Co-occurrence of dual lineages within Simulium (Gomphostilbia) atratum De Meijere in the Indonesian Archipelago along Wallace's Line
Mitochondrial cytochrome c oxidase subunit I (COI) sequences were utilized to infer the population genetic structure of Simulium (Gomphostilbia) atratum De Meijere, an endemic simulid species to Indonesia. Both median-joining haplotype network and maximum-likelihood tree revealed two genetic lineage...
Saved in:
| Published in | Acta tropica Vol. 250; p. 107097 |
|---|---|
| Main Authors | , , , , , , , , , , , |
| Format | Journal Article |
| Language | English |
| Published |
Netherlands
01.02.2024
|
| Subjects | |
| Online Access | Get full text |
| ISSN | 0001-706X 1873-6254 1873-6254 |
| DOI | 10.1016/j.actatropica.2023.107097 |
Cover
| Abstract | Mitochondrial cytochrome c oxidase subunit I (COI) sequences were utilized to infer the population genetic structure of Simulium (Gomphostilbia) atratum De Meijere, an endemic simulid species to Indonesia. Both median-joining haplotype network and maximum-likelihood tree revealed two genetic lineages (A and B) within the species, with an overlap distribution in Lombok, which is situated along Wallace's line. Genetic differentiation and gene flow with varying frequencies (F
= 0.02-0.967; N
= 0.01-10.58) were observed between populations of S. (G.) atratum, of which population pairs of different lineages showed high genetic differentiation. Notably, the high genetic distance of up to 5.92% observed within S. (G.) atratum in Lombok was attributed to the existence of two genetically distinct lineages. The co-occurrence of distinct lineages in Lombok indicated that Wallace's line did not act as faunistic border for S. (G.) atratum in the present study. Moreover, both lineages also exhibited unimodal distributions and negative values of neutrality tests, suggesting a pattern of population expansion. The expansion and divergence time estimation suggested that the two lineages of S. (G.) atratum diverged and expanded during the Pleistocene era in Indonesia. |
|---|---|
| AbstractList | Mitochondrial cytochrome c oxidase subunit I (COI) sequences were utilized to infer the population genetic structure of Simulium (Gomphostilbia) atratum De Meijere, an endemic simulid species to Indonesia. Both median-joining haplotype network and maximum-likelihood tree revealed two genetic lineages (A and B) within the species, with an overlap distribution in Lombok, which is situated along Wallace's line. Genetic differentiation and gene flow with varying frequencies (FST = 0.02–0.967; Nₘ = 0.01–10.58) were observed between populations of S. (G.) atratum, of which population pairs of different lineages showed high genetic differentiation. Notably, the high genetic distance of up to 5.92 % observed within S. (G.) atratum in Lombok was attributed to the existence of two genetically distinct lineages. The co-occurrence of distinct lineages in Lombok indicated that Wallace's line did not act as faunistic border for S. (G.) atratum in the present study. Moreover, both lineages also exhibited unimodal distributions and negative values of neutrality tests, suggesting a pattern of population expansion. The expansion and divergence time estimation suggested that the two lineages of S. (G.) atratum diverged and expanded during the Pleistocene era in Indonesia. Mitochondrial cytochrome c oxidase subunit I (COI) sequences were utilized to infer the population genetic structure of Simulium (Gomphostilbia) atratum De Meijere, an endemic simulid species to Indonesia. Both median-joining haplotype network and maximum-likelihood tree revealed two genetic lineages (A and B) within the species, with an overlap distribution in Lombok, which is situated along Wallace's line. Genetic differentiation and gene flow with varying frequencies (FST = 0.02-0.967; Nm = 0.01-10.58) were observed between populations of S. (G.) atratum, of which population pairs of different lineages showed high genetic differentiation. Notably, the high genetic distance of up to 5.92 % observed within S. (G.) atratum in Lombok was attributed to the existence of two genetically distinct lineages. The co-occurrence of distinct lineages in Lombok indicated that Wallace's line did not act as faunistic border for S. (G.) atratum in the present study. Moreover, both lineages also exhibited unimodal distributions and negative values of neutrality tests, suggesting a pattern of population expansion. The expansion and divergence time estimation suggested that the two lineages of S. (G.) atratum diverged and expanded during the Pleistocene era in Indonesia.Mitochondrial cytochrome c oxidase subunit I (COI) sequences were utilized to infer the population genetic structure of Simulium (Gomphostilbia) atratum De Meijere, an endemic simulid species to Indonesia. Both median-joining haplotype network and maximum-likelihood tree revealed two genetic lineages (A and B) within the species, with an overlap distribution in Lombok, which is situated along Wallace's line. Genetic differentiation and gene flow with varying frequencies (FST = 0.02-0.967; Nm = 0.01-10.58) were observed between populations of S. (G.) atratum, of which population pairs of different lineages showed high genetic differentiation. Notably, the high genetic distance of up to 5.92 % observed within S. (G.) atratum in Lombok was attributed to the existence of two genetically distinct lineages. The co-occurrence of distinct lineages in Lombok indicated that Wallace's line did not act as faunistic border for S. (G.) atratum in the present study. Moreover, both lineages also exhibited unimodal distributions and negative values of neutrality tests, suggesting a pattern of population expansion. The expansion and divergence time estimation suggested that the two lineages of S. (G.) atratum diverged and expanded during the Pleistocene era in Indonesia. Mitochondrial cytochrome c oxidase subunit I (COI) sequences were utilized to infer the population genetic structure of Simulium (Gomphostilbia) atratum De Meijere, an endemic simulid species to Indonesia. Both median-joining haplotype network and maximum-likelihood tree revealed two genetic lineages (A and B) within the species, with an overlap distribution in Lombok, which is situated along Wallace's line. Genetic differentiation and gene flow with varying frequencies (F = 0.02-0.967; N = 0.01-10.58) were observed between populations of S. (G.) atratum, of which population pairs of different lineages showed high genetic differentiation. Notably, the high genetic distance of up to 5.92% observed within S. (G.) atratum in Lombok was attributed to the existence of two genetically distinct lineages. The co-occurrence of distinct lineages in Lombok indicated that Wallace's line did not act as faunistic border for S. (G.) atratum in the present study. Moreover, both lineages also exhibited unimodal distributions and negative values of neutrality tests, suggesting a pattern of population expansion. The expansion and divergence time estimation suggested that the two lineages of S. (G.) atratum diverged and expanded during the Pleistocene era in Indonesia. |
| ArticleNumber | 107097 |
| Author | Sofian-Azirun, Mohd Tan, Tiong Kai Ya'cob, Zubaidah Hadi, Upik Kesumawati Chen, Chee Dhang Muhammad-Rasul, Abdullah Halim Takaoka, Hiroyuki Putt, Qi Yan Suana, I Wayan Hew, Yan Xin Lau, Koon Weng Low, Van Lun |
| Author_xml | – sequence: 1 givenname: Yan Xin orcidid: 0009-0006-6198-8747 surname: Hew fullname: Hew, Yan Xin – sequence: 2 givenname: Zubaidah surname: Ya'cob fullname: Ya'cob, Zubaidah – sequence: 3 givenname: Chee Dhang surname: Chen fullname: Chen, Chee Dhang – sequence: 4 givenname: Koon Weng surname: Lau fullname: Lau, Koon Weng – sequence: 5 givenname: Mohd surname: Sofian-Azirun fullname: Sofian-Azirun, Mohd – sequence: 6 givenname: Abdullah Halim surname: Muhammad-Rasul fullname: Muhammad-Rasul, Abdullah Halim – sequence: 7 givenname: Qi Yan surname: Putt fullname: Putt, Qi Yan – sequence: 8 givenname: Tiong Kai surname: Tan fullname: Tan, Tiong Kai – sequence: 9 givenname: Upik Kesumawati surname: Hadi fullname: Hadi, Upik Kesumawati – sequence: 10 givenname: I Wayan orcidid: 0000-0003-1443-9017 surname: Suana fullname: Suana, I Wayan – sequence: 11 givenname: Hiroyuki surname: Takaoka fullname: Takaoka, Hiroyuki – sequence: 12 givenname: Van Lun surname: Low fullname: Low, Van Lun |
| BackLink | https://www.ncbi.nlm.nih.gov/pubmed/38097150$$D View this record in MEDLINE/PubMed |
| BookMark | eNqNkU1v1DAQhi1URLeFv4DMiXLI4o84jk-oWqBUWsQBENwixxnveuXYqZ0I9d4fjqstCHEBzWE0o2dmXs17hk5CDIDQC0rWlNDm9WGtzaznFCdn9JoRxktfEiUfoRVtJa8aJuoTtCKE0EqS5vspOsv5UComBXuCTnlbYCrICt1tYhWNWVKCYABHi4dFe-xdAL2DjH-4ee8C_uzGxbtlxBdXcZz2Mc_O906_wkWFnkv_LeCP4A6QABd83gO-DkNRnZ0O-DKZvZvA613E2seww9-099rAy4y35dJT9Nhqn-HZQz5HX9-_-7L5UG0_XV1vLreV4YLMFVBqSM0srzkDYokdGg69ElJzKdu6sUPftqpXdpBDra1oBZG8sbaV_UDE0PNzdHHcO6V4s0Ceu9FlA0VKgLjkjpO6hBBK_RNlijAlBOWsoM8f0KUfYeim5EadbrtfTy6AOgImxZwT2N8IJd29od2h-8PQ7t7Q7mhomX3z16xxhXQxlMc7_x8bfgLknK3p |
| CitedBy_id | crossref_primary_10_3390_d16110653 |
| Cites_doi | 10.1093/oxfordjournals.molbev.a026036 10.1038/s41598-017-05921-w 10.3897/dez.61.7046 10.1111/j.1365-294X.2005.02639.x 10.1371/journal.pone.0100512 10.1093/molbev/msx248 10.1146/annurev-ecolsys-102710-145001 10.1093/ae/43.3.153 10.1093/molbev/msab120 10.1016/j.actatropica.2020.105415 10.1111/j.1479-8298.2011.00465.x 10.11646/zootaxa.3577.1.1 10.1046/j.1365-2699.2000.00489.x 10.1046/j.1420-9101.1989.2030173.x 10.1093/jme/tjw058 10.1073/pnas.91.14.6491 10.1007/s00227-010-1470-0 10.1093/jme/tjv080 10.1111/1755-0998.13281 10.1111/ens.12008 10.2307/1799061 10.1093/oxfordjournals.molbev.a004034 10.1093/sysbio/syy032 10.1098/rstb.2003.1388 10.1016/j.tig.2007.02.001 10.1016/0025-3227(82)90069-X 10.1111/j.1755-0998.2010.02847.x 10.14411/eje.2015.033 10.1016/j.actatropica.2017.01.016 10.7717/peerj.5684 10.1146/annurev.es.18.110187.002421 10.1139/g2012-031 10.1046/j.1365-294x.1998.00308.x 10.1016/j.actatropica.2018.02.013 10.1093/bioinformatics/bts091 10.1016/j.actatropica.2021.106301 10.1016/j.aspen.2014.11.002 10.1111/j.1420-9101.2008.01606.x 10.1016/j.actatropica.2017.02.005 10.1111/jen.12983 10.1093/jhered/89.5.415 10.1093/bioinformatics/btx025 10.1371/journal.pcbi.1006650 10.1093/genetics/123.3.585 10.1126/science.288.5468.1033 10.1016/j.jcz.2016.10.002 10.1016/j.actatropica.2016.12.009 10.7601/mez.47.55_1 10.1086/284267 10.1111/j.1755-0998.2009.02648.x 10.1016/j.actatropica.2019.105275 10.1016/j.ympev.2008.01.017 10.1093/genetics/147.2.915 10.1098/rspb.2009.0015 10.1016/j.meegid.2010.07.003 10.1093/molbev/msq051 10.1111/2041-210X.12410 |
| ContentType | Journal Article |
| Copyright | Copyright © 2023. Published by Elsevier B.V. |
| Copyright_xml | – notice: Copyright © 2023. Published by Elsevier B.V. |
| DBID | AAYXX CITATION NPM 7X8 7S9 L.6 |
| DOI | 10.1016/j.actatropica.2023.107097 |
| DatabaseName | CrossRef PubMed MEDLINE - Academic AGRICOLA AGRICOLA - Academic |
| DatabaseTitle | CrossRef PubMed MEDLINE - Academic AGRICOLA AGRICOLA - Academic |
| DatabaseTitleList | AGRICOLA MEDLINE - Academic PubMed |
| Database_xml | – sequence: 1 dbid: NPM name: PubMed url: https://proxy.k.utb.cz/login?url=http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=PubMed sourceTypes: Index Database |
| DeliveryMethod | fulltext_linktorsrc |
| Discipline | Medicine Sciences (General) |
| EISSN | 1873-6254 |
| ExternalDocumentID | 38097150 10_1016_j_actatropica_2023_107097 |
| Genre | Journal Article |
| GeographicLocations | Indonesia |
| GeographicLocations_xml | – name: Indonesia |
| GroupedDBID | --- --K --M -~X .GJ .~1 0R~ 1B1 1~. 1~5 23M 4.4 457 4G. 53G 5GY 5VS 7-5 71M 8P~ 9JM AAAJQ AAEDT AAEDW AAHBH AAIKJ AAKOC AALRI AAOAW AAQFI AAQXK AARKO AATTM AAXKI AAXUO AAYWO AAYXX ABBQC ABFNM ABJNI ABMAC ABMZM ABWVN ABXDB ACDAQ ACIEU ACIUM ACRLP ACRPL ACVFH ADBBV ADCNI ADEZE ADMUD ADNMO AEBSH AEIPS AEKER AENEX AEUPX AFJKZ AFPUW AFTJW AFXIZ AGCQF AGEKW AGHFR AGQPQ AGRNS AGUBO AGYEJ AHHHB AIEXJ AIGII AIIUN AIKHN AITUG AJRQY AKBMS AKRWK AKYEP ALMA_UNASSIGNED_HOLDINGS AMRAJ ANKPU ANZVX APXCP ASPBG AVWKF AXJTR AZFZN BKOJK BLXMC BNPGV CITATION CJTIS CNWQP CS3 EBS EFJIC EJD EO8 EO9 EP2 EP3 F5P FDB FEDTE FGOYB FIRID FNPLU FYGXN G-2 G-Q GBLVA HEJ HLV HMG HMK HMO HTE HVGLF HZ~ IHE J1W K-O KOM L7B LUGTX LW9 M29 M41 MO0 N9A O-L O9- OAUVE OK1 OZT P-8 P-9 P2P PC. Q38 R2- RIG ROL RPZ SAB SAE SCC SDF SDG SDP SES SEW SIN SPCBC SSH SSI SSZ T5K UHS WUQ ZGI ZXP ~G- ~KM EFKBS NPM 7X8 EFLBG 7S9 L.6 |
| ID | FETCH-LOGICAL-c350t-e11c042f3432e0f0fd63eb957a377846fdb889b9fd7d4af5850736ff87bd05db3 |
| ISSN | 0001-706X 1873-6254 |
| IngestDate | Thu Sep 04 17:50:11 EDT 2025 Fri Sep 05 10:17:50 EDT 2025 Mon Jul 21 06:08:57 EDT 2025 Thu Apr 24 23:03:47 EDT 2025 Tue Jul 01 02:41:34 EDT 2025 |
| IsPeerReviewed | true |
| IsScholarly | true |
| Keywords | population genetics faunistic border black fly COI Indonesia |
| Language | English |
| License | Copyright © 2023. Published by Elsevier B.V. |
| LinkModel | OpenURL |
| MergedId | FETCHMERGED-LOGICAL-c350t-e11c042f3432e0f0fd63eb957a377846fdb889b9fd7d4af5850736ff87bd05db3 |
| Notes | ObjectType-Article-1 SourceType-Scholarly Journals-1 ObjectType-Feature-2 content type line 23 |
| ORCID | 0000-0003-1443-9017 0009-0006-6198-8747 |
| PMID | 38097150 |
| PQID | 2902955132 |
| PQPubID | 23479 |
| ParticipantIDs | proquest_miscellaneous_3040405599 proquest_miscellaneous_2902955132 pubmed_primary_38097150 crossref_primary_10_1016_j_actatropica_2023_107097 crossref_citationtrail_10_1016_j_actatropica_2023_107097 |
| ProviderPackageCode | CITATION AAYXX |
| PublicationCentury | 2000 |
| PublicationDate | 2024-02-01 |
| PublicationDateYYYYMMDD | 2024-02-01 |
| PublicationDate_xml | – month: 02 year: 2024 text: 2024-02-01 day: 01 |
| PublicationDecade | 2020 |
| PublicationPlace | Netherlands |
| PublicationPlace_xml | – name: Netherlands |
| PublicationTitle | Acta tropica |
| PublicationTitleAlternate | Acta Trop |
| PublicationYear | 2024 |
| References | Folmer (10.1016/j.actatropica.2023.107097_bib0019) 1994; 3 Hajibabaei (10.1016/j.actatropica.2023.107097_bib0026) 2007; 23 Tamura (10.1016/j.actatropica.2023.107097_bib0066) 2021; 38 Avise (10.1016/j.actatropica.2023.107097_bib0004) 2000 Low (10.1016/j.actatropica.2023.107097_bib0041) 2017; 7 Pramual (10.1016/j.actatropica.2023.107097_bib0055) 2013; 16 Hall (10.1016/j.actatropica.2023.107097_bib0027) 1999; 41 Rozas (10.1016/j.actatropica.2023.107097_bib0061) 2017; 34 Adler (10.1016/j.actatropica.2023.107097_bib0002) 2010; 10 Okonechnikov (10.1016/j.actatropica.2023.107097_bib0044) 2012; 28 Bandelt (10.1016/j.actatropica.2023.107097_bib0008) 1999; 16 Pavitra (10.1016/j.actatropica.2023.107097_bib0047) 2020; 205 Hewitt (10.1016/j.actatropica.2023.107097_bib0030) 2004; 359 Jenkins (10.1016/j.actatropica.2023.107097_bib0031) 2018; 6 Lohman (10.1016/j.actatropica.2023.107097_bib0037) 2011; 42 Pramual (10.1016/j.actatropica.2023.107097_bib0054) 2015; 52 Brower (10.1016/j.actatropica.2023.107097_bib0010) 1994; 91 Edwards (10.1016/j.actatropica.2023.107097_bib0016) 1934; 13 van Oosterzee (10.1016/j.actatropica.2023.107097_bib0068) 1997 Govindaraju (10.1016/j.actatropica.2023.107097_bib0022) 1989; 2 Darlington (10.1016/j.actatropica.2023.107097_bib0013) 1957 Ya'cob (10.1016/j.actatropica.2023.107097_bib0073) 2017; 169 Hadi (10.1016/j.actatropica.2023.107097_bib0025) 1996; 47 Leigh (10.1016/j.actatropica.2023.107097_bib0036) 2015; 6 O'Loughlin (10.1016/j.actatropica.2023.107097_bib0043) 2008; 21 Papadopoulou (10.1016/j.actatropica.2023.107097_bib0045) 2010; 27 (10.1016/j.actatropica.2023.107097_bib0067) 1998; 7 Excoffier (10.1016/j.actatropica.2023.107097_bib0018) 2010; 10 Tajima (10.1016/j.actatropica.2023.107097_bib0062) 1989; 123 Balke (10.1016/j.actatropica.2023.107097_bib0006) 2009; 276 Crosskey (10.1016/j.actatropica.2023.107097_bib0012) 1990 Malicky (10.1016/j.actatropica.2023.107097_bib0042) 2014; 61 Grant (10.1016/j.actatropica.2023.107097_bib0023) 1998; 89 Fu (10.1016/j.actatropica.2023.107097_bib0021) 1997; 147 Pavitra (10.1016/j.actatropica.2023.107097_bib0046) 2020; 202 Rambaut (10.1016/j.actatropica.2023.107097_bib0057) 2018; 67 Kapli (10.1016/j.actatropica.2023.107097_bib0033) 2017; 33 Takaoka (10.1016/j.actatropica.2023.107097_bib0063) 1995; 6 Takaoka (10.1016/j.actatropica.2023.107097_bib0065) 2017; 169 Pramual (10.1016/j.actatropica.2023.107097_bib0050) 2011; 14 Puillandre (10.1016/j.actatropica.2023.107097_bib0056) 2021; 21 Ramos-Onsins (10.1016/j.actatropica.2023.107097_bib0058) 2002; 19 Bănărescu (10.1016/j.actatropica.2023.107097_bib0007) 1995; 3 Friederichs (10.1016/j.actatropica.2023.107097_bib0020) 1925; 29 Takaoka (10.1016/j.actatropica.2023.107097_bib0064) 2012; 3577 Wright (10.1016/j.actatropica.2023.107097_bib0071) 1978; 4 Jønsson (10.1016/j.actatropica.2023.107097_bib0032) 2008; 47 Adler (10.1016/j.actatropica.2023.107097_bib0003) 1997; 43 Lau (10.1016/j.actatropica.2023.107097_bib0035) 2022; 146 Kunprom (10.1016/j.actatropica.2023.107097_bib0034) 2015; 112 Hanebuth (10.1016/j.actatropica.2023.107097_bib0028) 2000; 288 Voris (10.1016/j.actatropica.2023.107097_bib0069) 2000; 27 Low (10.1016/j.actatropica.2023.107097_bib0039) 2017; 266 Avise (10.1016/j.actatropica.2023.107097_bib0005) 1987; 18 Wallace (10.1016/j.actatropica.2023.107097_bib0070) 1862; 7 Ya'cob (10.1016/j.actatropica.2023.107097_bib0072) 2017; 167 Hadi (10.1016/j.actatropica.2023.107097_bib0024) 2018; 185 Rivera (10.1016/j.actatropica.2023.107097_bib0059) 2009; 9 Low (10.1016/j.actatropica.2023.107097_bib0038) 2014; 9 Pramual (10.1016/j.actatropica.2023.107097_bib0053) 2015; 18 Pérez-Portela (10.1016/j.actatropica.2023.107097_bib0048) 2010; 157 Pramual (10.1016/j.actatropica.2023.107097_bib0052) 2005; 14 de Lattin (10.1016/j.actatropica.2023.107097_bib0014) 1967; 12 10.1016/j.actatropica.2023.107097_bib0001 Rogers (10.1016/j.actatropica.2023.107097_bib0060) 1992; 9 De Meijere (10.1016/j.actatropica.2023.107097_bib0015) 1913; 56 Bouckaert (10.1016/j.actatropica.2023.107097_bib0009) 2019; 15 Brown (10.1016/j.actatropica.2023.107097_bib0011) 1984; 124 Pramual (10.1016/j.actatropica.2023.107097_bib0051) 2012; 55 Pramual (10.1016/j.actatropica.2023.107097_bib0049) 2022; 227 Emmel (10.1016/j.actatropica.2023.107097_bib0017) 1982; 47 Harpending (10.1016/j.actatropica.2023.107097_bib0029) 1994; 66 Low (10.1016/j.actatropica.2023.107097_bib0040) 2016; 53 |
| References_xml | – ident: 10.1016/j.actatropica.2023.107097_bib0001 – volume: 16 start-page: 37 issue: 1 year: 1999 ident: 10.1016/j.actatropica.2023.107097_bib0008 article-title: Median-joining networks for inferring intraspecific phylogenies publication-title: Mol. Biol. Evol. doi: 10.1093/oxfordjournals.molbev.a026036 – volume: 7 start-page: 5871 issue: 1 year: 2017 ident: 10.1016/j.actatropica.2023.107097_bib0041 article-title: Contrasting evolutionary patterns between two haplogroups of Haematobia exigua (Diptera: muscidae) from the mainland and islands of Southeast Asia publication-title: Sci. Rep. doi: 10.1038/s41598-017-05921-w – volume: 61 start-page: 3 issue: 1 year: 2014 ident: 10.1016/j.actatropica.2023.107097_bib0042 article-title: Caddisflies (Trichoptera) from Lombok, Bali and Java (Indonesia), with a discussion of Wallace's Line publication-title: Deutsch. Entomol. Z. doi: 10.3897/dez.61.7046 – volume: 6 start-page: 19 year: 1995 ident: 10.1016/j.actatropica.2023.107097_bib0063 article-title: The black flies (Diptera: Simuliidae) of Java, Indonesia publication-title: Bish. Mus. Bull. Entomol. – volume: 14 start-page: 3989 issue: 13 year: 2005 ident: 10.1016/j.actatropica.2023.107097_bib0052 article-title: Phylogeography of the black fly Simulium tani (Diptera: Simuliidae) from Thailand as inferred from mtDNA sequences publication-title: Mol. Ecol. doi: 10.1111/j.1365-294X.2005.02639.x – volume: 56 start-page: 317 year: 1913 ident: 10.1016/j.actatropica.2023.107097_bib0015 article-title: Studien uber Sudostasiatische Dipteren VII publication-title: Tijdschr. Entomol. – volume: 9 issue: 6 year: 2014 ident: 10.1016/j.actatropica.2023.107097_bib0038 article-title: Mitochondrial DNA markers reveal high genetic diversity but low genetic differentiation in the black fly Simulium tani Takaoka & Davies along an elevational gradient in Malaysia publication-title: PLoS One doi: 10.1371/journal.pone.0100512 – volume: 34 start-page: 3299 issue: 12 year: 2017 ident: 10.1016/j.actatropica.2023.107097_bib0061 article-title: DnaSP 6: DNA sequence polymorphism analysis of large data sets publication-title: Mol. Biol. Evol. doi: 10.1093/molbev/msx248 – volume: 29 start-page: 119 year: 1925 ident: 10.1016/j.actatropica.2023.107097_bib0020 article-title: Beobachtungen an simuliiden in Ost-Java publication-title: Archiv fur Schiffs-und Tropenhygiene. – volume: 42 start-page: 205 issue: 1 year: 2011 ident: 10.1016/j.actatropica.2023.107097_bib0037 article-title: Biogeography of the Indo-Australian Archipelago publication-title: Annu. Rev. Ecol. Evol. Syst. doi: 10.1146/annurev-ecolsys-102710-145001 – volume: 41 start-page: 95 issue: 41 year: 1999 ident: 10.1016/j.actatropica.2023.107097_bib0027 article-title: BioEdit: a user-friendly biological sequence alignment editor and analysis program for Windows 95/98/NT publication-title: Nucleic Acids Symp. Ser. – volume: 43 start-page: 153 issue: 3 year: 1997 ident: 10.1016/j.actatropica.2023.107097_bib0003 article-title: Insect life: the hidden ecology of black flies: sibling species and ecological scale publication-title: Am. Entomol. doi: 10.1093/ae/43.3.153 – volume: 38 start-page: 3022 issue: 7 year: 2021 ident: 10.1016/j.actatropica.2023.107097_bib0066 article-title: MEGA11: molecular evolutionary genetics analysis version 11 publication-title: Mol. Biol. Evol. doi: 10.1093/molbev/msab120 – volume: 205 year: 2020 ident: 10.1016/j.actatropica.2023.107097_bib0047 article-title: Genetic diversity and differentiation in the blackflies Simulium cheongi, Simulium jeffreyi and Simulium vanluni (Diptera: Simuliidae) in Peninsular Malaysia publication-title: Acta Trop. doi: 10.1016/j.actatropica.2020.105415 – volume: 14 start-page: 428 issue: 4 year: 2011 ident: 10.1016/j.actatropica.2023.107097_bib0050 article-title: Phylogeography of Simulium siamense Takaoka and Suzuki complex (Diptera: Simuliidae) in Thailand publication-title: Entomol. Sci. doi: 10.1111/j.1479-8298.2011.00465.x – volume: 3577 start-page: 1 issue: 1 year: 2012 ident: 10.1016/j.actatropica.2023.107097_bib0064 article-title: Morphotaxonomic revision of Simulium (Gomphostilbia)(Diptera: Simuliidae) in the Oriental Region publication-title: Zootaxa doi: 10.11646/zootaxa.3577.1.1 – volume: 27 start-page: 1153 issue: 5 year: 2000 ident: 10.1016/j.actatropica.2023.107097_bib0069 article-title: Maps of Pleistocene sea levels in Southeast Asia: shorelines, river systems and time durations publication-title: J. Biogeogr. doi: 10.1046/j.1365-2699.2000.00489.x – volume: 13 start-page: 92 year: 1934 ident: 10.1016/j.actatropica.2023.107097_bib0016 article-title: The Simuliidae (Diptera) of Java and Sumatra publication-title: Arch. Hydrobiol. – volume: 2 start-page: 173 issue: 3 year: 1989 ident: 10.1016/j.actatropica.2023.107097_bib0022 article-title: Variation in gene flow levels among predominantly self-pollinated plants publication-title: J. Evol. Biol. doi: 10.1046/j.1420-9101.1989.2030173.x – volume: 53 start-page: 972 issue: 4 year: 2016 ident: 10.1016/j.actatropica.2023.107097_bib0040 article-title: Three taxa in one: cryptic diversity in the black fly Simulium nobile (Diptera: Simuliidae) in Southeast Asia publication-title: J. Med. Entomol. doi: 10.1093/jme/tjw058 – volume: 91 start-page: 6491 issue: 14 year: 1994 ident: 10.1016/j.actatropica.2023.107097_bib0010 article-title: Rapid morphological radiation and convergence among races of the butterfly Heliconius erato inferred from patterns of mitochondrial DNA evolution publication-title: Proc. Natl. Acad. Sci. doi: 10.1073/pnas.91.14.6491 – volume: 157 start-page: 2015 issue: 9 year: 2010 ident: 10.1016/j.actatropica.2023.107097_bib0048 article-title: Phylogeography of the sea star Marthasterias glacialis (Asteroidea, Echinodermata): deep genetic divergence between mitochondrial lineages in the north-western mediterranean publication-title: Mar. Biol. doi: 10.1007/s00227-010-1470-0 – volume: 52 start-page: 829 issue: 5 year: 2015 ident: 10.1016/j.actatropica.2023.107097_bib0054 article-title: Cytogenetic and molecular evidence of additional cryptic diversity in high elevation black fly Simulium feuerborni (Diptera: Simuliidae) populations in Southeast Asia publication-title: J. Med. Entomol. doi: 10.1093/jme/tjv080 – volume: 21 start-page: 609 issue: 2 year: 2021 ident: 10.1016/j.actatropica.2023.107097_bib0056 article-title: ASAP: assemble species by automatic partitioning publication-title: Mol. Ecol. Resour. doi: 10.1111/1755-0998.13281 – volume: 16 start-page: 298 issue: 3 year: 2013 ident: 10.1016/j.actatropica.2023.107097_bib0055 article-title: Population genetics of the high elevation black fly Simulium (Nevermannia) feuerborni Edwards in Thailand publication-title: Entomol. Sci. doi: 10.1111/ens.12008 – year: 1997 ident: 10.1016/j.actatropica.2023.107097_bib0068 – volume: 7 start-page: 206 issue: 5 year: 1862 ident: 10.1016/j.actatropica.2023.107097_bib0070 article-title: On the physical geography of the Malay Archipelago publication-title: Proc. R. Geographical Soc. Lond. doi: 10.2307/1799061 – volume: 3 start-page: 294 issue: 5 year: 1994 ident: 10.1016/j.actatropica.2023.107097_bib0019 article-title: DNA primers for amplification of mitochondrial cytochrome c oxidase subunit I from diverse metazoan invertebrates publication-title: Mol. Mar. Biol. Biotechnol. – volume: 19 start-page: 2092 issue: 12 year: 2002 ident: 10.1016/j.actatropica.2023.107097_bib0058 article-title: Statistical properties of new neutrality tests against population growth publication-title: Mol. Biol. Evol. doi: 10.1093/oxfordjournals.molbev.a004034 – volume: 12 year: 1967 ident: 10.1016/j.actatropica.2023.107097_bib0014 – volume: 67 start-page: 901 issue: 5 year: 2018 ident: 10.1016/j.actatropica.2023.107097_bib0057 article-title: Posterior summarization in Bayesian phylogenetics using Tracer 1.7 publication-title: Syst. Biol. doi: 10.1093/sysbio/syy032 – volume: 359 start-page: 183 issue: 1442 year: 2004 ident: 10.1016/j.actatropica.2023.107097_bib0030 article-title: Genetic consequences of climatic oscillations in the Quaternary publication-title: Philos. Trans. R. Soc. Lond. B Biol. Sci. doi: 10.1098/rstb.2003.1388 – volume: 23 start-page: 167 issue: 4 year: 2007 ident: 10.1016/j.actatropica.2023.107097_bib0026 article-title: DNA barcoding: how it complements taxonomy, molecular phylogenetics and population genetics publication-title: Trends Genet. doi: 10.1016/j.tig.2007.02.001 – volume: 47 start-page: 197 issue: 3 year: 1982 ident: 10.1016/j.actatropica.2023.107097_bib0017 article-title: A submerged late Pleistocene delta and other features related to sea level changes in the Malacca Strait publication-title: Mar. Geol. doi: 10.1016/0025-3227(82)90069-X – volume: 10 start-page: 564 issue: 3 year: 2010 ident: 10.1016/j.actatropica.2023.107097_bib0018 article-title: Arlequin suite ver 3.5: a new series of programs to perform population genetics analyses under Linux and Windows publication-title: Mol. Ecol. Resour. doi: 10.1111/j.1755-0998.2010.02847.x – volume: 112 start-page: 227 issue: 2 year: 2015 ident: 10.1016/j.actatropica.2023.107097_bib0034 article-title: Population genetics and demographic history of guava fruit fly Bactrocera correcta (Diptera: tephritidae) in northeastern Thailand publication-title: Eur. J. Entomol. doi: 10.14411/eje.2015.033 – volume: 169 start-page: 170 year: 2017 ident: 10.1016/j.actatropica.2023.107097_bib0065 article-title: The black flies (Diptera: Simuliidae) of the lesser Sunda Archipelago, Indonesia publication-title: Acta Trop. doi: 10.1016/j.actatropica.2017.01.016 – volume: 6 start-page: e5684 year: 2018 ident: 10.1016/j.actatropica.2023.107097_bib0031 article-title: Meta-analysis of northeast Atlantic marine taxa shows contrasting phylogeographic patterns following post-LGM expansions publication-title: PeerJ doi: 10.7717/peerj.5684 – volume: 18 start-page: 489 issue: 1 year: 1987 ident: 10.1016/j.actatropica.2023.107097_bib0005 article-title: Intraspecific phylogeography: the mitochondrial DNA bridge between population genetics and systematics publication-title: Annu. Rev. Ecol. Syst. doi: 10.1146/annurev.es.18.110187.002421 – year: 2000 ident: 10.1016/j.actatropica.2023.107097_bib0004 – volume: 55 start-page: 447 issue: 6 year: 2012 ident: 10.1016/j.actatropica.2023.107097_bib0051 article-title: Integrated cytogenetic, ecological, and DNA barcode study reveals cryptic diversity in Simulium (Gomphostilbia) angulistylum (Diptera: Simuliidae) publication-title: Genome doi: 10.1139/g2012-031 – year: 1957 ident: 10.1016/j.actatropica.2023.107097_bib0013 – volume: 7 start-page: 381 issue: 4 year: 1998 ident: 10.1016/j.actatropica.2023.107097_bib0067 article-title: Nested clade analyses of phylogeographic data: testing hypotheses about gene flow and population history publication-title: Mol. Ecol. doi: 10.1046/j.1365-294x.1998.00308.x – volume: 185 start-page: 133 year: 2018 ident: 10.1016/j.actatropica.2023.107097_bib0024 article-title: The biodiversity of black flies (Diptera: Simuliidae) in Indonesia publication-title: Acta Trop. doi: 10.1016/j.actatropica.2018.02.013 – volume: 28 start-page: 1166 issue: 8 year: 2012 ident: 10.1016/j.actatropica.2023.107097_bib0044 article-title: Unipro UGENE: a unified bioinformatics toolkit publication-title: Bioinformatics doi: 10.1093/bioinformatics/bts091 – volume: 227 year: 2022 ident: 10.1016/j.actatropica.2023.107097_bib0049 article-title: Population structure and population history of the black fly Simulium chumpornense (Diptera: Simuliidae) from Thailand publication-title: Acta Trop. doi: 10.1016/j.actatropica.2021.106301 – volume: 18 start-page: 33 issue: 1 year: 2015 ident: 10.1016/j.actatropica.2023.107097_bib0053 article-title: Effects of habitat specialization on population genetic structure of black fly Simulium weji Takaoka (Diptera: Simuliidae) publication-title: J. Asia Pac. Entomol. doi: 10.1016/j.aspen.2014.11.002 – volume: 21 start-page: 1555 issue: 6 year: 2008 ident: 10.1016/j.actatropica.2023.107097_bib0043 article-title: Complex population history of two Anopheles dirus mosquito species in Southeast Asia suggests the influence of Pleistocene climate change rather than human-mediated effects publication-title: J. Evol. Biol. doi: 10.1111/j.1420-9101.2008.01606.x – volume: 169 start-page: 133 year: 2017 ident: 10.1016/j.actatropica.2023.107097_bib0073 article-title: Uncovering the mask of the Simulium feuerborni complex (Diptera: Simuliidae): description of a new pseudocryptic species Simulium pairoti from Malaysia publication-title: Acta Trop. doi: 10.1016/j.actatropica.2017.02.005 – volume: 146 start-page: 615 issue: 5 year: 2022 ident: 10.1016/j.actatropica.2023.107097_bib0035 article-title: Genetic diversity of Aedes albopictus (Skuse) in Sarawak, Malaysia and other regions of the world publication-title: J. Appl. Entomol. doi: 10.1111/jen.12983 – volume: 89 start-page: 415 issue: 5 year: 1998 ident: 10.1016/j.actatropica.2023.107097_bib0023 article-title: Shallow population histories in deep evolutionary lineages of marine fishes: insights from sardines and anchovies and lessons for conservation publication-title: J. Hered. doi: 10.1093/jhered/89.5.415 – volume: 66 start-page: 591 issue: 4 year: 1994 ident: 10.1016/j.actatropica.2023.107097_bib0029 article-title: Signature of ancient population growth in a low-resolution mitochondrial DNA mismatch distribution publication-title: Hum. Biol. – volume: 33 start-page: 1630 issue: 11 year: 2017 ident: 10.1016/j.actatropica.2023.107097_bib0033 article-title: Multi-rate Poisson tree processes for single-locus species delimitation under maximum likelihood and Markov chain Monte Carlo publication-title: Bioinformatics doi: 10.1093/bioinformatics/btx025 – volume: 4 year: 1978 ident: 10.1016/j.actatropica.2023.107097_bib0071 article-title: Evolution and the Genetics of Populations – volume: 3 year: 1995 ident: 10.1016/j.actatropica.2023.107097_bib0007 – volume: 15 issue: 4 year: 2019 ident: 10.1016/j.actatropica.2023.107097_bib0009 article-title: BEAST 2.5: an advanced software platform for Bayesian evolutionary analysis publication-title: PLoS Comput. Biol. doi: 10.1371/journal.pcbi.1006650 – volume: 9 start-page: 552 issue: 3 year: 1992 ident: 10.1016/j.actatropica.2023.107097_bib0060 article-title: Population growth makes waves in the distribution of pairwise genetic differences publication-title: Mol. Biol. Evol. – volume: 123 start-page: 585 issue: 3 year: 1989 ident: 10.1016/j.actatropica.2023.107097_bib0062 article-title: Statistical method for testing the neutral mutation hypothesis by DNA polymorphism publication-title: Genetics doi: 10.1093/genetics/123.3.585 – volume: 288 start-page: 1033 issue: 5468 year: 2000 ident: 10.1016/j.actatropica.2023.107097_bib0028 article-title: Rapid flooding of the Sunda Shelf: a late-glacial sea-level record publication-title: Science doi: 10.1126/science.288.5468.1033 – volume: 266 start-page: 23 year: 2017 ident: 10.1016/j.actatropica.2023.107097_bib0039 article-title: Pleistocene demographic expansion and high gene flow in the Globe Skimmer dragonfly Pantala flavescens Fabricius (Odonata: libellulidae) in Peninsular Malaysia publication-title: Zool. Anz. doi: 10.1016/j.jcz.2016.10.002 – volume: 167 start-page: 31 year: 2017 ident: 10.1016/j.actatropica.2023.107097_bib0072 article-title: First description of a new cryptic species, Simulium vanluni from Peninsular Malaysia: an integrated morpho-taxonomical and genetic approach for naming cryptic species in the family Simuliidae publication-title: Acta Trop. doi: 10.1016/j.actatropica.2016.12.009 – volume: 47 start-page: 55 issue: 1 year: 1996 ident: 10.1016/j.actatropica.2023.107097_bib0025 article-title: Larval salivary gland chromosomes of the blackfly, Simulium (Gomphostilbia) sundaicum (Diptera: Simuliidae) from Java, Indonesia publication-title: Med. Entomol. Zool. doi: 10.7601/mez.47.55_1 – volume: 124 start-page: 255 issue: 2 year: 1984 ident: 10.1016/j.actatropica.2023.107097_bib0011 article-title: On the relationship between abundance and distribution of species publication-title: Am. Nat. doi: 10.1086/284267 – volume: 9 start-page: 224 year: 2009 ident: 10.1016/j.actatropica.2023.107097_bib0059 article-title: Identification of Nearctic black flies using DNA barcodes (Diptera: Simuliidae) publication-title: Mol. Ecol. Resour. doi: 10.1111/j.1755-0998.2009.02648.x – volume: 202 year: 2020 ident: 10.1016/j.actatropica.2023.107097_bib0046 article-title: Temporal variation in diversity and community structure of preimaginal blackflies (Diptera: Simuliidae) in a tropical forest reserve in Malaysia publication-title: Acta Trop. doi: 10.1016/j.actatropica.2019.105275 – volume: 47 start-page: 221 issue: 1 year: 2008 ident: 10.1016/j.actatropica.2023.107097_bib0032 article-title: Explosive avian radiations and multi-directional dispersal across Wallacea: evidence from the Campephagidae and other Crown Corvida (Aves) publication-title: Mol. Phylogenet. Evol. doi: 10.1016/j.ympev.2008.01.017 – year: 1990 ident: 10.1016/j.actatropica.2023.107097_bib0012 – volume: 147 start-page: 915 issue: 2 year: 1997 ident: 10.1016/j.actatropica.2023.107097_bib0021 article-title: Statistical tests of neutrality of mutations against population growth, hitchhiking and background selection publication-title: Genetics doi: 10.1093/genetics/147.2.915 – volume: 276 start-page: 2359 issue: 1666 year: 2009 ident: 10.1016/j.actatropica.2023.107097_bib0006 article-title: New Guinea highland origin of a widespread arthropod supertramp publication-title: Proc. R. Soc. B Biol. Sci. doi: 10.1098/rspb.2009.0015 – volume: 10 start-page: 846 issue: 7 year: 2010 ident: 10.1016/j.actatropica.2023.107097_bib0002 article-title: Evolution, epidemiology, and population genetics of black flies (Diptera: Simuliidae). Infection publication-title: Genet. Evol. doi: 10.1016/j.meegid.2010.07.003 – volume: 27 start-page: 1659 issue: 7 year: 2010 ident: 10.1016/j.actatropica.2023.107097_bib0045 article-title: Revisiting the insect mitochondrial molecular clock: the mid-Aegean trench calibration publication-title: Mol. Biol. Evol. doi: 10.1093/molbev/msq051 – volume: 6 start-page: 1110 issue: 9 year: 2015 ident: 10.1016/j.actatropica.2023.107097_bib0036 article-title: PopART: full-feature software for haplotype network construction publication-title: Methods Ecol. Evol. doi: 10.1111/2041-210X.12410 |
| SSID | ssj0012752 |
| Score | 2.4018319 |
| Snippet | Mitochondrial cytochrome c oxidase subunit I (COI) sequences were utilized to infer the population genetic structure of Simulium (Gomphostilbia) atratum De... |
| SourceID | proquest pubmed crossref |
| SourceType | Aggregation Database Index Database Enrichment Source |
| StartPage | 107097 |
| SubjectTerms | gene flow genetic distance genetic structure genetic variation haplotypes Indonesia mitochondria oxidoreductases phylogeny Pleistocene epoch population growth Simulium |
| Title | Co-occurrence of dual lineages within Simulium (Gomphostilbia) atratum De Meijere in the Indonesian Archipelago along Wallace's Line |
| URI | https://www.ncbi.nlm.nih.gov/pubmed/38097150 https://www.proquest.com/docview/2902955132 https://www.proquest.com/docview/3040405599 |
| Volume | 250 |
| hasFullText | 1 |
| inHoldings | 1 |
| isFullTextHit | |
| isPrint | |
| link | http://utb.summon.serialssolutions.com/2.0.0/link/0/eLvHCXMwnV3da9swEBdZC6EvY-0-mn2hwmArwcXxl-zHkGxkox1jtCzdi5EsCRzSOCTOy_a6P3x3suy46wLdXpxgWZKT--l0d7oPQt4MuD8YZII5LleBA_pX4MTCk6CqxPGAuyKKTPjYxedochV8mobTTudnO7qkFGfZj7_GlfwPVeEe0BWjZP-Bss2gcAO-A33hChSG671oPCqcIstMhqXM6P5jDAYB9VJxTN2ANtYclm-OLlCbG2MRgOWPcR35XKCXbNLnmJ0W2sawvFU-UytVez5-xDofysRYmvS0SzVHnw0-x-pEjf2drc18bRl3mJW8X66KZcsNaKLMEdI1DDbNGzxewyuwrDBHQt83gudya50e2bAR-FT9MZq165ZzvjHsqQDgflP2vjVceEHt64z7TsVsY-Y7oH8FLQYK2qhbOeze4e2VmWEGOCu5_RFnWPz97G4fINPyxhDdjzFJVpXb9o_E2nXTA7LvMYZn_PvD0dfzL80hlMdCr0tOti6BO2Y-IN16rNvSzQ6VxYgul4_IQ6tz0GEFoEPSUYsj0r2wXhVH5NAy-DV9Z7OQnz4mv26BixaaIrhoDS5agYvW4IKubWidUgssOlbUAovC4wAsugUWbQGLGmBRC6y3azPTE3L14f3laOLYkh1O5odu6ShY-LANaAxXVq52tYx8JZKQcZ8xEHW1FHGciERLJgOuQVeFLSbSOmZCuqEU_lOyt4B3OCY0iGLlS-kngoPUHCUchFcv1JpLLl030z0S1391mtl89lhWZZ7WjouztEWwFAmWVgTrEa_puqySutyn00lNzxRYMJ6r8YUqNuvUS1wvwUJJ3u5nfNgsQTcKk6RHnlVgaKauwfN8Z8sLcrBdQS_JXrnaqFcgDJfitQXtbxlltKM |
| linkProvider | Elsevier |
| openUrl | ctx_ver=Z39.88-2004&ctx_enc=info%3Aofi%2Fenc%3AUTF-8&rfr_id=info%3Asid%2Fsummon.serialssolutions.com&rft_val_fmt=info%3Aofi%2Ffmt%3Akev%3Amtx%3Ajournal&rft.genre=article&rft.atitle=Co-occurrence+of+Dual+Lineages+within+Simulium+%28Gomphostilbia%29+atratum+De+Meijere+in+the+Indonesian+Archipelago+along+Wallace%27s+Line&rft.jtitle=Acta+tropica&rft.au=Hew%2C+Yan+Xin&rft.au=Ya%27cob%2C+Zubaidah&rft.au=Chen%2C+Chee+Dhang&rft.au=Lau%2C+Koon+Weng&rft.date=2024-02-01&rft.eissn=1873-6254&rft.spage=107097&rft_id=info:doi/10.1016%2Fj.actatropica.2023.107097&rft_id=info%3Apmid%2F38097150&rft.externalDocID=38097150 |
| thumbnail_l | http://covers-cdn.summon.serialssolutions.com/index.aspx?isbn=/lc.gif&issn=0001-706X&client=summon |
| thumbnail_m | http://covers-cdn.summon.serialssolutions.com/index.aspx?isbn=/mc.gif&issn=0001-706X&client=summon |
| thumbnail_s | http://covers-cdn.summon.serialssolutions.com/index.aspx?isbn=/sc.gif&issn=0001-706X&client=summon |