Complete genome sequence of camellia virus A, a tentative new member of the genus Waikavirus

A new positive-strand RNA virus genome was discovered in Camellia japonica plants. The complete genome of the virus is 12,570 nt in size, excluding the poly(A) tail, and contains one large open reading frame (ORF1) and two small open reading frames (ORF2, ORF3). ORF1 and ORF2 are homologous to seque...

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Published inArchives of virology Vol. 166; no. 11; pp. 3207 - 3210
Main Authors Liao, Ruiling, Chen, Qingying, Zhang, Song, Cao, Mengji, Zhou, Changyong
Format Journal Article
LanguageEnglish
Published Vienna Springer Vienna 01.11.2021
Springer Nature B.V
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Abstract A new positive-strand RNA virus genome was discovered in Camellia japonica plants. The complete genome of the virus is 12,570 nt in size, excluding the poly(A) tail, and contains one large open reading frame (ORF1) and two small open reading frames (ORF2, ORF3). ORF1 and ORF2 are homologous to sequences of waikaviruses, while ORF3 has no relatives in the databases. ORF1 encodes a putative polyprotein precursor that is putatively processed into eight smaller proteins, as in typical waikaviruses. Comprehensive analysis, including BLAST searches, genome organization and pairwise sequence comparisons, and phylogeny reconstructions, invariably placed the virus with the waikaviruses. Furthermore, due to lower amino acid sequence identity to known waikaviruses than the threshold species demarcation cutoff, this virus may represent a new species in the genus Waikavirus , family Secoviridae , and we have tentatively named it “camellia virus A” (CamVA). Finally, a field survey was conducted to assess the occurrence of CamVA in camellias and its associated symptoms.
AbstractList A new positive-strand RNA virus genome was discovered in Camellia japonica plants. The complete genome of the virus is 12,570 nt in size, excluding the poly(A) tail, and contains one large open reading frame (ORF1) and two small open reading frames (ORF2, ORF3). ORF1 and ORF2 are homologous to sequences of waikaviruses, while ORF3 has no relatives in the databases. ORF1 encodes a putative polyprotein precursor that is putatively processed into eight smaller proteins, as in typical waikaviruses. Comprehensive analysis, including BLAST searches, genome organization and pairwise sequence comparisons, and phylogeny reconstructions, invariably placed the virus with the waikaviruses. Furthermore, due to lower amino acid sequence identity to known waikaviruses than the threshold species demarcation cutoff, this virus may represent a new species in the genus Waikavirus, family Secoviridae, and we have tentatively named it “camellia virus A” (CamVA). Finally, a field survey was conducted to assess the occurrence of CamVA in camellias and its associated symptoms.
A new positive-strand RNA virus genome was discovered in Camellia japonica plants. The complete genome of the virus is 12,570 nt in size, excluding the poly(A) tail, and contains one large open reading frame (ORF1) and two small open reading frames (ORF2, ORF3). ORF1 and ORF2 are homologous to sequences of waikaviruses, while ORF3 has no relatives in the databases. ORF1 encodes a putative polyprotein precursor that is putatively processed into eight smaller proteins, as in typical waikaviruses. Comprehensive analysis, including BLAST searches, genome organization and pairwise sequence comparisons, and phylogeny reconstructions, invariably placed the virus with the waikaviruses. Furthermore, due to lower amino acid sequence identity to known waikaviruses than the threshold species demarcation cutoff, this virus may represent a new species in the genus Waikavirus , family Secoviridae , and we have tentatively named it “camellia virus A” (CamVA). Finally, a field survey was conducted to assess the occurrence of CamVA in camellias and its associated symptoms.
Author Zhang, Song
Cao, Mengji
Chen, Qingying
Liao, Ruiling
Zhou, Changyong
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Snippet A new positive-strand RNA virus genome was discovered in Camellia japonica plants. The complete genome of the virus is 12,570 nt in size, excluding the poly(A)...
A new positive-strand RNA virus genome was discovered in Camellia japonica plants. The complete genome of the virus is 12,570 nt in size, excluding the poly(A)...
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StartPage 3207
SubjectTerms Amino acid sequence
Annotated Sequence Record
Biomedical and Life Sciences
Biomedicine
Genomes
Infectious Diseases
Medical Microbiology
New species
Nucleotide sequence
Open reading frames
Phylogeny
Poly(A)
Polyadenylation
RNA viruses
Virology
Waikavirus
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Title Complete genome sequence of camellia virus A, a tentative new member of the genus Waikavirus
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