A genome screen for the development of sex-specific DNA markers in Saccharina japonica
Saccharina japonica is an important cultured marine brown alga and it has been the subject of intensive genetic improvement during its domestication and farming. However, there are limited credible and effective sex markers to identify the sex of gametophytes and sporophytes derived from normal hybr...
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| Published in | Journal of applied phycology Vol. 30; no. 2; pp. 1239 - 1246 |
|---|---|
| Main Authors | , , , , |
| Format | Journal Article |
| Language | English |
| Published |
Dordrecht
Springer Netherlands
01.04.2018
Springer Nature B.V |
| Subjects | |
| Online Access | Get full text |
| ISSN | 0921-8971 1573-5176 |
| DOI | 10.1007/s10811-017-1295-z |
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| Abstract | Saccharina japonica
is an important cultured marine brown alga and it has been the subject of intensive genetic improvement during its domestication and farming. However, there are limited credible and effective sex markers to identify the sex of gametophytes and sporophytes derived from normal hybridization or monogenesis. In the present study, the transcriptomic and genomic sequences of
S. japonica
were screened by 15 sex-determining region (SDR) genes from a model brown alga (
Ectocarpus
), and six cDNA sequences and their corresponding genomic sequences were identified. Thirteen primer pairs were designed from the coding region of six genomic sequences and subsequently tested on gametophytes of
S. japonica
. From these regions, four novel male-specific markers were developed, which derived from
S. japonica
genomic sequences JXRI01001736 and JXRI01002827, corresponding to a male-specific SDR gene and a gametologue SDR gene in
Ectocarpus
, respectively. In addition, an existing female marker (M_68_58_2) for
Macrocystis pyrifera
and
Undaria pinnatifida
, derived from the
Ectocarpus
SDR gene, could also be used as a female-specific marker for
S. japonica.
The results of the present study not only demonstrate an important new tool to determine the sex of gametophytes and distinguish between diploid sporophytes and partheno-sporophytes in breeding programmes but also provide insight into the sex-determination system for
S. japonica
, including the identification of sex chromosomes, SDR, and SDR genes and evolution of sex chromosomes. |
|---|---|
| AbstractList | Saccharina japonica
is an important cultured marine brown alga and it has been the subject of intensive genetic improvement during its domestication and farming. However, there are limited credible and effective sex markers to identify the sex of gametophytes and sporophytes derived from normal hybridization or monogenesis. In the present study, the transcriptomic and genomic sequences of
S. japonica
were screened by 15 sex-determining region (SDR) genes from a model brown alga (
Ectocarpus
), and six cDNA sequences and their corresponding genomic sequences were identified. Thirteen primer pairs were designed from the coding region of six genomic sequences and subsequently tested on gametophytes of
S. japonica
. From these regions, four novel male-specific markers were developed, which derived from
S. japonica
genomic sequences JXRI01001736 and JXRI01002827, corresponding to a male-specific SDR gene and a gametologue SDR gene in
Ectocarpus
, respectively. In addition, an existing female marker (M_68_58_2) for
Macrocystis pyrifera
and
Undaria pinnatifida
, derived from the
Ectocarpus
SDR gene, could also be used as a female-specific marker for
S. japonica.
The results of the present study not only demonstrate an important new tool to determine the sex of gametophytes and distinguish between diploid sporophytes and partheno-sporophytes in breeding programmes but also provide insight into the sex-determination system for
S. japonica
, including the identification of sex chromosomes, SDR, and SDR genes and evolution of sex chromosomes. Saccharina japonica is an important cultured marine brown alga and it has been the subject of intensive genetic improvement during its domestication and farming. However, there are limited credible and effective sex markers to identify the sex of gametophytes and sporophytes derived from normal hybridization or monogenesis. In the present study, the transcriptomic and genomic sequences of S. japonica were screened by 15 sex-determining region (SDR) genes from a model brown alga (Ectocarpus), and six cDNA sequences and their corresponding genomic sequences were identified. Thirteen primer pairs were designed from the coding region of six genomic sequences and subsequently tested on gametophytes of S. japonica. From these regions, four novel male-specific markers were developed, which derived from S. japonica genomic sequences JXRI01001736 and JXRI01002827, corresponding to a male-specific SDR gene and a gametologue SDR gene in Ectocarpus, respectively. In addition, an existing female marker (M_68_58_2) for Macrocystis pyrifera and Undaria pinnatifida, derived from the Ectocarpus SDR gene, could also be used as a female-specific marker for S. japonica. The results of the present study not only demonstrate an important new tool to determine the sex of gametophytes and distinguish between diploid sporophytes and partheno-sporophytes in breeding programmes but also provide insight into the sex-determination system for S. japonica, including the identification of sex chromosomes, SDR, and SDR genes and evolution of sex chromosomes. |
| Author | Zhang, Linan Cui, Cuiju Wu, Hao Li, Yan Li, Xiaojie |
| Author_xml | – sequence: 1 givenname: Linan surname: Zhang fullname: Zhang, Linan organization: Marine Science and Engineering College, Qingdao Agricultural University – sequence: 2 givenname: Cuiju surname: Cui fullname: Cui, Cuiju organization: National Engineering Science Research & Development Center of Algae and Sea Cucumbers of China, Provincial Key Laboratory of Genetic Improvement & Efficient Culture of Marine Algae of Shandong, Shandong Oriental Ocean Sci-tech Co., Ltd – sequence: 3 givenname: Yan surname: Li fullname: Li, Yan organization: National Engineering Science Research & Development Center of Algae and Sea Cucumbers of China, Provincial Key Laboratory of Genetic Improvement & Efficient Culture of Marine Algae of Shandong, Shandong Oriental Ocean Sci-tech Co., Ltd – sequence: 4 givenname: Hao surname: Wu fullname: Wu, Hao email: wuhaoqau@163.com organization: College of Food Science and Engineering, Qingdao Agricultural University – sequence: 5 givenname: Xiaojie surname: Li fullname: Li, Xiaojie email: yeslxj@sina.com organization: National Engineering Science Research & Development Center of Algae and Sea Cucumbers of China, Provincial Key Laboratory of Genetic Improvement & Efficient Culture of Marine Algae of Shandong, Shandong Oriental Ocean Sci-tech Co., Ltd |
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| CitedBy_id | crossref_primary_10_1186_s12870_021_03117_z crossref_primary_10_1186_s12864_025_11382_7 crossref_primary_10_1007_s00343_020_0070_1 crossref_primary_10_1016_j_aquaculture_2022_738256 crossref_primary_10_1007_s11802_023_5344_8 crossref_primary_10_1111_pre_12489 crossref_primary_10_1016_j_algal_2023_102978 crossref_primary_10_1111_raq_12483 crossref_primary_10_1007_s10811_024_03401_z crossref_primary_10_3390_genes11121503 crossref_primary_10_1016_j_aquaculture_2024_741142 crossref_primary_10_3389_fmars_2022_821603 crossref_primary_10_1111_jpy_13530 crossref_primary_10_1111_jpy_12821 crossref_primary_10_1093_aob_mcad173 |
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| Keywords | Gametophytes Partheno-sporophytes Phaeophyta Sex-specific marker |
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is an important cultured marine brown alga and it has been the subject of intensive genetic improvement during its domestication and... Saccharina japonica is an important cultured marine brown alga and it has been the subject of intensive genetic improvement during its domestication and... |
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| SubjectTerms | Algae Biological evolution Biomedical and Life Sciences Breeding breeding programs Chromosomes Complementary DNA Deoxyribonucleic acid diploidy DNA Domestication Ecology Ectocarpus evolution Evolutionary genetics Females Freshwater & Marine Ecology Gametophytes Gene sequencing Genes Genetic improvement genetic markers Genomes Genomics Hybridization hybridization probes Life Sciences Macrocystis pyrifera Males Markers Microalgae culture nucleotide sequences Plant Physiology Plant Sciences Saccharina japonica Sex Sex chromosomes Sex determination Sporophytes transcriptomics Undaria pinnatifida |
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| Title | A genome screen for the development of sex-specific DNA markers in Saccharina japonica |
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