation and rhizodeposition as evident from 13CO2 labeling. These patterns are reflected in the bacterial, fungal and protistan community structure in rhizosphere soil with differences depending on root structure and related spatial heterogeneities in carbon allocation. Especially the active consumers of 13C-labeled rhizodeposits are responsive to photosynthate distribution with differences in 13C-labeling according to their spatial localization within the root system. Thus, root photosynthate allocation supports distinct habitats in the plant root system and is a key determinant of microbial food web development, evident from 13C-labeling of diverse bacterial and protistan predators, especially at root bases, resulting in characteristic spatiotemporal patterns in the rhizosphere microbiome.The combination of isotopic tracers with root phenotyping reveals specific patterns in photosynthate allocation. These patterns are reflected in rhizodeposition and result in spatially distinct microbiomes within the plant root system.
The spatial variation and underlying mechanisms of pattern formation in the rhizosphere microbiome are not well understood. We demonstrate that specific patterns in the distribution of recently fixed carbon within the plant root system influence the spatial organization of the rhizosphere microbiota. Non-invasive analysis of carbon allocation in the maize root system by C tracer-based positron emission tomography combined with magnetic resonance imaging reveals high spatial heterogeneity with highest C-signal accumulations at root tips and differences between root types. Strong correlations exist between root internal carbon allocation and rhizodeposition as evident from CO labeling. These patterns are reflected in the bacterial, fungal and protistan community structure in rhizosphere soil with differences depending on root structure and related spatial heterogeneities in carbon allocation. Especially the active consumers of C-labeled rhizodeposits are responsive to photosynthate distribution with differences in C-labeling according to their spatial localization within the root system. Thus, root photosynthate allocation supports distinct habitats in the plant root system and is a key determinant of microbial food web development, evident from C-labeling of diverse bacterial and protistan predators, especially at root bases, resulting in characteristic spatiotemporal patterns in the rhizosphere microbiome.
The spatial variation and underlying mechanisms of pattern formation in the rhizosphere microbiome are not well understood. We demonstrate that specific patterns in the distribution of recently fixed carbon within the plant root system influence the spatial organization of the rhizosphere microbiota. Non-invasive analysis of carbon allocation in the maize root system by 11 C tracer-based positron emission tomography combined with magnetic resonance imaging reveals high spatial heterogeneity with highest 11 C-signal accumulations at root tips and differences between root types. Strong correlations exist between root internal carbon allocation and rhizodeposition as evident from 13 CO 2 labeling. These patterns are reflected in the bacterial, fungal and protistan community structure in rhizosphere soil with differences depending on root structure and related spatial heterogeneities in carbon allocation. Especially the active consumers of 13 C-labeled rhizodeposits are responsive to photosynthate distribution with differences in 13 C-labeling according to their spatial localization within the root system. Thus, root photosynthate allocation supports distinct habitats in the plant root system and is a key determinant of microbial food web development, evident from 13 C-labeling of diverse bacterial and protistan predators, especially at root bases, resulting in characteristic spatiotemporal patterns in the rhizosphere microbiome. The combination of isotopic tracers with root phenotyping reveals specific patterns in photosynthate allocation. These patterns are reflected in rhizodeposition and result in spatially distinct microbiomes within the plant root system.
Abstract The spatial variation and underlying mechanisms of pattern formation in the rhizosphere microbiome are not well understood. We demonstrate that specific patterns in the distribution of recently fixed carbon within the plant root system influence the spatial organization of the rhizosphere microbiota. Non-invasive analysis of carbon allocation in the maize root system by 11C tracer-based positron emission tomography combined with magnetic resonance imaging reveals high spatial heterogeneity with highest 11C-signal accumulations at root tips and differences between root types. Strong correlations exist between root internal carbon allocation and rhizodeposition as evident from 13CO2 labeling. These patterns are reflected in the bacterial, fungal and protistan community structure in rhizosphere soil with differences depending on root structure and related spatial heterogeneities in carbon allocation. Especially the active consumers of 13C-labeled rhizodeposits are responsive to photosynthate distribution with differences in 13C-labeling according to their spatial localization within the root system. Thus, root photosynthate allocation supports distinct habitats in the plant root system and is a key determinant of microbial food web development, evident from 13C-labeling of diverse bacterial and protistan predators, especially at root bases, resulting in characteristic spatiotemporal patterns in the rhizosphere microbiome.
The spatial variation and underlying mechanisms of pattern formation in the rhizosphere microbiome are not well understood. We demonstrate that specific patterns in the distribution of recently fixed carbon within the plant root system influence the spatial organization of the rhizosphere microbiota. Non-invasive analysis of carbon allocation in the maize root system by 11 C tracer-based positron emission tomography combined with magnetic resonance imaging reveals high spatial heterogeneity with highest 11 C-signal accumulations at root tips and differences between root types. Strong correlations exist between root internal carbon allocation and rhizodeposition as evident from 13 CO 2 labeling. These patterns are reflected in the bacterial, fungal and protistan community structure in rhizosphere soil with differences depending on root structure and related spatial heterogeneities in carbon allocation. Especially the active consumers of 13 C-labeled rhizodeposits are responsive to photosynthate distribution with differences in 13 C-labeling according to their spatial localization within the root system. Thus, root photosynthate allocation supports distinct habitats in the plant root system and is a key determinant of microbial food web development, evident from 13 C-labeling of diverse bacterial and protistan predators, especially at root bases, resulting in characteristic spatiotemporal patterns in the rhizosphere microbiome.
ArticleNumber 7286
Author Knief, Claudia
Becker, Maximilian F.
Bonkowski, Michael
Schultes, Sina R.
Frindte, Katharina
Freudenthal, Jule
Chlubek, Antonia
Niedeggen, Daniela
Pflugfelder, Daniel
Watt, Michelle
van Dusschoten, Dagmar
Rüger, Lioba
Hinz, Carsten
Metzner, Ralf
Bauke, Sara L.
Koller, Robert
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Snippet The spatial variation and underlying mechanisms of pattern formation in the rhizosphere microbiome are not well understood. We demonstrate that specific...
Abstract The spatial variation and underlying mechanisms of pattern formation in the rhizosphere microbiome are not well understood. We demonstrate that...
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45/77
631/158/855
631/326/2565/2134
631/449/1736
704/47/4113
Bacteria - classification
Bacteria - genetics
Bacteria - metabolism
Carbon
Carbon - metabolism
Carbon 13
Carbon Isotopes - metabolism
Community structure
Corn
Food chains
Food webs
Fungi - metabolism
Heterogeneity
Humanities and Social Sciences
Isotopic tracers
Labeling
Localization
Magnetic resonance imaging
Microbiomes
Microbiota
Microbiota - physiology
Microorganisms
multidisciplinary
Pattern formation
Phenotyping
Photosynthesis - physiology
Plant roots
Plant Roots - metabolism
Plant Roots - microbiology
Positron emission
Positron emission tomography
Predators
Rhizosphere
Rhizosphere microorganisms
Roots
Science
Science (multidisciplinary)
Soil - chemistry
Soil Microbiology
Spatial discrimination
Spatial heterogeneity
Spatial variations
Zea mays - metabolism
Zea mays - microbiology
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Title Photosynthate distribution determines spatial patterns in the rhizosphere microbiota of the maize root system
URI https://link.springer.com/article/10.1038/s41467-025-62550-y
https://www.ncbi.nlm.nih.gov/pubmed/40774973
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