Genome-wide identification and expression analysis reveal the role of histone methyltransferase and demethylase genes in heat stress response in potato (Solanum tuberosum L.)
Potato (Solanum tuberosum L.), the third most important non-cereal crop, is sensitive to high temperature. Histone modifications have been known to regulate various abiotic stress responses. However, the role of histone methyltransferases and demethylases remain unexplored in potato under heat stres...
Saved in:
| Published in | Biochimica et biophysica acta. General subjects Vol. 1868; no. 1; p. 130507 |
|---|---|
| Main Authors | , |
| Format | Journal Article |
| Language | English |
| Published |
Netherlands
01.01.2024
|
| Subjects | |
| Online Access | Get full text |
| ISSN | 0304-4165 1872-8006 1872-8006 |
| DOI | 10.1016/j.bbagen.2023.130507 |
Cover
Loading…
| Abstract | Potato (Solanum tuberosum L.), the third most important non-cereal crop, is sensitive to high temperature. Histone modifications have been known to regulate various abiotic stress responses. However, the role of histone methyltransferases and demethylases remain unexplored in potato under heat stress.
Potato genome database was used for genome-wide analysis of StPRMT and StHDMA gene families, which were further characterized by analyzing gene structure, conserved motif, domain organization, sub-cellular localization, promoter region and phylogenetic relationships. Additionally, expression profiling under high-temperature stress in leaf and stolon tissue of heat contrasting potato genotypes was done to study their role in response to high temperature stress.
The genome-wide analysis led to identification of nine StPRMT and eleven StHDMA genes. Structural analysis, including conserved motifs, exon/intron structure and phylogenetic relationships classified StPRMT and StHDMA gene families into two classes viz. Class I and Class II. A variety of cis-regulatory elements were explored in the promoter region associated with light, developmental, hormonal and stress responses. Prediction of sub-cellular localization of StPRMT proteins revealed their occurrence in nucleus and cytoplasm, whereas StHDMA proteins were observed in different sub-cellular compartments. Furthermore, expression profiling of StPRMT and StHDMA gene family members revealed genes responding to heat stress. Heat-inducible expression of StPRMT1, StPRMT3, StPRMT4 and StPRMT5 in leaf and stolon tissues of HS and HT cultivar indicated them as probable candidates for enhancing thermotolerance in potato. However, StHDMAs responded dynamically in leaf and stolon tissue of heat contrasting genotypes under high temperature.
The current study presents a detailed analysis of histone modifiers in potato and indicates their role as an important epigenetic regulators modulating heat tolerance.
Understanding epigenetic mechanisms underlying heat tolerance in potato will contribute towards breeding of thermotolerant potato varieties. |
|---|---|
| AbstractList | Potato (Solanum tuberosum L.), the third most important non-cereal crop, is sensitive to high temperature. Histone modifications have been known to regulate various abiotic stress responses. However, the role of histone methyltransferases and demethylases remain unexplored in potato under heat stress.BACKGROUNDPotato (Solanum tuberosum L.), the third most important non-cereal crop, is sensitive to high temperature. Histone modifications have been known to regulate various abiotic stress responses. However, the role of histone methyltransferases and demethylases remain unexplored in potato under heat stress.Potato genome database was used for genome-wide analysis of StPRMT and StHDMA gene families, which were further characterized by analyzing gene structure, conserved motif, domain organization, sub-cellular localization, promoter region and phylogenetic relationships. Additionally, expression profiling under high-temperature stress in leaf and stolon tissue of heat contrasting potato genotypes was done to study their role in response to high temperature stress.METHODSPotato genome database was used for genome-wide analysis of StPRMT and StHDMA gene families, which were further characterized by analyzing gene structure, conserved motif, domain organization, sub-cellular localization, promoter region and phylogenetic relationships. Additionally, expression profiling under high-temperature stress in leaf and stolon tissue of heat contrasting potato genotypes was done to study their role in response to high temperature stress.The genome-wide analysis led to identification of nine StPRMT and eleven StHDMA genes. Structural analysis, including conserved motifs, exon/intron structure and phylogenetic relationships classified StPRMT and StHDMA gene families into two classes viz. Class I and Class II. A variety of cis-regulatory elements were explored in the promoter region associated with light, developmental, hormonal and stress responses. Prediction of sub-cellular localization of StPRMT proteins revealed their occurrence in nucleus and cytoplasm, whereas StHDMA proteins were observed in different sub-cellular compartments. Furthermore, expression profiling of StPRMT and StHDMA gene family members revealed genes responding to heat stress. Heat-inducible expression of StPRMT1, StPRMT3, StPRMT4 and StPRMT5 in leaf and stolon tissues of HS and HT cultivar indicated them as probable candidates for enhancing thermotolerance in potato. However, StHDMAs responded dynamically in leaf and stolon tissue of heat contrasting genotypes under high temperature.RESULTSThe genome-wide analysis led to identification of nine StPRMT and eleven StHDMA genes. Structural analysis, including conserved motifs, exon/intron structure and phylogenetic relationships classified StPRMT and StHDMA gene families into two classes viz. Class I and Class II. A variety of cis-regulatory elements were explored in the promoter region associated with light, developmental, hormonal and stress responses. Prediction of sub-cellular localization of StPRMT proteins revealed their occurrence in nucleus and cytoplasm, whereas StHDMA proteins were observed in different sub-cellular compartments. Furthermore, expression profiling of StPRMT and StHDMA gene family members revealed genes responding to heat stress. Heat-inducible expression of StPRMT1, StPRMT3, StPRMT4 and StPRMT5 in leaf and stolon tissues of HS and HT cultivar indicated them as probable candidates for enhancing thermotolerance in potato. However, StHDMAs responded dynamically in leaf and stolon tissue of heat contrasting genotypes under high temperature.The current study presents a detailed analysis of histone modifiers in potato and indicates their role as an important epigenetic regulators modulating heat tolerance.CONCLUSIONThe current study presents a detailed analysis of histone modifiers in potato and indicates their role as an important epigenetic regulators modulating heat tolerance.Understanding epigenetic mechanisms underlying heat tolerance in potato will contribute towards breeding of thermotolerant potato varieties.GENERAL SIGNIFICANCEUnderstanding epigenetic mechanisms underlying heat tolerance in potato will contribute towards breeding of thermotolerant potato varieties. Potato (Solanum tuberosum L.), the third most important non-cereal crop, is sensitive to high temperature. Histone modifications have been known to regulate various abiotic stress responses. However, the role of histone methyltransferases and demethylases remain unexplored in potato under heat stress. Potato genome database was used for genome-wide analysis of StPRMT and StHDMA gene families, which were further characterized by analyzing gene structure, conserved motif, domain organization, sub-cellular localization, promoter region and phylogenetic relationships. Additionally, expression profiling under high-temperature stress in leaf and stolon tissue of heat contrasting potato genotypes was done to study their role in response to high temperature stress. The genome-wide analysis led to identification of nine StPRMT and eleven StHDMA genes. Structural analysis, including conserved motifs, exon/intron structure and phylogenetic relationships classified StPRMT and StHDMA gene families into two classes viz. Class I and Class II. A variety of cis-regulatory elements were explored in the promoter region associated with light, developmental, hormonal and stress responses. Prediction of sub-cellular localization of StPRMT proteins revealed their occurrence in nucleus and cytoplasm, whereas StHDMA proteins were observed in different sub-cellular compartments. Furthermore, expression profiling of StPRMT and StHDMA gene family members revealed genes responding to heat stress. Heat-inducible expression of StPRMT1, StPRMT3, StPRMT4 and StPRMT5 in leaf and stolon tissues of HS and HT cultivar indicated them as probable candidates for enhancing thermotolerance in potato. However, StHDMAs responded dynamically in leaf and stolon tissue of heat contrasting genotypes under high temperature. The current study presents a detailed analysis of histone modifiers in potato and indicates their role as an important epigenetic regulators modulating heat tolerance. Understanding epigenetic mechanisms underlying heat tolerance in potato will contribute towards breeding of thermotolerant potato varieties. Potato (Solanum tuberosum L.), the third most important non-cereal crop, is sensitive to high temperature. Histone modifications have been known to regulate various abiotic stress responses. However, the role of histone methyltransferases and demethylases remain unexplored in potato under heat stress. Potato genome database was used for genome-wide analysis of StPRMT and StHDMA gene families, which were further characterized by analyzing gene structure, conserved motif, domain organization, sub-cellular localization, promoter region and phylogenetic relationships. Additionally, expression profiling under high-temperature stress in leaf and stolon tissue of heat contrasting potato genotypes was done to study their role in response to high temperature stress. The genome-wide analysis led to identification of nine StPRMT and eleven StHDMA genes. Structural analysis, including conserved motifs, exon/intron structure and phylogenetic relationships classified StPRMT and StHDMA gene families into two classes viz. Class I and Class II. A variety of cis-regulatory elements were explored in the promoter region associated with light, developmental, hormonal and stress responses. Prediction of sub-cellular localization of StPRMT proteins revealed their occurrence in nucleus and cytoplasm, whereas StHDMA proteins were observed in different sub-cellular compartments. Furthermore, expression profiling of StPRMT and StHDMA gene family members revealed genes responding to heat stress. Heat-inducible expression of StPRMT1, StPRMT3, StPRMT4 and StPRMT5 in leaf and stolon tissues of HS and HT cultivar indicated them as probable candidates for enhancing thermotolerance in potato. However, StHDMAs responded dynamically in leaf and stolon tissue of heat contrasting genotypes under high temperature. The current study presents a detailed analysis of histone modifiers in potato and indicates their role as an important epigenetic regulators modulating heat tolerance. Understanding epigenetic mechanisms underlying heat tolerance in potato will contribute towards breeding of thermotolerant potato varieties. |
| ArticleNumber | 130507 |
| Author | Zinta, Gaurav Mali, Surbhi |
| Author_xml | – sequence: 1 givenname: Surbhi surname: Mali fullname: Mali, Surbhi – sequence: 2 givenname: Gaurav surname: Zinta fullname: Zinta, Gaurav |
| BackLink | https://www.ncbi.nlm.nih.gov/pubmed/37925032$$D View this record in MEDLINE/PubMed |
| BookMark | eNqFUU1vFSEUJabGvlb_gTEs62JGPubTnWm0mryki9Y1geHi42UGRmCq70_1N5bXaTcuLAnh3ss5JwfOGTpx3gFC7ykpKaHNp32plPwFrmSE8ZJyUpP2FdrQrmVFR0hzgjaEk6qoaFOforMY9ySvuq_foFPe9qwmnG3Q_RU4P0Hxx2rAebtkjR1kst5h6TSGv3OAGNdWjodoIw5wB3LEaQc4-BGwN3hnY8r28ARpdxhTkC4aCDLCo4iGdX7ss2OI2Dq8A5lwTEf1rBhn7_Jtns8-yeTxxY0fpVsmnBYFwcdcbcuPb9FrI8cI757Oc_Tz29fby-_F9vrqx-WXbTHwiqRi0G3Fq6Y2DDqllOl7BW0j9VBDp4E2tKW9MtJktDZ6ML00hGWS7kBS0nJ-ji5W3Tn43wvEJCYbBxizJfBLFJzWFe2anvYvQlnXNZz1bVVl6Icn6KIm0GIOdpLhIJ7jyIDPK2DIL44BjBhsegwjf6kdBSXimL3YizV7ccxerNlncvUP-Vn_v7QHu6q6Hg |
| CitedBy_id | crossref_primary_10_3390_plants13212996 crossref_primary_10_1016_j_bbagen_2024_130708 |
| Cites_doi | 10.3390/ijms232112793 10.1093/nar/28.1.231 10.1002/tcr.201800082 10.1038/sj.emboj.7601647 10.1186/s12864-021-08245-2 10.3389/fpls.2022.933740 10.1093/plphys/kiab409 10.1093/plphys/kiad493 10.1186/s12870-018-1388-0 10.1105/tpc.107.052373 10.3389/fpls.2023.1151057 10.1111/j.0031-9317.2004.0273.x 10.1093/bioinformatics/btu817 10.3390/plants11162077 10.1038/sj.embor.7401111 10.3389/fpls.2016.01800 10.1093/pcp/pcv098 10.1007/s00344-022-10761-8 10.1111/j.1365-313X.2011.04534.x 10.1186/1471-2164-14-57 10.1006/meth.2001.1262 10.3389/fpls.2017.00639 10.1007/s13258-021-01147-3 10.1186/s13059-017-1235-x 10.1104/pp.19.00416 10.1080/15592324.2021.1950445 10.3390/plants9111617 10.3389/fpls.2015.00607 10.3389/fbinf.2022.818619 10.1016/S0960-9822(03)00243-4 10.1016/j.molcel.2005.04.003 10.1093/molbev/msw054 10.1038/nature04433 10.1002/mrd.22024 10.1371/journal.pone.0022664 10.1186/s13059-019-1731-2 10.1007/s00018-006-6274-5 10.1080/07388551.2016.1274876 10.3390/plants11030322 10.1093/nar/30.1.325 10.1146/annurev.arplant.043008.091939 10.3389/fpls.2019.00800 10.1016/j.cell.2007.02.005 10.1016/j.cell.2004.12.012 10.1038/s41438-021-00619-7 10.1016/j.bbapap.2006.08.008 10.1093/jxb/eraa468 10.4061/2011/163827 10.1104/pp.108.124727 10.1104/pp.19.00596 10.3389/fpls.2018.01228 10.1007/s00709-019-01364-4 10.1093/nar/gkg563 10.1590/1678-4685-gmb-2018-0141 10.1210/er.2004-0008 10.1104/pp.107.099531 10.1186/s12870-021-03332-8 10.1186/s12870-020-02618-7 10.1105/tpc.110.081356 |
| ContentType | Journal Article |
| Copyright | Copyright © 2023. Published by Elsevier B.V. |
| Copyright_xml | – notice: Copyright © 2023. Published by Elsevier B.V. |
| DBID | AAYXX CITATION NPM 7X8 7S9 L.6 |
| DOI | 10.1016/j.bbagen.2023.130507 |
| DatabaseName | CrossRef PubMed MEDLINE - Academic AGRICOLA AGRICOLA - Academic |
| DatabaseTitle | CrossRef PubMed MEDLINE - Academic AGRICOLA AGRICOLA - Academic |
| DatabaseTitleList | MEDLINE - Academic AGRICOLA PubMed |
| Database_xml | – sequence: 1 dbid: NPM name: PubMed url: https://proxy.k.utb.cz/login?url=http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=PubMed sourceTypes: Index Database |
| DeliveryMethod | fulltext_linktorsrc |
| Discipline | Chemistry Biology |
| EISSN | 1872-8006 |
| ExternalDocumentID | 37925032 10_1016_j_bbagen_2023_130507 |
| Genre | Journal Article |
| GroupedDBID | --- --K --M .~1 0R~ 1B1 1RT 1~. 1~5 23N 3O- 4.4 457 4G. 53G 5GY 5RE 5VS 7-5 71M 8P~ 9JM AAEDT AAEDW AAHBH AAIKJ AAKOC AALRI AAOAW AAQFI AAQXK AATTM AAXKI AAXUO AAYWO AAYXX ABEFU ABFNM ABGSF ABMAC ABUDA ABWVN ABXDB ACDAQ ACIUM ACRLP ACRPL ACVFH ADBBV ADCNI ADEZE ADMUD ADNMO ADUVX AEBSH AEHWI AEIPS AEKER AEUPX AFJKZ AFPUW AFTJW AFXIZ AGCQF AGHFR AGQPQ AGRDE AGRNS AGUBO AGYEJ AHHHB AIEXJ AIGII AIIUN AIKHN AITUG AKBMS AKRWK AKYEP ALMA_UNASSIGNED_HOLDINGS AMRAJ ANKPU APXCP ASPBG AVWKF AXJTR AZFZN BKOJK BLXMC BNPGV CITATION CS3 EBS EFJIC EJD EO8 EO9 EP2 EP3 FDB FEDTE FGOYB FIRID FNPLU FYGXN G-2 G-Q GBLVA HLW HVGLF HZ~ IHE J1W KOM LX3 M41 MO0 N9A O-L O9- OAUVE OHT OZT P-8 P-9 PC. Q38 R2- ROL RPZ SBG SCC SDF SDG SDP SES SEW SPCBC SSH SSU SSZ T5K UQL WH7 WUQ XJT XPP ~G- AACTN NPM 7X8 7S9 EFKBS L.6 |
| ID | FETCH-LOGICAL-c340t-cd743465f2e8bbbf99be76adc5e8de161719bfafc34dfdcf9af02cd7d8ea10733 |
| ISSN | 0304-4165 1872-8006 |
| IngestDate | Tue Aug 05 09:28:35 EDT 2025 Fri Jul 11 05:31:41 EDT 2025 Thu Apr 03 07:00:34 EDT 2025 Thu Apr 24 23:09:07 EDT 2025 Tue Jul 01 00:22:18 EDT 2025 |
| IsPeerReviewed | true |
| IsScholarly | true |
| Issue | 1 |
| Keywords | Epigenetics Climate change Potato Thermotolerance Histone methylation and demethylation High temperature stress |
| Language | English |
| License | Copyright © 2023. Published by Elsevier B.V. |
| LinkModel | OpenURL |
| MergedId | FETCHMERGED-LOGICAL-c340t-cd743465f2e8bbbf99be76adc5e8de161719bfafc34dfdcf9af02cd7d8ea10733 |
| Notes | ObjectType-Article-1 SourceType-Scholarly Journals-1 ObjectType-Feature-2 content type line 23 |
| PMID | 37925032 |
| PQID | 2886329744 |
| PQPubID | 23479 |
| ParticipantIDs | proquest_miscellaneous_3154186919 proquest_miscellaneous_2886329744 pubmed_primary_37925032 crossref_citationtrail_10_1016_j_bbagen_2023_130507 crossref_primary_10_1016_j_bbagen_2023_130507 |
| ProviderPackageCode | CITATION AAYXX |
| PublicationCentury | 2000 |
| PublicationDate | 2024-01-00 2024-Jan 20240101 |
| PublicationDateYYYYMMDD | 2024-01-01 |
| PublicationDate_xml | – month: 01 year: 2024 text: 2024-01-00 |
| PublicationDecade | 2020 |
| PublicationPlace | Netherlands |
| PublicationPlace_xml | – name: Netherlands |
| PublicationTitle | Biochimica et biophysica acta. General subjects |
| PublicationTitleAlternate | Biochim Biophys Acta Gen Subj |
| PublicationYear | 2024 |
| References | Qian (10.1016/j.bbagen.2023.130507_bb0020) 2006; 63 Ling (10.1016/j.bbagen.2023.130507_bb0265) 2022; 23 Malankar (10.1016/j.bbagen.2023.130507_bb0350) 2023 Meller (10.1016/j.bbagen.2023.130507_bb0195) 2018; 9 Livak (10.1016/j.bbagen.2023.130507_bb0250) 2001; 25 Panara (10.1016/j.bbagen.2023.130507_bb0255) 2022; 11 Pajoro (10.1016/j.bbagen.2023.130507_bb0340) 2017; 18 Lopez (10.1016/j.bbagen.2023.130507_bb0125) 2022; 11 Chen (10.1016/j.bbagen.2023.130507_bb0225) 2018; 289660 Goel (10.1016/j.bbagen.2023.130507_bb0310) 2023; 14 Zhang (10.1016/j.bbagen.2023.130507_bb0085) 2011; 23 Borchetia (10.1016/j.bbagen.2023.130507_bb0110) 2023; 42 Alvarez-Venegas (10.1016/j.bbagen.2023.130507_bb0325) 2003; 13 Zhang (10.1016/j.bbagen.2023.130507_bb0305) 2020; 9 Kondhare (10.1016/j.bbagen.2023.130507_bb0170) 2021; 187 Hung (10.1016/j.bbagen.2023.130507_bb0270) 2018; 46 Jing (10.1016/j.bbagen.2023.130507_bb0330) 2019; 181 Han (10.1016/j.bbagen.2023.130507_bb0010) 2016; 7 Dutta (10.1016/j.bbagen.2023.130507_bb0160) 2023 Dutt (10.1016/j.bbagen.2023.130507_bb0155) 2017; 37 Huang (10.1016/j.bbagen.2023.130507_bb0280) 2019; 10 Mazzoleni (10.1016/j.bbagen.2023.130507_bb0260) 2015; 56 Gasteiger (10.1016/j.bbagen.2023.130507_bb0215) 2003; 31 Blackwell (10.1016/j.bbagen.2023.130507_bb0060) 2012; 79 Kumar (10.1016/j.bbagen.2023.130507_bb0345) 2020; 182 Lescot (10.1016/j.bbagen.2023.130507_bb0235) 2002; 30 Davis (10.1016/j.bbagen.2023.130507_bb0245) 2022; 2 Ding (10.1016/j.bbagen.2023.130507_bb0335) 2011; 66 Zeng (10.1016/j.bbagen.2023.130507_bb0190) 2019; 20 Bedford (10.1016/j.bbagen.2023.130507_bb0050) 2005; 18 Kumar (10.1016/j.bbagen.2023.130507_bb0230) 2016; 33 Hou (10.1016/j.bbagen.2023.130507_bb0320) 2019; 256 Zhou (10.1016/j.bbagen.2023.130507_bb0135) 2022; 23 Mali (10.1016/j.bbagen.2023.130507_bb0185) 2023 Mali (10.1016/j.bbagen.2023.130507_bb0275) 2023; 34 Mali (10.1016/j.bbagen.2023.130507_bb0150) 2022 Wang (10.1016/j.bbagen.2023.130507_bb0080) 2007; 26 Yu (10.1016/j.bbagen.2023.130507_bb0240) 2014; 9 Niu (10.1016/j.bbagen.2023.130507_bb0090) 2007; 8 David Law (10.1016/j.bbagen.2023.130507_bb0200) 2004; 120 Fan (10.1016/j.bbagen.2023.130507_bb0115) 2018; 18 Xu (10.1016/j.bbagen.2023.130507_bb0130) 2015; 6 Liang (10.1016/j.bbagen.2023.130507_bb0300) 2021; 43 Kouzarides (10.1016/j.bbagen.2023.130507_bb0005) 2007; 128 Pahlich (10.1016/j.bbagen.2023.130507_bb0055) 2006; 1764 Hirsch (10.1016/j.bbagen.2023.130507_bb0205) 2014; 7 Tsukada (10.1016/j.bbagen.2023.130507_bb0035) 2006; 439 Lee (10.1016/j.bbagen.2023.130507_bb0070) 2005; 26 Fulton (10.1016/j.bbagen.2023.130507_bb0045) 2018; 18 Wang (10.1016/j.bbagen.2023.130507_bb0295) 2020; 20 Ai (10.1016/j.bbagen.2023.130507_bb0175) 2021; 8 Liu (10.1016/j.bbagen.2023.130507_bb0015) 2010; 61 Peng (10.1016/j.bbagen.2023.130507_bb0145) 2017; 8 Shao (10.1016/j.bbagen.2023.130507_bb0315) 2023 Jiang (10.1016/j.bbagen.2023.130507_bb0095) 2007; 19 Li (10.1016/j.bbagen.2023.130507_bb0140) 2020; 43 Shi (10.1016/j.bbagen.2023.130507_bb0040) 2004; 119 Ahmad (10.1016/j.bbagen.2023.130507_bb0025) 2011; 6 Kumar (10.1016/j.bbagen.2023.130507_bb0180) 2021; 72 Schultz (10.1016/j.bbagen.2023.130507_bb0210) 2000; 28 Luo (10.1016/j.bbagen.2023.130507_bb0030) 2014; 32 Niu (10.1016/j.bbagen.2023.130507_bb0100) 2008; 148 Aiese Cigliano (10.1016/j.bbagen.2023.130507_bb0120) 2013; 14 Yu (10.1016/j.bbagen.2023.130507_bb0065) 2011; 2011 Hu (10.1016/j.bbagen.2023.130507_bb0220) 2015; 31 Dutta (10.1016/j.bbagen.2023.130507_bb0165) 2022; 13 Pei (10.1016/j.bbagen.2023.130507_bb0075) 2007; 144 Saidi (10.1016/j.bbagen.2023.130507_bb0290) 2019; 27 Yamaguchi (10.1016/j.bbagen.2023.130507_bb0355) 2021; 16 Zheng (10.1016/j.bbagen.2023.130507_bb0105) 2021; 21 Wang (10.1016/j.bbagen.2023.130507_bb0285) 2016; 7 |
| References_xml | – volume: 23 start-page: 12793 year: 2022 ident: 10.1016/j.bbagen.2023.130507_bb0265 article-title: Genome-wide identification of maize protein arginine methyltransferase genes and functional analysis of ZmPRMT1 reveal essential roles in Arabidopsis flowering regulation and abiotic stress tolerance publication-title: Int. J. Mol. Sci. doi: 10.3390/ijms232112793 – volume: 28 start-page: 231 year: 2000 ident: 10.1016/j.bbagen.2023.130507_bb0210 article-title: SMART: a web-based tool for the study of genetically mobile domains publication-title: Nucleic Acids Res. doi: 10.1093/nar/28.1.231 – volume: 18 start-page: 1792 year: 2018 ident: 10.1016/j.bbagen.2023.130507_bb0045 article-title: Mechanisms and inhibitors of histone arginine methylation publication-title: Chem. Rec. doi: 10.1002/tcr.201800082 – volume: 26 start-page: 1934 year: 2007 ident: 10.1016/j.bbagen.2023.130507_bb0080 article-title: SKB1-mediated symmetric dimethylation of histone H4R3 controls flowering time in Arabidopsis publication-title: EMBO J. doi: 10.1038/sj.emboj.7601647 – volume: 23 start-page: 1 year: 2022 ident: 10.1016/j.bbagen.2023.130507_bb0135 article-title: Identification and expression analysis of histone modification gene (HM) family during somatic embryogenesis of oil palm publication-title: BMC Genomics doi: 10.1186/s12864-021-08245-2 – volume: 13 year: 2022 ident: 10.1016/j.bbagen.2023.130507_bb0165 article-title: The interplay of DNA methyltransferases and demethylases with tuberization genes in potato (Solanum tuberosum L.) genotypes under high temperature publication-title: Front. Plant Sci. doi: 10.3389/fpls.2022.933740 – volume: 187 start-page: 1071 year: 2021 ident: 10.1016/j.bbagen.2023.130507_bb0170 article-title: Development of aerial and belowground tubers in potato is governed by photoperiod and epigenetic mechanism publication-title: Plant Physiol. doi: 10.1093/plphys/kiab409 – year: 2023 ident: 10.1016/j.bbagen.2023.130507_bb0350 article-title: The phasiRNA siRD29 (−) regulates GIBBERELLIN 3-OXIDASE 3 during stolon-to-tuber transitions in potato publication-title: Plant Physiol. doi: 10.1093/plphys/kiad493 – volume: 18 start-page: 1 year: 2018 ident: 10.1016/j.bbagen.2023.130507_bb0115 article-title: Identification and characterization of histone modification gene family reveal their critical responses to flower induction in apple publication-title: BMC Plant Biol. doi: 10.1186/s12870-018-1388-0 – start-page: 1 year: 2023 ident: 10.1016/j.bbagen.2023.130507_bb0160 article-title: Transcriptional and post-transcriptional regulation of Tuberization in potato (Solanum tuberosum L.) publication-title: J. Plant Growth Regul. – volume: 7 start-page: 7 year: 2016 ident: 10.1016/j.bbagen.2023.130507_bb0285 article-title: Genome-wide identification and comparative analysis of cytosine-5 DNA methyltransferase and demethylase families in wild and cultivated peanut publication-title: Front. Plant Sci. – volume: 19 start-page: 2975 year: 2007 ident: 10.1016/j.bbagen.2023.130507_bb0095 article-title: Arabidopsis relatives of the human lysine-specific Demethylase1 repress the expression of FWA and FLOWERING LOCUS C and thus promote the floral transition publication-title: Plant Cell doi: 10.1105/tpc.107.052373 – volume: 14 start-page: 1151057 year: 2023 ident: 10.1016/j.bbagen.2023.130507_bb0310 article-title: Functional divergence of heat shock factors (Hsfs) during heat stress and recovery at the tissue and developmental scales in C4 grain amaranth (Amaranthus hypochondriacus) publication-title: Front. Plant Sci. doi: 10.3389/fpls.2023.1151057 – volume: 120 start-page: 642 year: 2004 ident: 10.1016/j.bbagen.2023.130507_bb0200 article-title: Changes in histone H3 and H4 multi-acetylation during natural and forced dormancy break in potato tubers publication-title: Physiol. Plant. doi: 10.1111/j.0031-9317.2004.0273.x – volume: 31 start-page: 1296 year: 2015 ident: 10.1016/j.bbagen.2023.130507_bb0220 article-title: GSDS 2.0: an upgraded gene feature visualization server publication-title: Bioinform. doi: 10.1093/bioinformatics/btu817 – volume: 11 start-page: 2077 year: 2022 ident: 10.1016/j.bbagen.2023.130507_bb0255 article-title: Genome-wide identification and spatial expression analysis of histone modification gene families in the rubber dandelion Taraxacum kok-saghyz publication-title: Plants doi: 10.3390/plants11162077 – volume: 8 start-page: 1190 year: 2007 ident: 10.1016/j.bbagen.2023.130507_bb0090 article-title: Regulation of flowering time by the protein arginine methyltransferase AtPRMT10 publication-title: EMBO Rep. doi: 10.1038/sj.embor.7401111 – volume: 7 start-page: 1800 year: 2016 ident: 10.1016/j.bbagen.2023.130507_bb0010 article-title: Genome-wide analysis of soybean JmjC domain-containing proteins suggests evolutionary conservation following whole-genome duplication publication-title: Front. Plant Sci. doi: 10.3389/fpls.2016.01800 – volume: 56 start-page: 1697 year: 2015 ident: 10.1016/j.bbagen.2023.130507_bb0260 article-title: Dual targeting of the protein methyltransferase PrmA contributes to both chloroplastic and mitochondrial ribosomal protein L11 methylation in Arabidopsis publication-title: Plant Cell Physiol. doi: 10.1093/pcp/pcv098 – volume: 42 start-page: 2960 year: 2023 ident: 10.1016/j.bbagen.2023.130507_bb0110 article-title: Genome-wide identification of histone modification (HM) gene family and their expression patterns under abiotic stress and different developmental stages of tea (Camellia assamica) publication-title: J. Plant Growth Regul. doi: 10.1007/s00344-022-10761-8 – volume: 66 start-page: 735 year: 2011 ident: 10.1016/j.bbagen.2023.130507_bb0335 article-title: The Arabidopsis trithorax-like factor ATX1 functions in dehydration stress responses via ABA-dependent and ABA-independent pathways publication-title: Plant J. doi: 10.1111/j.1365-313X.2011.04534.x – volume: 14 start-page: 1 year: 2013 ident: 10.1016/j.bbagen.2023.130507_bb0120 article-title: Genome-wide analysis of histone modifiers in tomato: gaining an insight into their developmental roles publication-title: BMC Genomics doi: 10.1186/1471-2164-14-57 – volume: 25 start-page: 402 year: 2001 ident: 10.1016/j.bbagen.2023.130507_bb0250 article-title: Analysis of relative gene expression data using real-time quantitative PCR and the 2− ΔΔCT method publication-title: Methods doi: 10.1006/meth.2001.1262 – volume: 8 start-page: 639 year: 2017 ident: 10.1016/j.bbagen.2023.130507_bb0145 article-title: Genome-wide identification of histone modifiers and their expression patterns during fruit abscission in litchi publication-title: Front. Plant Sci. doi: 10.3389/fpls.2017.00639 – volume: 43 start-page: 1445 year: 2021 ident: 10.1016/j.bbagen.2023.130507_bb0300 article-title: Identification of HvLRX, a new dehydration and light responsive gene in Tibetan hulless barley (Hordeum vulgare var. nudum) publication-title: Genes Genom. doi: 10.1007/s13258-021-01147-3 – volume: 7 year: 2014 ident: 10.1016/j.bbagen.2023.130507_bb0205 article-title: Spud DB: a resource for mining sequences, genotypes, and phenotypes to accelerate potato breeding, plant publication-title: Genome – volume: 18 start-page: 1 year: 2017 ident: 10.1016/j.bbagen.2023.130507_bb0340 article-title: Histone H3 lysine 36 methylation affects temperature-induced alternative splicing and flowering in plants publication-title: Genome Biol. doi: 10.1186/s13059-017-1235-x – volume: 182 start-page: 185 year: 2020 ident: 10.1016/j.bbagen.2023.130507_bb0345 article-title: PcG proteins MSI1 and BMI1 function upstream of miR156 to regulate aerial tuber formation in potato publication-title: Plant Physiol. doi: 10.1104/pp.19.00416 – volume: 16 start-page: 1950445 year: 2021 ident: 10.1016/j.bbagen.2023.130507_bb0355 article-title: Expression profiling of H3K27me3 demethylase genes during plant development and in response to environmental stress in Arabidopsis publication-title: Plant Signal. Behav. doi: 10.1080/15592324.2021.1950445 – volume: 9 start-page: 1617 year: 2020 ident: 10.1016/j.bbagen.2023.130507_bb0305 article-title: Characterization and stress response of the JmjC domain-containing histone demethylase gene family in the allotetraploid cotton species Gossypium hirsutum publication-title: Plants doi: 10.3390/plants9111617 – volume: 27 start-page: 95 year: 2019 ident: 10.1016/j.bbagen.2023.130507_bb0290 article-title: Characterization of cis-elements in hormonal stress-responsive genes in Oryza sativa, Asia Pac publication-title: J. Mol. Biol. Biotechnol. – volume: 6 start-page: 607 year: 2015 ident: 10.1016/j.bbagen.2023.130507_bb0130 article-title: Genome-wide identification of sweet orange (Citrus sinensis) histone modification gene families and their expression analysis during the fruit development and fruit-blue mold infection process publication-title: Front. Plant Sci. doi: 10.3389/fpls.2015.00607 – volume: 2 year: 2022 ident: 10.1016/j.bbagen.2023.130507_bb0245 article-title: ApE, a plasmid editor: a freely available DNA manipulation and visualization program publication-title: Front. Bioinform. doi: 10.3389/fbinf.2022.818619 – volume: 13 start-page: 627 year: 2003 ident: 10.1016/j.bbagen.2023.130507_bb0325 article-title: ATX-1, an Arabidopsis homolog of trithorax, activates flower homeotic genes publication-title: Curr. Biol. doi: 10.1016/S0960-9822(03)00243-4 – volume: 18 start-page: 263 year: 2005 ident: 10.1016/j.bbagen.2023.130507_bb0050 article-title: Arginine methylation: an emerging regulator of protein function publication-title: Mol. Cell doi: 10.1016/j.molcel.2005.04.003 – volume: 33 start-page: 1870 year: 2016 ident: 10.1016/j.bbagen.2023.130507_bb0230 article-title: MEGA7: molecular evolutionary genetics analysis version 7.0 for bigger datasets publication-title: Mol. Biol. Evol. doi: 10.1093/molbev/msw054 – volume: 439 start-page: 811 year: 2006 ident: 10.1016/j.bbagen.2023.130507_bb0035 article-title: Histone demethylation by a family of JmjC domain-containing proteins publication-title: Nature doi: 10.1038/nature04433 – volume: 46 start-page: 10669 year: 2018 ident: 10.1016/j.bbagen.2023.130507_bb0270 article-title: The Arabidopsis LDL1/2-HDA6 histone modification complex is functionally associated with CCA1/LHY in regulation of circadian clock genes publication-title: Nucleic Acids Res. – volume: 32 start-page: 558 year: 2014 ident: 10.1016/j.bbagen.2023.130507_bb0030 article-title: Histone lysine demethylases and their functions in plants, plant Mol. Biol publication-title: Report. – year: 2023 ident: 10.1016/j.bbagen.2023.130507_bb0315 – volume: 79 start-page: 163 year: 2012 ident: 10.1016/j.bbagen.2023.130507_bb0060 article-title: Arginine methylation of RNA-binding proteins regulates cell function and differentiation publication-title: Mol. Reprod. Dev. doi: 10.1002/mrd.22024 – start-page: 1 year: 2022 ident: 10.1016/j.bbagen.2023.130507_bb0150 article-title: Genome editing advancements in potato (Solanum tuberosum L.): operational challenges and solutions publication-title: J. Plant Biochem. Biotechnol. – volume: 6 year: 2011 ident: 10.1016/j.bbagen.2023.130507_bb0025 article-title: Characterization of the PRMT gene family in rice reveals conservation of arginine methylation publication-title: PLoS One doi: 10.1371/journal.pone.0022664 – volume: 20 start-page: 1 year: 2019 ident: 10.1016/j.bbagen.2023.130507_bb0190 article-title: Cold stress induces enhanced chromatin accessibility and bivalent histone modifications H3K4me3 and H3K27me3 of active genes in potato publication-title: Genome Biol. doi: 10.1186/s13059-019-1731-2 – start-page: 1 year: 2023 ident: 10.1016/j.bbagen.2023.130507_bb0185 article-title: High temperature triggers differential expression of JUMONJI C (JmjC) domain-containing histone demethylase genes in leaf and stolon tissues of potato (Solanum tuberosum L.) Genotypes publication-title: J. Plant Growth Regul. – volume: 63 start-page: 2755 year: 2006 ident: 10.1016/j.bbagen.2023.130507_bb0020 article-title: SET domain protein lysine methyltransferases: structure, specificity and catalysis publication-title: Cell. Mol. Life Sci. doi: 10.1007/s00018-006-6274-5 – volume: 37 start-page: 942 year: 2017 ident: 10.1016/j.bbagen.2023.130507_bb0155 article-title: Key players associated with tuberization in potato: potential candidates for genetic engineering publication-title: Crit. Rev. Biotechnol. doi: 10.1080/07388551.2016.1274876 – volume: 289660 year: 2018 ident: 10.1016/j.bbagen.2023.130507_bb0225 article-title: TBtools, a toolkit for biologists integrating various biological data handling tools with a user-friendly interface publication-title: BioRxiv – volume: 11 start-page: 322 year: 2022 ident: 10.1016/j.bbagen.2023.130507_bb0125 article-title: Genome-wide identification of histone modification gene families in the model legume Medicago truncatula and their expression analysis in nodules publication-title: Plants doi: 10.3390/plants11030322 – volume: 30 start-page: 325 year: 2002 ident: 10.1016/j.bbagen.2023.130507_bb0235 article-title: PlantCARE, a database of plant cis-acting regulatory elements and a portal to tools for in silico analysis of promoter sequences publication-title: Nucleic Acids Res. doi: 10.1093/nar/30.1.325 – volume: 61 start-page: 395 year: 2010 ident: 10.1016/j.bbagen.2023.130507_bb0015 article-title: Histone methylation in higher plants publication-title: Annu. Rev. Plant Biol. doi: 10.1146/annurev.arplant.043008.091939 – volume: 10 start-page: 800 year: 2019 ident: 10.1016/j.bbagen.2023.130507_bb0280 article-title: Mechanisms of ROS regulation of plant development and stress responses publication-title: Front. Plant Sci. doi: 10.3389/fpls.2019.00800 – volume: 128 start-page: 693 year: 2007 ident: 10.1016/j.bbagen.2023.130507_bb0005 article-title: Chromatin modifications and their function publication-title: Cell doi: 10.1016/j.cell.2007.02.005 – volume: 119 start-page: 941 year: 2004 ident: 10.1016/j.bbagen.2023.130507_bb0040 article-title: Histone demethylation mediated by the nuclear amine oxidase homolog LSD1 publication-title: Cell doi: 10.1016/j.cell.2004.12.012 – volume: 8 year: 2021 ident: 10.1016/j.bbagen.2023.130507_bb0175 article-title: DNA methylation affects photoperiodic tuberization in potato (Solanum tuberosum L.) by mediating the expression of genes related to the photoperiod and GA pathways publication-title: Hortic. Res. doi: 10.1038/s41438-021-00619-7 – volume: 9 year: 2014 ident: 10.1016/j.bbagen.2023.130507_bb0240 article-title: CELLO2GO: a web server for protein subCELlular LOcalization prediction with functional gene ontology annotation publication-title: PLoS One – volume: 1764 start-page: 1890 year: 2006 ident: 10.1016/j.bbagen.2023.130507_bb0055 article-title: Protein arginine methylation: cellular functions and methods of analysis publication-title: Biochim. Biophys. Acta, Proteins Proteomics doi: 10.1016/j.bbapap.2006.08.008 – volume: 72 start-page: 426 year: 2021 ident: 10.1016/j.bbagen.2023.130507_bb0180 article-title: The Polycomb group methyltransferase StE(z)2 and deposition of H3K27me3 and H3K4me3 regulate the expression of tuberization genes in potato publication-title: J. Exp. Bot. doi: 10.1093/jxb/eraa468 – volume: 2011 year: 2011 ident: 10.1016/j.bbagen.2023.130507_bb0065 article-title: The role of protein arginine methylation in mRNP dynamics publication-title: Mol. Biol. Int. doi: 10.4061/2011/163827 – volume: 148 start-page: 490 year: 2008 ident: 10.1016/j.bbagen.2023.130507_bb0100 article-title: Redundant requirement for a pair of PROTEIN ARGININE METHYLTRANSFERASE4 homologs for the proper regulation of Arabidopsis flowering time publication-title: Plant Physiol. doi: 10.1104/pp.108.124727 – volume: 181 start-page: 656 year: 2019 ident: 10.1016/j.bbagen.2023.130507_bb0330 article-title: The chromatin-remodeling factor PICKLE antagonizes polycomb repression of FT to promote flowering publication-title: Plant Physiol. doi: 10.1104/pp.19.00596 – volume: 9 start-page: 1228 year: 2018 ident: 10.1016/j.bbagen.2023.130507_bb0195 article-title: BABA-primed histone modifications in potato for intergenerational resistance to Phytophthora infestans publication-title: Front. Plant Sci. doi: 10.3389/fpls.2018.01228 – volume: 256 start-page: 1245 year: 2019 ident: 10.1016/j.bbagen.2023.130507_bb0320 article-title: Dynamic changes in histone modification are associated with upregulation of Hsf and rRNA genes during heat stress in maize seedlings publication-title: Protoplasma doi: 10.1007/s00709-019-01364-4 – volume: 31 start-page: 3784 year: 2003 ident: 10.1016/j.bbagen.2023.130507_bb0215 article-title: ExPASy: the proteomics server for in-depth protein knowledge and analysis publication-title: Nucleic Acids Res. doi: 10.1093/nar/gkg563 – volume: 43 year: 2020 ident: 10.1016/j.bbagen.2023.130507_bb0140 article-title: Identification of histone methylation modifiers and their expression patterns during somatic embryogenesis in Hevea brasiliensis publication-title: Genet. Mol. Biol. doi: 10.1590/1678-4685-gmb-2018-0141 – volume: 34 year: 2023 ident: 10.1016/j.bbagen.2023.130507_bb0275 article-title: Genome wide identification and expression profiling of early responsive to dehydration 6 (ERD6)-like gene family in chickpea (Cicer arietinum L.), plant publication-title: Gene – volume: 26 start-page: 147 year: 2005 ident: 10.1016/j.bbagen.2023.130507_bb0070 article-title: Role of protein methylation in regulation of transcription publication-title: Endocr. Rev. doi: 10.1210/er.2004-0008 – volume: 144 start-page: 1913 year: 2007 ident: 10.1016/j.bbagen.2023.130507_bb0075 article-title: Mutations in the type II protein arginine methyltransferase AtPRMT5 result in pleiotropic developmental defects in Arabidopsis publication-title: Plant Physiol. doi: 10.1104/pp.107.099531 – volume: 21 start-page: 1 year: 2021 ident: 10.1016/j.bbagen.2023.130507_bb0105 article-title: Genome-wide identification of Gramineae histone modification genes and their potential roles in regulating wheat and maize growth and stress responses publication-title: BMC Plant Biol. doi: 10.1186/s12870-021-03332-8 – volume: 20 start-page: 1 year: 2020 ident: 10.1016/j.bbagen.2023.130507_bb0295 article-title: Bioinformatics and expression analysis of histone modification genes in grapevine predict their involvement in seed development, powdery mildew resistance, and hormonal signaling publication-title: BMC Plant Biol. doi: 10.1186/s12870-020-02618-7 – volume: 23 start-page: 396 year: 2011 ident: 10.1016/j.bbagen.2023.130507_bb0085 article-title: Arabidopsis floral initiator SKB1 confers high salt tolerance by regulating transcription and pre-mRNA splicing through altering histone H4R3 and small nuclear ribonucleoprotein LSM4 methylation publication-title: Plant Cell doi: 10.1105/tpc.110.081356 |
| SSID | ssj0000595 |
| Score | 2.4484842 |
| Snippet | Potato (Solanum tuberosum L.), the third most important non-cereal crop, is sensitive to high temperature. Histone modifications have been known to regulate... |
| SourceID | proquest pubmed crossref |
| SourceType | Aggregation Database Index Database Enrichment Source |
| StartPage | 130507 |
| SubjectTerms | class cultivars cytoplasm domain epigenetics exons family genome-wide association study heat heat shock response heat stress heat tolerance histones introns leaves methyltransferases phylogeny potatoes prediction promoter regions Solanum tuberosum temperature |
| Title | Genome-wide identification and expression analysis reveal the role of histone methyltransferase and demethylase genes in heat stress response in potato (Solanum tuberosum L.) |
| URI | https://www.ncbi.nlm.nih.gov/pubmed/37925032 https://www.proquest.com/docview/2886329744 https://www.proquest.com/docview/3154186919 |
| Volume | 1868 |
| hasFullText | 1 |
| inHoldings | 1 |
| isFullTextHit | |
| isPrint | |
| link | http://utb.summon.serialssolutions.com/2.0.0/link/0/eLvHCXMwnV1bb9MwFLbKEIIXBONWbjISD6AoUeNcmjyiaRehbjyslfoW2YnNMo2kyhJgPPDC_-E3ck4cp6m2icFL1Li2E_X7ap9zfC6EvA2UxMMwZnu-imxfxrAOShHbnLNpm_FKBhjvfHgUHiz8j8tgORr9GngtNbVw0h9XxpX8D6rQBrhilOw_INtPCg3wGfCFKyAM1xthvC-L8ou0v-WZtPKs8_vRiKI9XH7vvFzxtss9ghmb0L984FjYphwGWROLSV-c1a0kKyvY3dpJMqnb8f4zLoxoIcEV3ISZVNrLtk0-siprrCUDUusxqMzoZF836JECP4o1c4zVwZwh52V6kmO6AkvWlshLbWXhmN-DOyYhtnXeCLQV9bL_IdcR3cdNJU7y3vCdF1oO3udNxb8OjRnMHxgzuiCuiW-DjBhsLtBhNKSitcIa1iDI2lfuAdocceoIASsyprhlXtd_veeZc_6jT8neYjZL5rvL-S1ym4GugWUwnJ9rPyGQPwN9FKXfzMRftk6Cl5-xKd9co7S0wsv8AbnfaR30g6bQQzKSxTa5o-uQXmyTuzum7N8j8ntAKrpJKgp8oGtSUUMqqklFgVQUSUVLRTtS0UukaicZkIq2pKJ5QZFUVJOKGlJhuyYVfddRivaUojPn_WOy2Nud7xzYXVEPO_X8SW2nGcisfhgoJiMhhIpjIachz9JARplEbduNheIKemcqS1XM1YTBoCyS3MUKo0_IVgHv_4xQV8HXXuxyP5j4qWRRkHp4qp4FSoUqSsfEM1AkaZfxHguvnCXGtfE00QAmCGCiARwTux-10hlf_tL_jUE5AajwvI0XsmzOExZFocdAYfev7-OBCoNV4dx4TJ5qivRP9aYxKCgee36D0S_IvfX_6SXZqqtGvgJxuRavWzr_ATzmytk |
| linkProvider | Elsevier |
| openUrl | ctx_ver=Z39.88-2004&ctx_enc=info%3Aofi%2Fenc%3AUTF-8&rfr_id=info%3Asid%2Fsummon.serialssolutions.com&rft_val_fmt=info%3Aofi%2Ffmt%3Akev%3Amtx%3Ajournal&rft.genre=article&rft.atitle=Genome-wide+identification+and+expression+analysis+reveal+the+role+of+histone+methyltransferase+and+demethylase+genes+in+heat+stress+response+in+potato+%28Solanum+tuberosum+L.%29&rft.jtitle=Biochimica+et+biophysica+acta.+General+subjects&rft.au=Mali%2C+Surbhi&rft.au=Zinta%2C+Gaurav&rft.date=2024-01-01&rft.issn=0304-4165&rft.volume=1868&rft.issue=1+p.130507-&rft_id=info:doi/10.1016%2Fj.bbagen.2023.130507&rft.externalDBID=NO_FULL_TEXT |
| thumbnail_l | http://covers-cdn.summon.serialssolutions.com/index.aspx?isbn=/lc.gif&issn=0304-4165&client=summon |
| thumbnail_m | http://covers-cdn.summon.serialssolutions.com/index.aspx?isbn=/mc.gif&issn=0304-4165&client=summon |
| thumbnail_s | http://covers-cdn.summon.serialssolutions.com/index.aspx?isbn=/sc.gif&issn=0304-4165&client=summon |