Potential implications of the glycosylation patterns in collagen α1(I) and α2(I) chains for fibril assembly and growth
[Display omitted] •Post-translational modifications of collagen from four animals are identified.•Nine new hydroxylysine glycosylation sites identified in collagen Type I.•Lysine oxidation patterns in collagen type I display species variation.•d-periodic axial distribution of glycosylated hydroxylys...
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Published in | Journal of structural biology Vol. 215; no. 1; p. 107938 |
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Main Authors | , , , |
Format | Journal Article |
Language | English |
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United States
Elsevier Inc
01.03.2023
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Abstract | [Display omitted]
•Post-translational modifications of collagen from four animals are identified.•Nine new hydroxylysine glycosylation sites identified in collagen Type I.•Lysine oxidation patterns in collagen type I display species variation.•d-periodic axial distribution of glycosylated hydroxylysines implies a structural role.•Glycosylated lysine residues may play a part in assembly and size limitation of fibrils.
O-Glycosylation of hydroxylysine (Hyl) in collagen occurs at an early stage of biosynthesis before the triple-helix has formed. This simple post-translational modification (PTM) of lysine by either a galactosyl or glucosylgalactosyl moiety is highly conserved in collagens and depends on the species, type of tissue and the collagen amino acid sequence. The structural/functional reason why only specific lysines are modified is poorly understood, and has led to increased efforts to map the sites of PTMs on collagen sequences from different species and to ascertain their potential role in vivo. To investigate this, we purified collagen type I (Col1) from the skins of four animals, then used mass spectrometry and proteomic techniques to identify lysines that were oxidised, galactosylated, glucosylgalactosylated, or glycated in its mature sequence. We found 18 out of the 38 lysines in collagen type Iα1, (Col1A1) and 7 of the 30 lysines in collagen type Iα2 (Col1A2) were glycosylated. Six of these modifications had not been reported before, and included a lysine involved in crosslinking collagen molecules. A Fourier transform analysis of the positions of the glycosylated hydroxylysines showed they display a regular axial distribution with the same d-period observed in collagen fibrils. The significance of this finding in terms of the assembly of collagen molecules into fibrils and of potential restrictions on the growth of the collagen fibrils is discussed. |
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AbstractList | [Display omitted]
•Post-translational modifications of collagen from four animals are identified.•Nine new hydroxylysine glycosylation sites identified in collagen Type I.•Lysine oxidation patterns in collagen type I display species variation.•d-periodic axial distribution of glycosylated hydroxylysines implies a structural role.•Glycosylated lysine residues may play a part in assembly and size limitation of fibrils.
O-Glycosylation of hydroxylysine (Hyl) in collagen occurs at an early stage of biosynthesis before the triple-helix has formed. This simple post-translational modification (PTM) of lysine by either a galactosyl or glucosylgalactosyl moiety is highly conserved in collagens and depends on the species, type of tissue and the collagen amino acid sequence. The structural/functional reason why only specific lysines are modified is poorly understood, and has led to increased efforts to map the sites of PTMs on collagen sequences from different species and to ascertain their potential role in vivo. To investigate this, we purified collagen type I (Col1) from the skins of four animals, then used mass spectrometry and proteomic techniques to identify lysines that were oxidised, galactosylated, glucosylgalactosylated, or glycated in its mature sequence. We found 18 out of the 38 lysines in collagen type Iα1, (Col1A1) and 7 of the 30 lysines in collagen type Iα2 (Col1A2) were glycosylated. Six of these modifications had not been reported before, and included a lysine involved in crosslinking collagen molecules. A Fourier transform analysis of the positions of the glycosylated hydroxylysines showed they display a regular axial distribution with the same d-period observed in collagen fibrils. The significance of this finding in terms of the assembly of collagen molecules into fibrils and of potential restrictions on the growth of the collagen fibrils is discussed. O-Glycosylation of hydroxylysine (Hyl) in collagen occurs at an early stage of biosynthesis before the triple-helix has formed. This simple post-translational modification (PTM) of lysine by either a galactosyl or glucosylgalactosyl moiety is highly conserved in collagens and depends on the species, type of tissue and the collagen amino acid sequence. The structural/functional reason why only specific lysines are modified is poorly understood, and has led to increased efforts to map the sites of PTMs on collagen sequences from different species and to ascertain their potential role in vivo. To investigate this, we purified collagen type I (Col1) from the skins of four animals, then used mass spectrometry and proteomic techniques to identify lysines that were oxidised, galactosylated, glucosylgalactosylated, or glycated in its mature sequence. We found 18 out of the 38 lysines in collagen type Iα1, (Col1A1) and 7 of the 30 lysines in collagen type Iα2 (Col1A2) were glycosylated. Six of these modifications had not been reported before, and included a lysine involved in crosslinking collagen molecules. A Fourier transform analysis of the positions of the glycosylated hydroxylysines showed they display a regular axial distribution with the same d-period observed in collagen fibrils. The significance of this finding in terms of the assembly of collagen molecules into fibrils and of potential restrictions on the growth of the collagen fibrils is discussed. |
ArticleNumber | 107938 |
Author | Parry, David A.D. Visser, D.R. Norris, G.E Loo, T.S. |
Author_xml | – sequence: 1 givenname: D.R. surname: Visser fullname: Visser, D.R. organization: School of Natural Sciences, Massey University, New Zealand – sequence: 2 givenname: T.S. orcidid: 0000-0002-0501-5522 surname: Loo fullname: Loo, T.S. organization: School of Natural Sciences, Massey University, New Zealand – sequence: 3 givenname: G.E orcidid: 0000-0001-9231-4389 surname: Norris fullname: Norris, G.E email: g.norris@massey.ac.nz organization: School of Natural Sciences, Massey University, New Zealand – sequence: 4 givenname: David A.D. surname: Parry fullname: Parry, David A.D. email: D.Parry@massey.ac.nz organization: School of Natural Sciences, Massey University, New Zealand |
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Keywords | Fibrillogenesis Glycosylation Collagen type I Mass spectrometry Periodicity |
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References | Hulmes, Miller, Parry, Woodhead-Galloway (b0105) 1977; 77 Terajima, Taga, Sricholpech, Kayashima, Sumida, Maeda, Hattori, Yamauchi (b0260) 2019; 58 Gkogkolou, Bohm (b0065) 2012; 4 Sricholpech, Perdivara, Yokoyama, Nagaoka, Terajima, Tomer, Yamauchi (b0230) 2012; 287 Torre-Blanco, Adachi, Romanic, Prockop (b0270) 1992; 267 3397. doi.org/10.1038/s41598-020-60250-9. Naffa (b0170) 2017 Russell, Fallas, Hartgerink (b0200) 2010; 132 Fratzl, P., 2008. Collagen: structure and mechanics, an introduction Fratzl, P., (Ed), Springer US, Boston MA. pp 1-13. Taga, Kusubata, Ogawa-Goto, Hattori (b0235) 2012; 11 Miller, E.J., 1984. Chemistry of the collagens and their distribution, in: Extracellular matrix biochemistry, K. A. Piez, Reddi, A.H., (Ed.), Elsevier, New York NY. pp 41-82. Makareeva, Han, Vera, Sackett, Holmbeck, Phillips, Visse, Nagase, Leikin (b0140) 2010; 70 Gurry, Nerenberg, Stultz (b0075) 2010; 98 Roberts-Pilgrim, Makareeva, Myles, Besch-Williford, Brodeur, Walker, Leikin, Franklin, Phillips (b0190) 2011; 104 Theocharis, Manou, Karamanos (b0265) 2019; 286 Sorushanova, Delgado, Wu, Shologu, Kshirsagar, Raghunath, Mullen, Bayon, Pandit, Raghunath, Zeugolis (b0220) 2019; 31 Morozova, Muthukumar (b0160) 2018; 149 Batge, Winter, Notbohm, Acil, Brinckmann, Muller (b0020) 1997; 122 482. https://doi.org/10.1038/s42003-021-01982-w. Guo, HF., Bota-Rabassedas, N., Terajima, M. Laemmli (b0125) 1970; 227 Leikina, Mertts, Kuznetsova, Leikin (b0130) 2002; 99 De Caro, Terzi, Fusaro, Altamura, Boccafoschi, Bunk, Giannini (b0040) 2021; 8 Rodriguez-Pascual, Slatter (b0195) 2016; 6 Sweeney, Orgel, Fertala, McAuliffe, Turner, Di Lullo, Chen, Antipova, Perumal, Ala-Kokko, Forlino, Cabral, Barnes, Marini, San Antonio (bib311) 2008; 283 Valtavaara, Szpirer, Szpirer, Myllyla (b0295) 1998; 273 Terajima, Taga, Chen, Cabral, Hou-Fu, Srisawasdi, Nagasawa, Sumida, Hattori, Kurie, Marini, Yamauchi (b0255) 2016; 291 Hulgan, Hartgerink (b0095) 2022; 23 Ishikawa, Taga, Zientek, Mizuno, Salo, Semenova, Tufa, Keene, Holden, Mizuno, Gould, Myllyharju, Bachinger (b0110) 2021; 296 Song, Mechref (b0215) 2013; 12 Uitto (b0280) 1979; 192 Cummings (b0035) 2009; 5 Pornprasertsuk, Duarte, Mochida, Yamauchi (b0185) 2004; 19 Malfait, Symoens, Coucke, Nunes, De Almeida, De Paepe (b0145) 2006; 43 Sievers, Wilm, Dineen, Gibson, Karplus, Li, Lopez, McWilliam, Remmert, Soding, Thompson, Higgins (b0210) 2011; 7 Myllyharju, Kivirikko (b0165) 2004; 20 Valtavaara, Papponen, Pirttila, Hiltunen, Helander, Myllyla (b0290) 1997; 272 Yeowell, Walker (b0305) 1999; 18 Uzawa, Grzesik, Nishiura, Kuznetsov, Robey, Brenner, Yamauchi (b0285) 1999; 14 Eyre, Glimcher (b0045) 1973; 52 Hill, Wither, Nemkov, Barrett, D'Alessandro, Dzieciatkowska, Hansen (b0085) 2015; 14 Yang, Park, Davis, Russell, Kim, Brand, Lawrence, Ge, Westphall, Coon, Greenspan (b0300) 2012; 287 Rodriguez, L.B. Gibbons, D.L., Chen, Y., Banerjee, P., Tsai, C-L., Tan, X., Liu, X., YuJ., Tokmina-Roszyk. M., Stawikowska, M., Fields, G.B., Miller, M.D., Wang, X., Lee, J., Dalby, K.N., Creighton, C.J., Phillips Jr. G.N., Tainer, J.A., Yamauchi, M., Kurie, J.M., 2021. A collagen glucosyltransferase drives lung adenocarcinoma progression in mice. Commun Biol Luther, Hulsmeier, Schegg, Deuber, Raoult, Hennet (b0135) 2011; 286 Gardelli, C., Russo, L., Cipolla, L., Moro, M., Andriani, F. rondinone, O., Nicotra, F., Sozzi, G., Bertolini, G., Roz, L., 2021. Cancer Sci 112, 217-230. Hennet (b0080) 2019; 56 Zhang, Yu, Song, Li, Mechref, Tang, Liu (b0310) 2015; 14 Ju, Liu, Zhang, Liu, Yang (b0120) 2020; 13 Bansode, S., Bashtanova, U., Li, R., Clark, J., Muller, K.H., Puszkarska, A., Goldberga, I., Chetwood. H.H., Reid, D.G., Colwell, L.J. skepper, J.N., Shanahan, C.M., Schitter, G., Mesquida, P. Duer, M,J., 2020. Glycation changes molecular organization and charge distribution in type I collagen fibrils. Covington, Wise (b0030) 2020 Cabral, Perdivara, Weis, Terajima, Blissett, Chang, Perosky, Makareeva, Mertz, Leikin, Tomer, Kozloff, Eyre, Yamauchi, Marini (b0025) 2014; 10 Terajima, Perdivara, Sricholpech, Deguchi, Pleshko, Tomer, Yamauchi (b0250) 2014; 289 Hudson, Archer, King, Eyre (b0090) 2018; 293 Eyre, Weis, Rai (b0050) 2019; 294 Jimenez, Bashey, Benditt, Yankowski (b0115) 1977; 78 Sharma, Carrique, Vadon-Le Goff, Mariano, Georges, Delolme, Koivunen, Myllyharju, Moali, Aghajari, Hulmes (b0205) 2017; 8 Hulmes, Miller, Parry, Piez, Woodhead-Galloway (b0100) 1973; 79 Notbohm, Nokelainen, Myllyharju, Fietzek, Muller, Kivirikko (b0175) 1999; 274 Basak, Vega-Montoto, Zimmerman, Tabb, Hudson, Vanacore (b0015) 2016; 15 Tang, Wang, Gandhi, Foley, Burrage, Woods, Gu (b0245) 2020; 30 Merl-Pham, Basak, Knuppel, Ramanujam, Athanason, Behr, Engelhardt, Eickelberg, Hauck, Vanacore, Staab-Weijnitz (b0150) 2019; 1 Amudeswari, Liang, Chakrabarti (b0005) 1987; 7 Pace, Wiese, Drenguis, Kuznetsova, Leikin, Schwarze, Chen, Mooney, Unger, Byers (b0180) 2008; 283 Sricholpech, Perdivara, Nagaoka, Yokoyama, Tomer, Yamauchi (b0225) 2011; 286 Taga, Kusubata, Ogawa-Goto, Hattori (b0240) 2013; 12 Torre-Blanco, Adachi, Hojima, Wootton, Minor, Prockop (b0275) 1992; 267 Russell (10.1016/j.jsb.2023.107938_b0200) 2010; 132 De Caro (10.1016/j.jsb.2023.107938_b0040) 2021; 8 Myllyharju (10.1016/j.jsb.2023.107938_b0165) 2004; 20 Jimenez (10.1016/j.jsb.2023.107938_b0115) 1977; 78 Rodriguez-Pascual (10.1016/j.jsb.2023.107938_b0195) 2016; 6 Uitto (10.1016/j.jsb.2023.107938_b0280) 1979; 192 10.1016/j.jsb.2023.107938_b0010 10.1016/j.jsb.2023.107938_b0055 10.1016/j.jsb.2023.107938_b0060 Naffa (10.1016/j.jsb.2023.107938_b0170) 2017 Ishikawa (10.1016/j.jsb.2023.107938_b0110) 2021; 296 Hulgan (10.1016/j.jsb.2023.107938_b0095) 2022; 23 Amudeswari (10.1016/j.jsb.2023.107938_b0005) 1987; 7 Sorushanova (10.1016/j.jsb.2023.107938_b0220) 2019; 31 Merl-Pham (10.1016/j.jsb.2023.107938_b0150) 2019; 1 Torre-Blanco (10.1016/j.jsb.2023.107938_b0270) 1992; 267 Hill (10.1016/j.jsb.2023.107938_b0085) 2015; 14 Morozova (10.1016/j.jsb.2023.107938_b0160) 2018; 149 Yeowell (10.1016/j.jsb.2023.107938_b0305) 1999; 18 Yang (10.1016/j.jsb.2023.107938_b0300) 2012; 287 Cabral (10.1016/j.jsb.2023.107938_b0025) 2014; 10 Cummings (10.1016/j.jsb.2023.107938_b0035) 2009; 5 Valtavaara (10.1016/j.jsb.2023.107938_b0295) 1998; 273 Gurry (10.1016/j.jsb.2023.107938_b0075) 2010; 98 Hudson (10.1016/j.jsb.2023.107938_b0090) 2018; 293 Batge (10.1016/j.jsb.2023.107938_b0020) 1997; 122 Malfait (10.1016/j.jsb.2023.107938_b0145) 2006; 43 Zhang (10.1016/j.jsb.2023.107938_b0310) 2015; 14 Basak (10.1016/j.jsb.2023.107938_b0015) 2016; 15 Leikina (10.1016/j.jsb.2023.107938_b0130) 2002; 99 Terajima (10.1016/j.jsb.2023.107938_b0260) 2019; 58 Taga (10.1016/j.jsb.2023.107938_b0240) 2013; 12 Sricholpech (10.1016/j.jsb.2023.107938_b0225) 2011; 286 Roberts-Pilgrim (10.1016/j.jsb.2023.107938_b0190) 2011; 104 Hennet (10.1016/j.jsb.2023.107938_b0080) 2019; 56 Song (10.1016/j.jsb.2023.107938_b0215) 2013; 12 Theocharis (10.1016/j.jsb.2023.107938_b0265) 2019; 286 Terajima (10.1016/j.jsb.2023.107938_b0250) 2014; 289 Covington (10.1016/j.jsb.2023.107938_b0030) 2020 Eyre (10.1016/j.jsb.2023.107938_b0045) 1973; 52 Uzawa (10.1016/j.jsb.2023.107938_b0285) 1999; 14 Hulmes (10.1016/j.jsb.2023.107938_b0105) 1977; 77 10.1016/j.jsb.2023.107938_b0155 Eyre (10.1016/j.jsb.2023.107938_b0050) 2019; 294 Hulmes (10.1016/j.jsb.2023.107938_b0100) 1973; 79 Tang (10.1016/j.jsb.2023.107938_b0245) 2020; 30 Gkogkolou (10.1016/j.jsb.2023.107938_b0065) 2012; 4 Pornprasertsuk (10.1016/j.jsb.2023.107938_b0185) 2004; 19 Laemmli (10.1016/j.jsb.2023.107938_b0125) 1970; 227 Sweeney (10.1016/j.jsb.2023.107938_bib311) 2008; 283 Makareeva (10.1016/j.jsb.2023.107938_b0140) 2010; 70 Valtavaara (10.1016/j.jsb.2023.107938_b0290) 1997; 272 Luther (10.1016/j.jsb.2023.107938_b0135) 2011; 286 Sievers (10.1016/j.jsb.2023.107938_b0210) 2011; 7 Notbohm (10.1016/j.jsb.2023.107938_b0175) 1999; 274 Pace (10.1016/j.jsb.2023.107938_b0180) 2008; 283 10.1016/j.jsb.2023.107938_b0070 Sharma (10.1016/j.jsb.2023.107938_b0205) 2017; 8 Taga (10.1016/j.jsb.2023.107938_b0235) 2012; 11 Terajima (10.1016/j.jsb.2023.107938_b0255) 2016; 291 Torre-Blanco (10.1016/j.jsb.2023.107938_b0275) 1992; 267 Ju (10.1016/j.jsb.2023.107938_b0120) 2020; 13 Sricholpech (10.1016/j.jsb.2023.107938_b0230) 2012; 287 |
References_xml | – volume: 43 start-page: e36 year: 2006 ident: b0145 article-title: Total absence of the alpha2(I) chain of collagen type I causes a rare form of Ehlers-Danlos syndrome with hypermobility and propensity to cardiac valvular problems publication-title: J Med Genet contributor: fullname: De Paepe – volume: 8 start-page: 1024 year: 2021 end-page: 1034 ident: b0040 article-title: Time scale of glycation in collagen of bovine pericardium-derived bio-tissues publication-title: IUCrJ contributor: fullname: Giannini – volume: 14 start-page: 1946 year: 2015 end-page: 1958 ident: b0085 article-title: Preserved Proteins from Extinct Bison latifrons Identified by Tandem Mass Spectrometry; Hydroxylysine Glycosides are a Common Feature of Ancient Collagen publication-title: Mol Cell Proteomics contributor: fullname: Hansen – volume: 30 start-page: 830 year: 2020 end-page: 843 ident: b0245 article-title: Effect of hydroxylysine-O-glycosylation on the structure of type I collagen molecule: A computational study publication-title: Glycobiology contributor: fullname: Gu – volume: 1 year: 2019 ident: b0150 article-title: Quantitative proteomic profiling of extracellular matrix and site-specific collagen post-translational modifications in an in vitro model of lung fibrosis publication-title: Matrix Biol Plus contributor: fullname: Staab-Weijnitz – year: 2017 ident: b0170 article-title: Understanding the molecular basis of the strength differences in skins used in leather manufacture, (Doctoral Dissertation) Massey University contributor: fullname: Naffa – volume: 294 start-page: 6578 year: 2019 end-page: 6590 ident: b0050 article-title: Analyses of lysine aldehyde cross-linking in collagen reveal that the mature cross-link histidinohydroxylysinonorleucine is an artifact publication-title: J Biol Chem contributor: fullname: Rai – volume: 132 start-page: 3242 year: 2010 end-page: 3243 ident: b0200 article-title: Selective assembly of a high stability AAB collagen heterotrimer publication-title: J Am Chem Soc contributor: fullname: Hartgerink – volume: 149 year: 2018 ident: b0160 article-title: Electrostatic effects in collagen fibril formation publication-title: J Chem Phys contributor: fullname: Muthukumar – volume: 267 start-page: 4968 year: 1992 end-page: 4973 ident: b0270 article-title: Copolymerization of normal type I collagen with three mutated type I collagens containing substitutions of cysteine at different glycine positions in the alpha 1 (I) chain publication-title: J Biol Chem contributor: fullname: Prockop – volume: 15 start-page: 245 year: 2016 end-page: 258 ident: b0015 article-title: Comprehensive Characterization of Glycosylation and Hydroxylation of Basement Membrane Collagen IV by High-Resolution Mass Spectrometry publication-title: J Proteome Res contributor: fullname: Vanacore – volume: 10 start-page: e1004465 year: 2014 ident: b0025 article-title: Abnormal type I collagen post-translational modification and crosslinking in a cyclophilin B KO mouse model of recessive osteogenesis imperfecta publication-title: PLoS Genet contributor: fullname: Marini – volume: 289 start-page: 22636 year: 2014 end-page: 22647 ident: b0250 article-title: Glycosylation and cross-linking in bone type I collagen publication-title: J Biol Chem contributor: fullname: Yamauchi – volume: 6 start-page: 37374 year: 2016 ident: b0195 article-title: Collagen cross-linking: insights on the evolution of metazoan extracellular matrix publication-title: Sci Rep contributor: fullname: Slatter – volume: 23 start-page: 1475 year: 2022 end-page: 1489 ident: b0095 article-title: Recent Advances in Collagen Mimetic Peptide Structure and Design publication-title: Biomacromolecules contributor: fullname: Hartgerink – volume: 286 start-page: 43701 year: 2011 end-page: 43709 ident: b0135 article-title: Mimivirus collagen is modified by bifunctional lysyl hydroxylase and glycosyltransferase enzyme publication-title: J Biol Chem contributor: fullname: Hennet – volume: 291 start-page: 9501 year: 2016 end-page: 9512 ident: b0255 article-title: Cyclophilin-B Modulates Collagen Cross-linking by Differentially Affecting Lysine Hydroxylation in the Helical and Telopeptidyl Domains of Tendon Type I Collagen publication-title: J Biol Chem contributor: fullname: Yamauchi – volume: 296 year: 2021 ident: b0110 article-title: Type I and type V procollagen triple helix uses different subsets of the molecular ensemble for lysine posttranslational modifications in the rER publication-title: J Biol Chem contributor: fullname: Bachinger – volume: 8 start-page: 14671 year: 2017 ident: b0205 article-title: Structural basis of homo- and heterotrimerization of collagen I publication-title: Nat Commun contributor: fullname: Hulmes – volume: 192 start-page: 371 year: 1979 end-page: 379 ident: b0280 article-title: Collagen polymorphism: isolation and partial characterization of alpha 1(I)-trimer molecules in normal human skin publication-title: Arch Biochem Biophys contributor: fullname: Uitto – volume: 98 start-page: 2634 year: 2010 end-page: 2643 ident: b0075 article-title: The contribution of interchain salt bridges to triple-helical stability in collagen publication-title: Biophys J contributor: fullname: Stultz – volume: 56 start-page: 131 year: 2019 end-page: 138 ident: b0080 article-title: Collagen glycosylation publication-title: Curr Opin Struct Biol contributor: fullname: Hennet – volume: 78 start-page: 1354 year: 1977 end-page: 1361 ident: b0115 article-title: Identification of collagen alpha1(I) trimer in embryonic chick tendons and calvaria publication-title: Biochem Biophys Res Commun contributor: fullname: Yankowski – volume: 20 start-page: 33 year: 2004 end-page: 43 ident: b0165 article-title: Collagens, modifying enzymes and their mutations in humans, flies and worms publication-title: Trends Genet contributor: fullname: Kivirikko – volume: 286 start-page: 8846 year: 2011 end-page: 8856 ident: b0225 article-title: Lysyl hydroxylase 3 glucosylates galactosylhydroxylysine residues in type I collagen in osteoblast culture publication-title: J Biol Chem contributor: fullname: Yamauchi – volume: 293 start-page: 15620 year: 2018 end-page: 15627 ident: b0090 article-title: Glycation of type I collagen selectively targets the same helical domain lysine sites as lysyl oxidase-mediated cross-linking publication-title: J Biol Chem contributor: fullname: Eyre – volume: 99 start-page: 1314 year: 2002 end-page: 1318 ident: b0130 article-title: Type I collagen is thermally unstable at body temperature publication-title: Proc Natl Acad Sci U S A contributor: fullname: Leikin – volume: 272 start-page: 6831 year: 1997 end-page: 6834 ident: b0290 article-title: Cloning and characterization of a novel human lysyl hydroxylase isoform highly expressed in pancreas and muscle publication-title: J Biol Chem contributor: fullname: Myllyla – volume: 12 start-page: 2225 year: 2013 end-page: 2232 ident: b0240 article-title: Site-specific quantitative analysis of overglycosylation of collagen in osteogenesis imperfecta using hydrazide chemistry and SILAC publication-title: J Proteome Res contributor: fullname: Hattori – volume: 287 start-page: 22998 year: 2012 end-page: 23009 ident: b0230 article-title: Lysyl hydroxylase 3-mediated glucosylation in type I collagen: molecular loci and biological significance publication-title: J Biol Chem contributor: fullname: Yamauchi – volume: 104 start-page: 373 year: 2011 end-page: 382 ident: b0190 article-title: Deficient degradation of homotrimeric type I collagen, alpha1(I)3 glomerulopathy in oim mice publication-title: Mol Genet Metab contributor: fullname: Phillips – volume: 287 start-page: 40598 year: 2012 end-page: 40610 ident: b0300 article-title: Comprehensive mass spectrometric mapping of the hydroxylated amino acid residues of the alpha1(V) collagen chain publication-title: J Biol Chem contributor: fullname: Greenspan – volume: 18 start-page: 179 year: 1999 end-page: 187 ident: b0305 article-title: Tissue specificity of a new splice form of the human lysyl hydroxylase 2 gene publication-title: Matrix Biol contributor: fullname: Walker – volume: 4 start-page: 259 year: 2012 end-page: 270 ident: b0065 article-title: Advanced glycation end products: Key players in skin aging? publication-title: Dermatoendocrinol contributor: fullname: Bohm – volume: 273 start-page: 12881 year: 1998 end-page: 12886 ident: b0295 article-title: Primary structure, tissue distribution, and chromosomal localization of a novel isoform of lysyl hydroxylase (lysyl hydroxylase 3) publication-title: J Biol Chem contributor: fullname: Myllyla – volume: 13 start-page: 358 year: 2020 ident: b0120 article-title: Comparison of the Structural Characteristics of Native Collagen Fibrils Derived from Bovine Tendons Using Two Different Methods: Modified Acid-Solubilized and Pepsin-Aided Extraction publication-title: Materials contributor: fullname: Yang – volume: 31 start-page: e1801651 year: 2019 ident: b0220 article-title: The Collagen Suprafamily: From Biosynthesis to Advanced Biomaterial Development publication-title: Adv Mater contributor: fullname: Zeugolis – volume: 58 start-page: 5040 year: 2019 end-page: 5051 ident: b0260 article-title: Role of Glycosyltransferase 25 Domain 1 in Type I Collagen Glycosylation and Molecular Phenotypes publication-title: Biochemistry contributor: fullname: Yamauchi – volume: 7 start-page: 215 year: 1987 end-page: 223 ident: b0005 article-title: Polar-apolar characteristics and fibrillogenesis of glycosylated collagen publication-title: Coll Relat Res contributor: fullname: Chakrabarti – volume: 227 start-page: 680 year: 1970 end-page: 685 ident: b0125 article-title: Cleavage of structural proteins during the assembly of the head of bacteriophage T4 publication-title: Nature contributor: fullname: Laemmli – volume: 14 start-page: 1272 year: 1999 end-page: 1280 ident: b0285 article-title: Differential expression of human lysyl hydroxylase genes, lysine hydroxylation, and cross-linking of type I collagen during osteoblastic differentiation in vitro publication-title: J Bone Miner Res contributor: fullname: Yamauchi – volume: 70 start-page: 4366 year: 2010 end-page: 4374 ident: b0140 article-title: Carcinomas contain a matrix metalloproteinase-resistant isoform of type I collagen exerting selective support to invasion publication-title: Cancer Res contributor: fullname: Leikin – volume: 283 start-page: 16061 year: 2008 end-page: 16067 ident: b0180 article-title: Defective C-propeptides of the proalpha2(I) chain of type I procollagen impede molecular assembly and result in osteogenesis imperfecta publication-title: J Biol Chem contributor: fullname: Byers – year: 2020 ident: b0030 article-title: The Science of Leather contributor: fullname: Wise – volume: 122 start-page: 109 year: 1997 end-page: 115 ident: b0020 article-title: Glycosylation of human bone collagen I in relation to lysylhydroxylation and fibril diameter publication-title: J Biochem contributor: fullname: Muller – volume: 267 start-page: 2650 year: 1992 end-page: 2655 ident: b0275 article-title: Temperature-induced post-translational over-modification of type I procollagen. Effects of over-modification of the protein on the rate of cleavage by procollagen N-proteinase and on self-assembly of collagen into fibrils publication-title: J Biol Chem contributor: fullname: Prockop – volume: 11 year: 2012 ident: b0235 article-title: Development of a novel method for analyzing collagen O-glycosylations by hydrazide chemistry publication-title: Mol Cell Proteomics contributor: fullname: Hattori – volume: 14 start-page: 5099 year: 2015 end-page: 5108 ident: b0310 article-title: Identification of Glycopeptides with Multiple Hydroxylysine O-Glycosylation Sites by Tandem Mass Spectrometry publication-title: J Proteome Res contributor: fullname: Liu – volume: 7 start-page: 539 year: 2011 ident: b0210 article-title: Fast, scalable generation of high-quality protein multiple sequence alignments using Clustal Omega publication-title: Mol Syst Biol contributor: fullname: Higgins – volume: 12 start-page: 3599 year: 2013 end-page: 3609 ident: b0215 article-title: LC-MS/MS identification of the O-glycosylation and hydroxylation of amino acid residues of collagen alpha-1 (II) chain from bovine cartilage publication-title: J Proteome Res contributor: fullname: Mechref – volume: 5 start-page: 1087 year: 2009 end-page: 1104 ident: b0035 article-title: The repertoire of glycan determinants in the human glycome publication-title: Mol Biosyst contributor: fullname: Cummings – volume: 19 start-page: 1349 year: 2004 end-page: 1355 ident: b0185 article-title: Lysyl hydroxylase-2b directs collagen cross-linking pathways in MC3T3-E1 cells publication-title: J Bone Miner Res contributor: fullname: Yamauchi – volume: 79 start-page: 137 year: 1973 end-page: 148 ident: b0100 article-title: Analysis of the primary structure of collagen for the origins of molecular packing publication-title: J Mol Biol contributor: fullname: Woodhead-Galloway – volume: 274 start-page: 8988 year: 1999 end-page: 8992 ident: b0175 article-title: Recombinant human type II collagens with low and high levels of hydroxylysine and its glycosylated forms show marked differences in fibrillogenesis in vitro publication-title: J Biol Chem contributor: fullname: Kivirikko – volume: 286 start-page: 2830 year: 2019 end-page: 2869 ident: b0265 article-title: The extracellular matrix as a multitasking player in disease publication-title: FEBS J contributor: fullname: Karamanos – volume: 52 start-page: 663 year: 1973 end-page: 671 ident: b0045 article-title: Analysis of a crosslinked peptide from calf bone collagen: evidence that hydroxylysyl glycoside participates in the crosslink publication-title: Biochem Biophys Res Commun contributor: fullname: Glimcher – volume: 283 start-page: 21187 year: 2008 end-page: 21197 ident: bib311 article-title: Candidate cell and matrix interaction domains on the collagen fibril, the predominant protein of vertebrates publication-title: J Biol Chem contributor: fullname: San Antonio – volume: 77 start-page: 574 year: 1977 end-page: 580 ident: b0105 article-title: Fundamental periodicities in the amino acid sequence of the collagen alpha1 chain publication-title: Biochem Biophys Res Commun contributor: fullname: Woodhead-Galloway – volume: 12 start-page: 2225 year: 2013 ident: 10.1016/j.jsb.2023.107938_b0240 article-title: Site-specific quantitative analysis of overglycosylation of collagen in osteogenesis imperfecta using hydrazide chemistry and SILAC publication-title: J Proteome Res doi: 10.1021/pr400079d contributor: fullname: Taga – volume: 70 start-page: 4366 year: 2010 ident: 10.1016/j.jsb.2023.107938_b0140 article-title: Carcinomas contain a matrix metalloproteinase-resistant isoform of type I collagen exerting selective support to invasion publication-title: Cancer Res doi: 10.1158/0008-5472.CAN-09-4057 contributor: fullname: Makareeva – volume: 267 start-page: 4968 year: 1992 ident: 10.1016/j.jsb.2023.107938_b0270 article-title: Copolymerization of normal type I collagen with three mutated type I collagens containing substitutions of cysteine at different glycine positions in the alpha 1 (I) chain publication-title: J Biol Chem doi: 10.1016/S0021-9258(18)42925-0 contributor: fullname: Torre-Blanco – volume: 283 start-page: 21187 year: 2008 ident: 10.1016/j.jsb.2023.107938_bib311 article-title: Candidate cell and matrix interaction domains on the collagen fibril, the predominant protein of vertebrates publication-title: J Biol Chem doi: 10.1074/jbc.M709319200 contributor: fullname: Sweeney – volume: 291 start-page: 9501 year: 2016 ident: 10.1016/j.jsb.2023.107938_b0255 article-title: Cyclophilin-B Modulates Collagen Cross-linking by Differentially Affecting Lysine Hydroxylation in the Helical and Telopeptidyl Domains of Tendon Type I Collagen publication-title: J Biol Chem doi: 10.1074/jbc.M115.699470 contributor: fullname: Terajima – volume: 1 year: 2019 ident: 10.1016/j.jsb.2023.107938_b0150 article-title: Quantitative proteomic profiling of extracellular matrix and site-specific collagen post-translational modifications in an in vitro model of lung fibrosis publication-title: Matrix Biol Plus doi: 10.1016/j.mbplus.2019.04.002 contributor: fullname: Merl-Pham – year: 2020 ident: 10.1016/j.jsb.2023.107938_b0030 contributor: fullname: Covington – volume: 8 start-page: 14671 year: 2017 ident: 10.1016/j.jsb.2023.107938_b0205 article-title: Structural basis of homo- and heterotrimerization of collagen I publication-title: Nat Commun doi: 10.1038/ncomms14671 contributor: fullname: Sharma – volume: 4 start-page: 259 year: 2012 ident: 10.1016/j.jsb.2023.107938_b0065 article-title: Advanced glycation end products: Key players in skin aging? publication-title: Dermatoendocrinol doi: 10.4161/derm.22028 contributor: fullname: Gkogkolou – ident: 10.1016/j.jsb.2023.107938_b0010 doi: 10.1038/s41598-020-60250-9 – volume: 58 start-page: 5040 year: 2019 ident: 10.1016/j.jsb.2023.107938_b0260 article-title: Role of Glycosyltransferase 25 Domain 1 in Type I Collagen Glycosylation and Molecular Phenotypes publication-title: Biochemistry doi: 10.1021/acs.biochem.8b00984 contributor: fullname: Terajima – volume: 52 start-page: 663 year: 1973 ident: 10.1016/j.jsb.2023.107938_b0045 article-title: Analysis of a crosslinked peptide from calf bone collagen: evidence that hydroxylysyl glycoside participates in the crosslink publication-title: Biochem Biophys Res Commun doi: 10.1016/0006-291X(73)90764-X contributor: fullname: Eyre – ident: 10.1016/j.jsb.2023.107938_b0055 doi: 10.1007/978-0-387-73906-9_1 – ident: 10.1016/j.jsb.2023.107938_b0060 doi: 10.1111/cas.14700 – volume: 14 start-page: 1946 year: 2015 ident: 10.1016/j.jsb.2023.107938_b0085 article-title: Preserved Proteins from Extinct Bison latifrons Identified by Tandem Mass Spectrometry; Hydroxylysine Glycosides are a Common Feature of Ancient Collagen publication-title: Mol Cell Proteomics doi: 10.1074/mcp.M114.047787 contributor: fullname: Hill – year: 2017 ident: 10.1016/j.jsb.2023.107938_b0170 contributor: fullname: Naffa – volume: 7 start-page: 539 year: 2011 ident: 10.1016/j.jsb.2023.107938_b0210 article-title: Fast, scalable generation of high-quality protein multiple sequence alignments using Clustal Omega publication-title: Mol Syst Biol doi: 10.1038/msb.2011.75 contributor: fullname: Sievers – volume: 19 start-page: 1349 year: 2004 ident: 10.1016/j.jsb.2023.107938_b0185 article-title: Lysyl hydroxylase-2b directs collagen cross-linking pathways in MC3T3-E1 cells publication-title: J Bone Miner Res doi: 10.1359/JBMR.040323 contributor: fullname: Pornprasertsuk – volume: 274 start-page: 8988 year: 1999 ident: 10.1016/j.jsb.2023.107938_b0175 article-title: Recombinant human type II collagens with low and high levels of hydroxylysine and its glycosylated forms show marked differences in fibrillogenesis in vitro publication-title: J Biol Chem doi: 10.1074/jbc.274.13.8988 contributor: fullname: Notbohm – volume: 286 start-page: 43701 year: 2011 ident: 10.1016/j.jsb.2023.107938_b0135 article-title: Mimivirus collagen is modified by bifunctional lysyl hydroxylase and glycosyltransferase enzyme publication-title: J Biol Chem doi: 10.1074/jbc.M111.309096 contributor: fullname: Luther – volume: 30 start-page: 830 year: 2020 ident: 10.1016/j.jsb.2023.107938_b0245 article-title: Effect of hydroxylysine-O-glycosylation on the structure of type I collagen molecule: A computational study publication-title: Glycobiology doi: 10.1093/glycob/cwaa026 contributor: fullname: Tang – volume: 149 year: 2018 ident: 10.1016/j.jsb.2023.107938_b0160 article-title: Electrostatic effects in collagen fibril formation publication-title: J Chem Phys doi: 10.1063/1.5036526 contributor: fullname: Morozova – volume: 104 start-page: 373 year: 2011 ident: 10.1016/j.jsb.2023.107938_b0190 article-title: Deficient degradation of homotrimeric type I collagen, alpha1(I)3 glomerulopathy in oim mice publication-title: Mol Genet Metab doi: 10.1016/j.ymgme.2011.07.025 contributor: fullname: Roberts-Pilgrim – volume: 8 start-page: 1024 year: 2021 ident: 10.1016/j.jsb.2023.107938_b0040 article-title: Time scale of glycation in collagen of bovine pericardium-derived bio-tissues publication-title: IUCrJ doi: 10.1107/S2052252521010344 contributor: fullname: De Caro – volume: 99 start-page: 1314 year: 2002 ident: 10.1016/j.jsb.2023.107938_b0130 article-title: Type I collagen is thermally unstable at body temperature publication-title: Proc Natl Acad Sci U S A doi: 10.1073/pnas.032307099 contributor: fullname: Leikina – volume: 293 start-page: 15620 year: 2018 ident: 10.1016/j.jsb.2023.107938_b0090 article-title: Glycation of type I collagen selectively targets the same helical domain lysine sites as lysyl oxidase-mediated cross-linking publication-title: J Biol Chem doi: 10.1074/jbc.RA118.004829 contributor: fullname: Hudson – volume: 6 start-page: 37374 year: 2016 ident: 10.1016/j.jsb.2023.107938_b0195 article-title: Collagen cross-linking: insights on the evolution of metazoan extracellular matrix publication-title: Sci Rep doi: 10.1038/srep37374 contributor: fullname: Rodriguez-Pascual – volume: 132 start-page: 3242 year: 2010 ident: 10.1016/j.jsb.2023.107938_b0200 article-title: Selective assembly of a high stability AAB collagen heterotrimer publication-title: J Am Chem Soc doi: 10.1021/ja909720g contributor: fullname: Russell – volume: 43 start-page: e36 year: 2006 ident: 10.1016/j.jsb.2023.107938_b0145 article-title: Total absence of the alpha2(I) chain of collagen type I causes a rare form of Ehlers-Danlos syndrome with hypermobility and propensity to cardiac valvular problems publication-title: J Med Genet doi: 10.1136/jmg.2005.038224 contributor: fullname: Malfait – volume: 287 start-page: 22998 year: 2012 ident: 10.1016/j.jsb.2023.107938_b0230 article-title: Lysyl hydroxylase 3-mediated glucosylation in type I collagen: molecular loci and biological significance publication-title: J Biol Chem doi: 10.1074/jbc.M112.343954 contributor: fullname: Sricholpech – volume: 77 start-page: 574 year: 1977 ident: 10.1016/j.jsb.2023.107938_b0105 article-title: Fundamental periodicities in the amino acid sequence of the collagen alpha1 chain publication-title: Biochem Biophys Res Commun doi: 10.1016/S0006-291X(77)80017-X contributor: fullname: Hulmes – volume: 287 start-page: 40598 year: 2012 ident: 10.1016/j.jsb.2023.107938_b0300 article-title: Comprehensive mass spectrometric mapping of the hydroxylated amino acid residues of the alpha1(V) collagen chain publication-title: J Biol Chem doi: 10.1074/jbc.M112.406850 contributor: fullname: Yang – volume: 12 start-page: 3599 year: 2013 ident: 10.1016/j.jsb.2023.107938_b0215 article-title: LC-MS/MS identification of the O-glycosylation and hydroxylation of amino acid residues of collagen alpha-1 (II) chain from bovine cartilage publication-title: J Proteome Res doi: 10.1021/pr400101t contributor: fullname: Song – volume: 56 start-page: 131 year: 2019 ident: 10.1016/j.jsb.2023.107938_b0080 article-title: Collagen glycosylation publication-title: Curr Opin Struct Biol doi: 10.1016/j.sbi.2019.01.015 contributor: fullname: Hennet – volume: 14 start-page: 1272 year: 1999 ident: 10.1016/j.jsb.2023.107938_b0285 article-title: Differential expression of human lysyl hydroxylase genes, lysine hydroxylation, and cross-linking of type I collagen during osteoblastic differentiation in vitro publication-title: J Bone Miner Res doi: 10.1359/jbmr.1999.14.8.1272 contributor: fullname: Uzawa – volume: 18 start-page: 179 year: 1999 ident: 10.1016/j.jsb.2023.107938_b0305 article-title: Tissue specificity of a new splice form of the human lysyl hydroxylase 2 gene publication-title: Matrix Biol doi: 10.1016/S0945-053X(99)00013-X contributor: fullname: Yeowell – volume: 7 start-page: 215 year: 1987 ident: 10.1016/j.jsb.2023.107938_b0005 article-title: Polar-apolar characteristics and fibrillogenesis of glycosylated collagen publication-title: Coll Relat Res doi: 10.1016/S0174-173X(87)80011-0 contributor: fullname: Amudeswari – volume: 14 start-page: 5099 year: 2015 ident: 10.1016/j.jsb.2023.107938_b0310 article-title: Identification of Glycopeptides with Multiple Hydroxylysine O-Glycosylation Sites by Tandem Mass Spectrometry publication-title: J Proteome Res doi: 10.1021/acs.jproteome.5b00299 contributor: fullname: Zhang – volume: 227 start-page: 680 year: 1970 ident: 10.1016/j.jsb.2023.107938_b0125 article-title: Cleavage of structural proteins during the assembly of the head of bacteriophage T4 publication-title: Nature doi: 10.1038/227680a0 contributor: fullname: Laemmli – volume: 286 start-page: 2830 year: 2019 ident: 10.1016/j.jsb.2023.107938_b0265 article-title: The extracellular matrix as a multitasking player in disease publication-title: FEBS J doi: 10.1111/febs.14818 contributor: fullname: Theocharis – volume: 15 start-page: 245 year: 2016 ident: 10.1016/j.jsb.2023.107938_b0015 article-title: Comprehensive Characterization of Glycosylation and Hydroxylation of Basement Membrane Collagen IV by High-Resolution Mass Spectrometry publication-title: J Proteome Res doi: 10.1021/acs.jproteome.5b00767 contributor: fullname: Basak – volume: 78 start-page: 1354 year: 1977 ident: 10.1016/j.jsb.2023.107938_b0115 article-title: Identification of collagen alpha1(I) trimer in embryonic chick tendons and calvaria publication-title: Biochem Biophys Res Commun doi: 10.1016/0006-291X(77)91441-3 contributor: fullname: Jimenez – volume: 283 start-page: 16061 year: 2008 ident: 10.1016/j.jsb.2023.107938_b0180 article-title: Defective C-propeptides of the proalpha2(I) chain of type I procollagen impede molecular assembly and result in osteogenesis imperfecta publication-title: J Biol Chem doi: 10.1074/jbc.M801982200 contributor: fullname: Pace – volume: 122 start-page: 109 year: 1997 ident: 10.1016/j.jsb.2023.107938_b0020 article-title: Glycosylation of human bone collagen I in relation to lysylhydroxylation and fibril diameter publication-title: J Biochem doi: 10.1093/oxfordjournals.jbchem.a021717 contributor: fullname: Batge – ident: 10.1016/j.jsb.2023.107938_b0070 doi: 10.1038/s42003-021-01982-w – volume: 5 start-page: 1087 year: 2009 ident: 10.1016/j.jsb.2023.107938_b0035 article-title: The repertoire of glycan determinants in the human glycome publication-title: Mol Biosyst doi: 10.1039/b907931a contributor: fullname: Cummings – volume: 10 start-page: e1004465 year: 2014 ident: 10.1016/j.jsb.2023.107938_b0025 article-title: Abnormal type I collagen post-translational modification and crosslinking in a cyclophilin B KO mouse model of recessive osteogenesis imperfecta publication-title: PLoS Genet doi: 10.1371/journal.pgen.1004465 contributor: fullname: Cabral – volume: 267 start-page: 2650 year: 1992 ident: 10.1016/j.jsb.2023.107938_b0275 article-title: Temperature-induced post-translational over-modification of type I procollagen. Effects of over-modification of the protein on the rate of cleavage by procollagen N-proteinase and on self-assembly of collagen into fibrils publication-title: J Biol Chem doi: 10.1016/S0021-9258(18)45930-3 contributor: fullname: Torre-Blanco – volume: 273 start-page: 12881 year: 1998 ident: 10.1016/j.jsb.2023.107938_b0295 article-title: Primary structure, tissue distribution, and chromosomal localization of a novel isoform of lysyl hydroxylase (lysyl hydroxylase 3) publication-title: J Biol Chem doi: 10.1074/jbc.273.21.12881 contributor: fullname: Valtavaara – volume: 286 start-page: 8846 year: 2011 ident: 10.1016/j.jsb.2023.107938_b0225 article-title: Lysyl hydroxylase 3 glucosylates galactosylhydroxylysine residues in type I collagen in osteoblast culture publication-title: J Biol Chem doi: 10.1074/jbc.M110.178509 contributor: fullname: Sricholpech – volume: 31 start-page: e1801651 year: 2019 ident: 10.1016/j.jsb.2023.107938_b0220 article-title: The Collagen Suprafamily: From Biosynthesis to Advanced Biomaterial Development publication-title: Adv Mater doi: 10.1002/adma.201801651 contributor: fullname: Sorushanova – volume: 272 start-page: 6831 year: 1997 ident: 10.1016/j.jsb.2023.107938_b0290 article-title: Cloning and characterization of a novel human lysyl hydroxylase isoform highly expressed in pancreas and muscle publication-title: J Biol Chem doi: 10.1074/jbc.272.11.6831 contributor: fullname: Valtavaara – volume: 296 year: 2021 ident: 10.1016/j.jsb.2023.107938_b0110 article-title: Type I and type V procollagen triple helix uses different subsets of the molecular ensemble for lysine posttranslational modifications in the rER publication-title: J Biol Chem doi: 10.1016/j.jbc.2021.100453 contributor: fullname: Ishikawa – volume: 294 start-page: 6578 year: 2019 ident: 10.1016/j.jsb.2023.107938_b0050 article-title: Analyses of lysine aldehyde cross-linking in collagen reveal that the mature cross-link histidinohydroxylysinonorleucine is an artifact publication-title: J Biol Chem doi: 10.1074/jbc.RA118.007202 contributor: fullname: Eyre – volume: 192 start-page: 371 year: 1979 ident: 10.1016/j.jsb.2023.107938_b0280 article-title: Collagen polymorphism: isolation and partial characterization of alpha 1(I)-trimer molecules in normal human skin publication-title: Arch Biochem Biophys doi: 10.1016/0003-9861(79)90105-X contributor: fullname: Uitto – volume: 23 start-page: 1475 year: 2022 ident: 10.1016/j.jsb.2023.107938_b0095 article-title: Recent Advances in Collagen Mimetic Peptide Structure and Design publication-title: Biomacromolecules doi: 10.1021/acs.biomac.2c00028 contributor: fullname: Hulgan – volume: 98 start-page: 2634 year: 2010 ident: 10.1016/j.jsb.2023.107938_b0075 article-title: The contribution of interchain salt bridges to triple-helical stability in collagen publication-title: Biophys J doi: 10.1016/j.bpj.2010.01.065 contributor: fullname: Gurry – volume: 13 start-page: 358 year: 2020 ident: 10.1016/j.jsb.2023.107938_b0120 article-title: Comparison of the Structural Characteristics of Native Collagen Fibrils Derived from Bovine Tendons Using Two Different Methods: Modified Acid-Solubilized and Pepsin-Aided Extraction publication-title: Materials doi: 10.3390/ma13020358 contributor: fullname: Ju – volume: 20 start-page: 33 year: 2004 ident: 10.1016/j.jsb.2023.107938_b0165 article-title: Collagens, modifying enzymes and their mutations in humans, flies and worms publication-title: Trends Genet doi: 10.1016/j.tig.2003.11.004 contributor: fullname: Myllyharju – volume: 79 start-page: 137 year: 1973 ident: 10.1016/j.jsb.2023.107938_b0100 article-title: Analysis of the primary structure of collagen for the origins of molecular packing publication-title: J Mol Biol doi: 10.1016/0022-2836(73)90275-1 contributor: fullname: Hulmes – volume: 289 start-page: 22636 year: 2014 ident: 10.1016/j.jsb.2023.107938_b0250 article-title: Glycosylation and cross-linking in bone type I collagen publication-title: J Biol Chem doi: 10.1074/jbc.M113.528513 contributor: fullname: Terajima – volume: 11 issue: M111 year: 2012 ident: 10.1016/j.jsb.2023.107938_b0235 article-title: Development of a novel method for analyzing collagen O-glycosylations by hydrazide chemistry publication-title: Mol Cell Proteomics contributor: fullname: Taga – ident: 10.1016/j.jsb.2023.107938_b0155 |
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•Post-translational modifications of collagen from four animals are identified.•Nine new hydroxylysine glycosylation sites identified in... O-Glycosylation of hydroxylysine (Hyl) in collagen occurs at an early stage of biosynthesis before the triple-helix has formed. This simple post-translational... |
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SubjectTerms | Animals Collagen - metabolism Collagen type I Collagen Type I - metabolism Fibrillogenesis Glycosylation Lysine - metabolism Mass spectrometry Periodicity Proteomics |
Title | Potential implications of the glycosylation patterns in collagen α1(I) and α2(I) chains for fibril assembly and growth |
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