Fast and Calibrationless Low-Rank Parallel Imaging Reconstruction Through Unrolled Deep Learning Estimation of Multi-Channel Spatial Support Maps
Low-rank technique has emerged as a powerful calibrationless alternative for parallel magnetic resonance (MR) imaging. Calibrationless low-rank reconstruction, such as low-rank modeling of local k-space neighborhoods (LORAKS), implicitly exploits both coil sensitivity modulations and the finite spat...
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Published in | IEEE transactions on medical imaging Vol. 42; no. 6; pp. 1644 - 1655 |
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Main Authors | , , , , , , , |
Format | Journal Article |
Language | English |
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United States
IEEE
01.06.2023
The Institute of Electrical and Electronics Engineers, Inc. (IEEE) |
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Online Access | Get full text |
ISSN | 0278-0062 1558-254X 1558-254X |
DOI | 10.1109/TMI.2023.3234968 |
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Abstract | Low-rank technique has emerged as a powerful calibrationless alternative for parallel magnetic resonance (MR) imaging. Calibrationless low-rank reconstruction, such as low-rank modeling of local k-space neighborhoods (LORAKS), implicitly exploits both coil sensitivity modulations and the finite spatial support constraint of MR images through an iterative low-rank matrix recovery process. Although powerful, this slow iteration process is computationally demanding and reconstruction requires empirical rank optimization, hampering its robust applications for high-resolution volume imaging. This paper proposes a fast and calibrationless low-rank reconstruction of undersampled multi-slice MR brain data, based on the finite spatial support constraint reformulation with a direct deep learning estimation of spatial support maps. The iteration process of low-rank reconstruction is unrolled into a complex-valued network by training on fully-sampled multi-slice axial brain datasets acquired from the same MR coil system. To utilize coil-subject geometric parameters available for datasets, the model minimizes a hybrid loss on two sets of spatial support maps, corresponding to brain data at the original slice locations as actually acquired and nearby locations within the standard reference coordinate. This deep learning framework was integrated with LORAKS reconstruction and was evaluated with publically available gradient-echo T1-weighted brain datasets. It directly produced high-quality multi-channel spatial support maps from undersampled data, enabling rapid reconstruction without iteration. Moreover, it led to effective reductions of artifacts and noise amplification at high acceleration. In summary, our proposed deep learning framework offers a new strategy to advance the existing calibrationless low-rank reconstruction, rendering it computationally efficient, simple, and robust in practice. |
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AbstractList | Low-rank technique has emerged as a powerful calibrationless alternative for parallel magnetic resonance (MR) imaging. Calibrationless low-rank reconstruction, such as low-rank modeling of local k-space neighborhoods (LORAKS), implicitly exploits both coil sensitivity modulations and the finite spatial support constraint of MR images through an iterative low-rank matrix recovery process. Although powerful, this slow iteration process is computationally demanding and reconstruction requires empirical rank optimization, hampering its robust applications for high-resolution volume imaging. This paper proposes a fast and calibrationless low-rank reconstruction of undersampled multi-slice MR brain data, based on the finite spatial support constraint reformulation with a direct deep learning estimation of spatial support maps. The iteration process of low-rank reconstruction is unrolled into a complex-valued network by training on fully-sampled multi-slice axial brain datasets acquired from the same MR coil system. To utilize coil-subject geometric parameters available for datasets, the model minimizes a hybrid loss on two sets of spatial support maps, corresponding to brain data at the original slice locations as actually acquired and nearby locations within the standard reference coordinate. This deep learning framework was integrated with LORAKS reconstruction and was evaluated with publically available gradient-echo T1-weighted brain datasets. It directly produced high-quality multi-channel spatial support maps from undersampled data, enabling rapid reconstruction without iteration. Moreover, it led to effective reductions of artifacts and noise amplification at high acceleration. In summary, our proposed deep learning framework offers a new strategy to advance the existing calibrationless low-rank reconstruction, rendering it computationally efficient, simple, and robust in practice. Low-rank technique has emerged as a powerful calibrationless alternative for parallel magnetic resonance (MR) imaging. Calibrationless low-rank reconstruction, such as low-rank modeling of local k-space neighborhoods (LORAKS), implicitly exploits both coil sensitivity modulations and the finite spatial support constraint of MR images through an iterative low-rank matrix recovery process. Although powerful, this slow iteration process is computationally demanding and reconstruction requires empirical rank optimization, hampering its robust applications for high-resolution volume imaging. This paper proposes a fast and calibrationless low-rank reconstruction of undersampled multi-slice MR brain data, based on the finite spatial support constraint reformulation with a direct deep learning estimation of spatial support maps. The iteration process of low-rank reconstruction is unrolled into a complex-valued network by training on fully-sampled multi-slice axial brain datasets acquired from the same MR coil system. To utilize coil-subject geometric parameters available for datasets, the model minimizes a hybrid loss on two sets of spatial support maps, corresponding to brain data at the original slice locations as actually acquired and nearby locations within the standard reference coordinate. This deep learning framework was integrated with LORAKS reconstruction and was evaluated with publically available gradient-echo T1-weighted brain datasets. It directly produced high-quality multi-channel spatial support maps from undersampled data, enabling rapid reconstruction without iteration. Moreover, it led to effective reductions of artifacts and noise amplification at high acceleration. In summary, our proposed deep learning framework offers a new strategy to advance the existing calibrationless low-rank reconstruction, rendering it computationally efficient, simple, and robust in practice.Low-rank technique has emerged as a powerful calibrationless alternative for parallel magnetic resonance (MR) imaging. Calibrationless low-rank reconstruction, such as low-rank modeling of local k-space neighborhoods (LORAKS), implicitly exploits both coil sensitivity modulations and the finite spatial support constraint of MR images through an iterative low-rank matrix recovery process. Although powerful, this slow iteration process is computationally demanding and reconstruction requires empirical rank optimization, hampering its robust applications for high-resolution volume imaging. This paper proposes a fast and calibrationless low-rank reconstruction of undersampled multi-slice MR brain data, based on the finite spatial support constraint reformulation with a direct deep learning estimation of spatial support maps. The iteration process of low-rank reconstruction is unrolled into a complex-valued network by training on fully-sampled multi-slice axial brain datasets acquired from the same MR coil system. To utilize coil-subject geometric parameters available for datasets, the model minimizes a hybrid loss on two sets of spatial support maps, corresponding to brain data at the original slice locations as actually acquired and nearby locations within the standard reference coordinate. This deep learning framework was integrated with LORAKS reconstruction and was evaluated with publically available gradient-echo T1-weighted brain datasets. It directly produced high-quality multi-channel spatial support maps from undersampled data, enabling rapid reconstruction without iteration. Moreover, it led to effective reductions of artifacts and noise amplification at high acceleration. In summary, our proposed deep learning framework offers a new strategy to advance the existing calibrationless low-rank reconstruction, rendering it computationally efficient, simple, and robust in practice. |
Author | Hu, Jiahao Zhao, Yujiao Xiao, Linfang Chen, Fei Yi, Zheyuan Wu, Ed X. Liu, Yilong Leong, Alex T. L. |
Author_xml | – sequence: 1 givenname: Zheyuan orcidid: 0000-0002-4833-4419 surname: Yi fullname: Yi, Zheyuan email: xiaoyaoqing1@gmail.com organization: Laboratory of Biomedical Imaging and Signal Processing and Department of Electrical and Electronic Engineering, The University of Hong Kong, Hong Kong, China – sequence: 2 givenname: Jiahao surname: Hu fullname: Hu, Jiahao email: hujh0919@gmail.com organization: Laboratory of Biomedical Imaging and Signal Processing and Department of Electrical and Electronic Engineering, The University of Hong Kong, Hong Kong, China – sequence: 3 givenname: Yujiao orcidid: 0000-0001-8063-887X surname: Zhao fullname: Zhao, Yujiao email: zhaoyj024@gmail.com organization: Laboratory of Biomedical Imaging and Signal Processing and Department of Electrical and Electronic Engineering, The University of Hong Kong, Hong Kong, China – sequence: 4 givenname: Linfang surname: Xiao fullname: Xiao, Linfang email: xiaolinfang92@gmail.com organization: Laboratory of Biomedical Imaging and Signal Processing and Department of Electrical and Electronic Engineering, The University of Hong Kong, Hong Kong, China – sequence: 5 givenname: Yilong orcidid: 0000-0001-9295-7982 surname: Liu fullname: Liu, Yilong email: loyalliu2008@gmail.com organization: Laboratory of Biomedical Imaging and Signal Processing and Department of Electrical and Electronic Engineering, The University of Hong Kong, Hong Kong, China – sequence: 6 givenname: Alex T. L. surname: Leong fullname: Leong, Alex T. L. email: alexleong31@gmail.com organization: Laboratory of Biomedical Imaging and Signal Processing and Department of Electrical and Electronic Engineering, The University of Hong Kong, Hong Kong, China – sequence: 7 givenname: Fei orcidid: 0000-0002-6988-492X surname: Chen fullname: Chen, Fei email: fchen@sustech.edu.cn organization: Department of Electrical and Electronic Engineering, Southern University of Science and Technology, Shenzhen, China – sequence: 8 givenname: Ed X. orcidid: 0000-0001-5581-1546 surname: Wu fullname: Wu, Ed X. email: ewu@eee.hku.hk organization: Laboratory of Biomedical Imaging and Signal Processing and Department of Electrical and Electronic Engineering, The University of Hong Kong, Hong Kong, China |
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Snippet | Low-rank technique has emerged as a powerful calibrationless alternative for parallel magnetic resonance (MR) imaging. Calibrationless low-rank reconstruction,... |
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SubjectTerms | Algorithms Brain Brain - diagnostic imaging Brain mapping Brain slice preparation Calibration Coils complex-valued network Convolution Datasets Deep Learning Estimation Fast calibrationless reconstruction High acceleration Image Processing, Computer-Assisted - methods Image reconstruction Image resolution Imaging Iterative methods low-rank parallel imaging Magnetic resonance imaging Magnetic Resonance Imaging - methods Neuroimaging Optimization Robustness (mathematics) Sensitivity Spatial discrimination learning spatial support maps |
Title | Fast and Calibrationless Low-Rank Parallel Imaging Reconstruction Through Unrolled Deep Learning Estimation of Multi-Channel Spatial Support Maps |
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