Comparative genomic identification and characterization of npcRNA homologs in Proteus vulgaris
Proteus vulgaris is a rod-shaped Gram-negative bacterium known to be the member of Enterobacteriaceae that is able to cause disease in human being. Generally, non-protein-coding RNAs (npcRNAs) do not code for proteins, but they play a vital role in gene regulation at the RNA level including pathogen...
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| Published in | Journal of biosciences Vol. 46; no. 4 |
|---|---|
| Main Authors | , , , , |
| Format | Journal Article |
| Language | English |
| Published |
New Delhi
Springer India
01.12.2021
Springer Nature B.V |
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| Abstract | Proteus vulgaris
is a rod-shaped Gram-negative bacterium known to be the member of Enterobacteriaceae that is able to cause disease in human being. Generally, non-protein-coding RNAs (npcRNAs) do not code for proteins, but they play a vital role in gene regulation at the RNA level including pathogenicity. The present study aims at elucidating homologous npcRNAs from other bacteria in
Proteus vulgaris
. A comparative genomic analysis was carried out to identify npcRNA homolog of other Enterobacteriaceae pathogens in
Proteus vulgaris
. A total of 231 npcRNAs previously reported in
Salmonella typhi
,
Salmonella typhimurium
and
Escherichia coli
were screened using BLASTn tool against
Proteus vulgaris
genome. Interestingly, 33 npcRNAs are homologs to
Proteus vulgaris
. Northern blot analysis of 6 out of 33 npcRNA candidates confirmed their expression and showed that most of them are differentially expressed during lag, exponential and stationary growth phases. This study is the first approach of identification and characterization of npcRNAs in
P. vulgaris
. Hence, this could be a pioneer study to further validate the regulatory functions of these npcRNAs to fill the gaps in understanding of the pathogenicity of
P. vulgaris
. |
|---|---|
| AbstractList | Proteus vulgaris
is a rod-shaped Gram-negative bacterium known to be the member of Enterobacteriaceae that is able to cause disease in human being. Generally, non-protein-coding RNAs (npcRNAs) do not code for proteins, but they play a vital role in gene regulation at the RNA level including pathogenicity. The present study aims at elucidating homologous npcRNAs from other bacteria in
Proteus vulgaris
. A comparative genomic analysis was carried out to identify npcRNA homolog of other Enterobacteriaceae pathogens in
Proteus vulgaris
. A total of 231 npcRNAs previously reported in
Salmonella typhi
,
Salmonella typhimurium
and
Escherichia coli
were screened using BLASTn tool against
Proteus vulgaris
genome. Interestingly, 33 npcRNAs are homologs to
Proteus vulgaris
. Northern blot analysis of 6 out of 33 npcRNA candidates confirmed their expression and showed that most of them are differentially expressed during lag, exponential and stationary growth phases. This study is the first approach of identification and characterization of npcRNAs in
P. vulgaris
. Hence, this could be a pioneer study to further validate the regulatory functions of these npcRNAs to fill the gaps in understanding of the pathogenicity of
P. vulgaris
. Proteus vulgaris is a rod-shaped Gram-negative bacterium known to be the member of Enterobacteriaceae that is able to cause disease in human being. Generally, non-protein-coding RNAs (npcRNAs) do not code for proteins, but they play a vital role in gene regulation at the RNA level including pathogenicity. The present study aims at elucidating homologous npcRNAs from other bacteria in Proteus vulgaris. A comparative genomic analysis was carried out to identify npcRNA homolog of other Enterobacteriaceae pathogens in Proteus vulgaris. A total of 231 npcRNAs previously reported in Salmonella typhi, Salmonella typhimurium and Escherichia coli were screened using BLASTn tool against Proteus vulgaris genome. Interestingly, 33 npcRNAs are homologs to Proteus vulgaris. Northern blot analysis of 6 out of 33 npcRNA candidates confirmed their expression and showed that most of them are differentially expressed during lag, exponential and stationary growth phases. This study is the first approach of identification and characterization of npcRNAs in P. vulgaris. Hence, this could be a pioneer study to further validate the regulatory functions of these npcRNAs to fill the gaps in understanding of the pathogenicity of P. vulgaris. |
| ArticleNumber | 108 |
| Author | Citartan, Marimuthu Sumitha, Samuggam Chinni, Suresh V. Tang, Thean-Hock KishanRaj, SelvaRaju |
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| Keywords | northern blot pathogenicity npcRNA comparative genomic analysis |
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is a rod-shaped Gram-negative bacterium known to be the member of Enterobacteriaceae that is able to cause disease in human being. Generally,... Proteus vulgaris is a rod-shaped Gram-negative bacterium known to be the member of Enterobacteriaceae that is able to cause disease in human being. Generally,... |
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| SubjectTerms | Bacteria Biomedical and Life Sciences Biomedicine Cell Biology E coli Enterobacteriaceae Gene regulation Genomes Genomic analysis Gram-negative bacteria Homology Identification Life Sciences Microbiology Pathogenicity Pathogens Plant Sciences Proteins Proteus vulgaris Salmonella Zoology |
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| Title | Comparative genomic identification and characterization of npcRNA homologs in Proteus vulgaris |
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