Complete genome sequence of camellia virus A, a tentative new member of the genus Waikavirus
A new positive-strand RNA virus genome was discovered in Camellia japonica plants. The complete genome of the virus is 12,570 nt in size, excluding the poly(A) tail, and contains one large open reading frame (ORF1) and two small open reading frames (ORF2, ORF3). ORF1 and ORF2 are homologous to seque...
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Published in | Archives of virology Vol. 166; no. 11; pp. 3207 - 3210 |
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Main Authors | , , , , |
Format | Journal Article |
Language | English |
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Vienna
Springer Vienna
01.11.2021
Springer Nature B.V |
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Abstract | A new positive-strand RNA virus genome was discovered in
Camellia japonica
plants. The complete genome of the virus is 12,570 nt in size, excluding the poly(A) tail, and contains one large open reading frame (ORF1) and two small open reading frames (ORF2, ORF3). ORF1 and ORF2 are homologous to sequences of waikaviruses, while ORF3 has no relatives in the databases. ORF1 encodes a putative polyprotein precursor that is putatively processed into eight smaller proteins, as in typical waikaviruses. Comprehensive analysis, including BLAST searches, genome organization and pairwise sequence comparisons, and phylogeny reconstructions, invariably placed the virus with the waikaviruses. Furthermore, due to lower amino acid sequence identity to known waikaviruses than the threshold species demarcation cutoff, this virus may represent a new species in the genus
Waikavirus
, family
Secoviridae
, and we have tentatively named it “camellia virus A” (CamVA). Finally, a field survey was conducted to assess the occurrence of CamVA in camellias and its associated symptoms. |
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AbstractList | A new positive-strand RNA virus genome was discovered in Camellia japonica plants. The complete genome of the virus is 12,570 nt in size, excluding the poly(A) tail, and contains one large open reading frame (ORF1) and two small open reading frames (ORF2, ORF3). ORF1 and ORF2 are homologous to sequences of waikaviruses, while ORF3 has no relatives in the databases. ORF1 encodes a putative polyprotein precursor that is putatively processed into eight smaller proteins, as in typical waikaviruses. Comprehensive analysis, including BLAST searches, genome organization and pairwise sequence comparisons, and phylogeny reconstructions, invariably placed the virus with the waikaviruses. Furthermore, due to lower amino acid sequence identity to known waikaviruses than the threshold species demarcation cutoff, this virus may represent a new species in the genus Waikavirus, family Secoviridae, and we have tentatively named it “camellia virus A” (CamVA). Finally, a field survey was conducted to assess the occurrence of CamVA in camellias and its associated symptoms. A new positive-strand RNA virus genome was discovered in Camellia japonica plants. The complete genome of the virus is 12,570 nt in size, excluding the poly(A) tail, and contains one large open reading frame (ORF1) and two small open reading frames (ORF2, ORF3). ORF1 and ORF2 are homologous to sequences of waikaviruses, while ORF3 has no relatives in the databases. ORF1 encodes a putative polyprotein precursor that is putatively processed into eight smaller proteins, as in typical waikaviruses. Comprehensive analysis, including BLAST searches, genome organization and pairwise sequence comparisons, and phylogeny reconstructions, invariably placed the virus with the waikaviruses. Furthermore, due to lower amino acid sequence identity to known waikaviruses than the threshold species demarcation cutoff, this virus may represent a new species in the genus Waikavirus , family Secoviridae , and we have tentatively named it “camellia virus A” (CamVA). Finally, a field survey was conducted to assess the occurrence of CamVA in camellias and its associated symptoms. |
Author | Zhang, Song Cao, Mengji Chen, Qingying Liao, Ruiling Zhou, Changyong |
Author_xml | – sequence: 1 givenname: Ruiling surname: Liao fullname: Liao, Ruiling organization: National Citrus Engineering Research Center, Citrus Research Institute, Southwest University, Academy of Agricultural Sciences, Southwest University – sequence: 2 givenname: Qingying surname: Chen fullname: Chen, Qingying organization: National Citrus Engineering Research Center, Citrus Research Institute, Southwest University, Academy of Agricultural Sciences, Southwest University – sequence: 3 givenname: Song surname: Zhang fullname: Zhang, Song organization: National Citrus Engineering Research Center, Citrus Research Institute, Southwest University, Academy of Agricultural Sciences, Southwest University – sequence: 4 givenname: Mengji orcidid: 0000-0003-0396-262X surname: Cao fullname: Cao, Mengji email: caomengji@cric.cn organization: National Citrus Engineering Research Center, Citrus Research Institute, Southwest University, Academy of Agricultural Sciences, Southwest University – sequence: 5 givenname: Changyong surname: Zhou fullname: Zhou, Changyong email: zhoucy@cric.cn organization: National Citrus Engineering Research Center, Citrus Research Institute, Southwest University, Academy of Agricultural Sciences, Southwest University |
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Cites_doi | 10.1016/j.virusres.2020.197964 10.1007/s00705-011-1166-x 10.1016/j.virusres.2019.197668 10.1093/molbev/msy096 10.1099/jgv.0.000779 10.1099/0022-1317-72-7-1505 10.3389/fmicb.2020.00945 10.1093/molbev/mst010 10.1007/s00705-020-04698-0 10.1007/s10658-020-01978-y 10.1007/s00705-015-2606-9 10.1007/s00705-019-04429-0 10.1094/Phyto-86-25 10.1007/s00705-003-0277-4 10.1099/0022-1317-31-1-47 10.1099/0022-1317-78-5-1165 10.1007/s11262-013-0964-5 10.1094/Phyto-83-522 10.1007/s00705-018-4005-5 10.1007/s00705-018-3780-3 10.1007/s00705-020-04655-x 10.3389/fmicb.2018.02175 10.4149/av_2019_205 |
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Snippet | A new positive-strand RNA virus genome was discovered in
Camellia japonica
plants. The complete genome of the virus is 12,570 nt in size, excluding the poly(A)... A new positive-strand RNA virus genome was discovered in Camellia japonica plants. The complete genome of the virus is 12,570 nt in size, excluding the poly(A)... |
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SubjectTerms | Amino acid sequence Annotated Sequence Record Biomedical and Life Sciences Biomedicine Genomes Infectious Diseases Medical Microbiology New species Nucleotide sequence Open reading frames Phylogeny Poly(A) Polyadenylation RNA viruses Virology Waikavirus |
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Title | Complete genome sequence of camellia virus A, a tentative new member of the genus Waikavirus |
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