Environmental DNA metabarcoding serves as a promising method for aquatic species monitoring and management: A review focused on its workflow, applications, challenges and prospects

Marine and freshwater biodiversity is under threat from both natural and manmade causes. Biological monitoring is currently a top priority for biodiversity protection. Given present limitations, traditional biological monitoring methods may not achieve the proposed monitoring aims. Environmental DNA...

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Published inMarine pollution bulletin Vol. 194; p. 115430
Main Authors Zhang, Miaolian, Zou, Yingtong, Xiao, Shan, Hou, Jing
Format Journal Article
LanguageEnglish
Published Elsevier Ltd 01.09.2023
Subjects
Biodiversity
Biological monitoring
eDNA metabarcoding
Endangered species
Environmental sample
Invasive species
eDNA metabarcoding
Invasive species
Endangered species
Biodiversity
Biological monitoring
Environmental sample
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Abstract Marine and freshwater biodiversity is under threat from both natural and manmade causes. Biological monitoring is currently a top priority for biodiversity protection. Given present limitations, traditional biological monitoring methods may not achieve the proposed monitoring aims. Environmental DNA metabarcoding technology reflects species information by capturing and extracting DNA from environmental samples, using molecular biology techniques to sequence and analyze the DNA, and comparing the obtained information with existing reference libraries to obtain species identification. However, its practical application has highlighted several limitations. This paper summarizes the main steps in the environmental application of eDNA metabarcoding technology in aquatic ecosystems, including the discovery of unknown species, the detection of invasive species, and evaluations of biodiversity. At present, with the rapid development of big data and artificial intelligence, certain advanced technologies and devices can be combined with environmental DNA metabarcoding technology to promote further development of aquatic species monitoring and management. [Display omitted] •The workflow of eDNA metabarcoding technology is summarized.•eDNA metabarcoding technology contributes to effectively biomonitoring.•Invasive species and endangered species are vital detection targets of eDNA method.•Limitations and issues exist in the application of eDNA metabarcoding technology.•eDNA metabarcoding technology is expected to be combined with other technologies.
AbstractList Marine and freshwater biodiversity is under threat from both natural and manmade causes. Biological monitoring is currently a top priority for biodiversity protection. Given present limitations, traditional biological monitoring methods may not achieve the proposed monitoring aims. Environmental DNA metabarcoding technology reflects species information by capturing and extracting DNA from environmental samples, using molecular biology techniques to sequence and analyze the DNA, and comparing the obtained information with existing reference libraries to obtain species identification. However, its practical application has highlighted several limitations. This paper summarizes the main steps in the environmental application of eDNA metabarcoding technology in aquatic ecosystems, including the discovery of unknown species, the detection of invasive species, and evaluations of biodiversity. At present, with the rapid development of big data and artificial intelligence, certain advanced technologies and devices can be combined with environmental DNA metabarcoding technology to promote further development of aquatic species monitoring and management. [Display omitted] •The workflow of eDNA metabarcoding technology is summarized.•eDNA metabarcoding technology contributes to effectively biomonitoring.•Invasive species and endangered species are vital detection targets of eDNA method.•Limitations and issues exist in the application of eDNA metabarcoding technology.•eDNA metabarcoding technology is expected to be combined with other technologies.
ArticleNumber 115430
Author Xiao, Shan
Zhang, Miaolian
Hou, Jing
Zou, Yingtong
Author_xml – sequence: 1
  givenname: Miaolian
  surname: Zhang
  fullname: Zhang, Miaolian
  organization: MOE Key Laboratory of Resources and Environmental Systems Optimization, College of Environmental Science and Engineering, North China Electric Power University, Beijing 102206, China
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  givenname: Yingtong
  surname: Zou
  fullname: Zou, Yingtong
  organization: State Key Joint Laboratory of Environment Simulation and Pollution Control, Research Center for Eco-Environmental Sciences, Chinese Academy of Sciences, Beijing 100085, China
– sequence: 3
  givenname: Shan
  surname: Xiao
  fullname: Xiao, Shan
  organization: MOE Key Laboratory of Resources and Environmental Systems Optimization, College of Environmental Science and Engineering, North China Electric Power University, Beijing 102206, China
– sequence: 4
  givenname: Jing
  surname: Hou
  fullname: Hou, Jing
  email: houjing@ncepu.edu.cn
  organization: MOE Key Laboratory of Resources and Environmental Systems Optimization, College of Environmental Science and Engineering, North China Electric Power University, Beijing 102206, China
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CitedBy_id crossref_primary_10_3389_fmars_2024_1276956
crossref_primary_10_1016_j_envres_2024_119174
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Invasive species
Endangered species
Biodiversity
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Environmental sample
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Snippet Marine and freshwater biodiversity is under threat from both natural and manmade causes. Biological monitoring is currently a top priority for biodiversity...
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SubjectTerms Biodiversity
Biological monitoring
eDNA metabarcoding
Endangered species
Environmental sample
Invasive species
Title Environmental DNA metabarcoding serves as a promising method for aquatic species monitoring and management: A review focused on its workflow, applications, challenges and prospects
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