Metagenomic study for the identification of viruses infecting soybean in Pakistan
In 2018, symptoms of multiple viruses were observed in a soybean field at Faisalabad, Pakistan. Symptomatic and asymptomatic leaf samples were collected, RNA was extracted, and cDNA was synthesized and characterized using high throughput RNA sequencing (RNAseq). The RNAseq results showed the presenc...
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| Published in | Australasian plant pathology Vol. 52; no. 3; pp. 191 - 194 |
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| Main Authors | , , , , , , |
| Format | Journal Article |
| Language | English |
| Published |
Dordrecht
Springer Netherlands
01.05.2023
Springer Nature B.V |
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| Abstract | In 2018, symptoms of multiple viruses were observed in a soybean field at Faisalabad, Pakistan. Symptomatic and asymptomatic leaf samples were collected, RNA was extracted, and cDNA was synthesized and characterized using high throughput RNA sequencing (RNAseq). The RNAseq results showed the presence of three strains of cowpea mild mottle virus, an RNA virus in the
Carlavirus
genus in the family
Betaflexiviridae
. Eight contigs of a putative member of the genus
Torradovirus
in the family
Secoviridae
were also observed, which was named soybean torradovirus-1. Multiple DNA viruses of the genus
Begomovirus
were also identified. These included mungbean yellow mosaic India virus, mungbean yellow mosaic virus and pedilanthus leaf curl virus. Among the RNA and DNA viruses, cowpea mild mottle virus and mungbean yellow mosaic virus were the most abundant. |
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| AbstractList | In 2018, symptoms of multiple viruses were observed in a soybean field at Faisalabad, Pakistan. Symptomatic and asymptomatic leaf samples were collected, RNA was extracted, and cDNA was synthesized and characterized using high throughput RNA sequencing (RNAseq). The RNAseq results showed the presence of three strains of cowpea mild mottle virus, an RNA virus in the
Carlavirus
genus in the family
Betaflexiviridae
. Eight contigs of a putative member of the genus
Torradovirus
in the family
Secoviridae
were also observed, which was named soybean torradovirus-1. Multiple DNA viruses of the genus
Begomovirus
were also identified. These included mungbean yellow mosaic India virus, mungbean yellow mosaic virus and pedilanthus leaf curl virus. Among the RNA and DNA viruses, cowpea mild mottle virus and mungbean yellow mosaic virus were the most abundant. In 2018, symptoms of multiple viruses were observed in a soybean field at Faisalabad, Pakistan. Symptomatic and asymptomatic leaf samples were collected, RNA was extracted, and cDNA was synthesized and characterized using high throughput RNA sequencing (RNAseq). The RNAseq results showed the presence of three strains of cowpea mild mottle virus, an RNA virus in the Carlavirus genus in the family Betaflexiviridae. Eight contigs of a putative member of the genus Torradovirus in the family Secoviridae were also observed, which was named soybean torradovirus-1. Multiple DNA viruses of the genus Begomovirus were also identified. These included mungbean yellow mosaic India virus, mungbean yellow mosaic virus and pedilanthus leaf curl virus. Among the RNA and DNA viruses, cowpea mild mottle virus and mungbean yellow mosaic virus were the most abundant. |
| Author | Mansoor, Shahid Amin, Imran Rahman, Saleem Ur Domier, Leslie L. Raza, Ghulam McCoppin, Nancy K. Ahmed, Nasim |
| Author_xml | – sequence: 1 givenname: Saleem Ur surname: Rahman fullname: Rahman, Saleem Ur organization: National Institute for Biotechnology and Genetic Engineering (NIBGE), Constituent College Pakistan Institute of Engineering and Applied Sciences – sequence: 2 givenname: Leslie L. surname: Domier fullname: Domier, Leslie L. organization: Department of Crop Sciences, University of Illinois at Urbana-Champaign, Soybean/Maize Germplasm, Pathology and Genetics Research Unit, Department of Agriculture- Agricultural Research Service – sequence: 3 givenname: Ghulam surname: Raza fullname: Raza, Ghulam organization: National Institute for Biotechnology and Genetic Engineering (NIBGE), Constituent College Pakistan Institute of Engineering and Applied Sciences – sequence: 4 givenname: Nasim surname: Ahmed fullname: Ahmed, Nasim organization: National Institute for Biotechnology and Genetic Engineering (NIBGE), Constituent College Pakistan Institute of Engineering and Applied Sciences – sequence: 5 givenname: Nancy K. surname: McCoppin fullname: McCoppin, Nancy K. organization: Department of Crop Sciences, University of Illinois at Urbana-Champaign, Soybean/Maize Germplasm, Pathology and Genetics Research Unit, Department of Agriculture- Agricultural Research Service – sequence: 6 givenname: Imran surname: Amin fullname: Amin, Imran organization: National Institute for Biotechnology and Genetic Engineering (NIBGE), Constituent College Pakistan Institute of Engineering and Applied Sciences – sequence: 7 givenname: Shahid orcidid: 0000-0001-7418-1826 surname: Mansoor fullname: Mansoor, Shahid email: shahidmansoor7@gmail.com organization: National Institute for Biotechnology and Genetic Engineering (NIBGE), Constituent College Pakistan Institute of Engineering and Applied Sciences |
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| SubjectTerms | Agriculture Biomedical and Life Sciences Cowpea mild mottle virus Cowpeas Deoxyribonucleic acid DNA DNA viruses Ecology Entomology family Gene sequencing genus leaf curling Leaf-curl leaves Life Sciences Metagenomics Mungbean yellow mosaic India virus Mungbean yellow mosaic virus Pakistan Plant diseases Plant Pathology Plant Sciences Plant viruses Research Note Ribonucleic acid RNA RNA viruses Soybeans Torradovirus Vigna unguiculata Viruses |
| Title | Metagenomic study for the identification of viruses infecting soybean in Pakistan |
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