c-JUN: a chromatin repressor that limits mesoderm differentiation in human pluripotent stem cells
Cell fate determination at the chromatin level is not fully comprehended. Here, we report that c-JUN acts on chromatin loci to limit mesoderm cell fate specification as cells exit pluripotency. Although c-JUN is widely expressed across various cell types in early embryogenesis, it is not essential f...
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Published in | Nucleic acids research Vol. 53; no. 3 |
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Main Authors | , , , , , , , , , , , |
Format | Journal Article |
Language | English |
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England
Oxford University Press
24.01.2025
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ISSN | 0305-1048 1362-4962 1362-4962 |
DOI | 10.1093/nar/gkaf001 |
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Abstract | Cell fate determination at the chromatin level is not fully comprehended. Here, we report that c-JUN acts on chromatin loci to limit mesoderm cell fate specification as cells exit pluripotency. Although c-JUN is widely expressed across various cell types in early embryogenesis, it is not essential for maintaining pluripotency. Instead, it functions as a repressor to constrain mesoderm development while having a negligible impact on ectoderm differentiation. c-JUN interacts with MBD3–NuRD complex, which helps maintain chromatin in a low accessibility state at mesoderm-related genes during the differentiation of human pluripotent stem cells into mesoderm. Furthermore, c-JUN specifically inhibits the activation of key mesoderm factors, such as EOMES and GATA4. Knocking out c-JUN or inhibiting it with a JNK inhibitor can alleviate this suppression, promoting mesoderm cell differentiation. Consistently, knockdown of MBD3 enhances mesoderm generation, whereas MBD3 overexpression impedes it. Overexpressing c-JUN redirects differentiation toward a fibroblast-like lineage. Collectively, our findings suggest that c-JUN acts as a chromatin regulator to restrict the mesoderm cell fate. |
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AbstractList | Cell fate determination at the chromatin level is not fully comprehended. Here, we report that c-JUN acts on chromatin loci to limit mesoderm cell fate specification as cells exit pluripotency. Although c-JUN is widely expressed across various cell types in early embryogenesis, it is not essential for maintaining pluripotency. Instead, it functions as a repressor to constrain mesoderm development while having a negligible impact on ectoderm differentiation. c-JUN interacts with MBD3-NuRD complex, which helps maintain chromatin in a low accessibility state at mesoderm-related genes during the differentiation of human pluripotent stem cells into mesoderm. Furthermore, c-JUN specifically inhibits the activation of key mesoderm factors, such as EOMES and GATA4. Knocking out c-JUN or inhibiting it with a JNK inhibitor can alleviate this suppression, promoting mesoderm cell differentiation. Consistently, knockdown of MBD3 enhances mesoderm generation, whereas MBD3 overexpression impedes it. Overexpressing c-JUN redirects differentiation toward a fibroblast-like lineage. Collectively, our findings suggest that c-JUN acts as a chromatin regulator to restrict the mesoderm cell fate. Cell fate determination at the chromatin level is not fully comprehended. Here, we report that c-JUN acts on chromatin loci to limit mesoderm cell fate specification as cells exit pluripotency. Although c-JUN is widely expressed across various cell types in early embryogenesis, it is not essential for maintaining pluripotency. Instead, it functions as a repressor to constrain mesoderm development while having a negligible impact on ectoderm differentiation. c-JUN interacts with MBD3– NuRD complex, which helps maintain chromatin in a low accessibility state at mesoderm-related genes during the differentiation of human pluripotent stem cells into mesoderm. Furthermore, c-JUN specifically inhibits the activation of key mesoderm factors, such as EOMES and GATA4 . Knocking out c-JUN or inhibiting it with a JNK inhibitor can alleviate this suppression, promoting mesoderm cell differentiation. Consistently, knockdown of MBD3 enhances mesoderm generation, whereas MBD3 overexpression impedes it. Overexpressing c-JUN redirects differentiation toward a fibroblast-like lineage. Collectively, our findings suggest that c-JUN acts as a chromatin regulator to restrict the mesoderm cell fate. Graphical Abstract Cell fate determination at the chromatin level is not fully comprehended. Here, we report that c-JUN acts on chromatin loci to limit mesoderm cell fate specification as cells exit pluripotency. Although c-JUN is widely expressed across various cell types in early embryogenesis, it is not essential for maintaining pluripotency. Instead, it functions as a repressor to constrain mesoderm development while having a negligible impact on ectoderm differentiation. c-JUN interacts with MBD3-NuRD complex, which helps maintain chromatin in a low accessibility state at mesoderm-related genes during the differentiation of human pluripotent stem cells into mesoderm. Furthermore, c-JUN specifically inhibits the activation of key mesoderm factors, such as EOMES and GATA4. Knocking out c-JUN or inhibiting it with a JNK inhibitor can alleviate this suppression, promoting mesoderm cell differentiation. Consistently, knockdown of MBD3 enhances mesoderm generation, whereas MBD3 overexpression impedes it. Overexpressing c-JUN redirects differentiation toward a fibroblast-like lineage. Collectively, our findings suggest that c-JUN acts as a chromatin regulator to restrict the mesoderm cell fate.Cell fate determination at the chromatin level is not fully comprehended. Here, we report that c-JUN acts on chromatin loci to limit mesoderm cell fate specification as cells exit pluripotency. Although c-JUN is widely expressed across various cell types in early embryogenesis, it is not essential for maintaining pluripotency. Instead, it functions as a repressor to constrain mesoderm development while having a negligible impact on ectoderm differentiation. c-JUN interacts with MBD3-NuRD complex, which helps maintain chromatin in a low accessibility state at mesoderm-related genes during the differentiation of human pluripotent stem cells into mesoderm. Furthermore, c-JUN specifically inhibits the activation of key mesoderm factors, such as EOMES and GATA4. Knocking out c-JUN or inhibiting it with a JNK inhibitor can alleviate this suppression, promoting mesoderm cell differentiation. Consistently, knockdown of MBD3 enhances mesoderm generation, whereas MBD3 overexpression impedes it. Overexpressing c-JUN redirects differentiation toward a fibroblast-like lineage. Collectively, our findings suggest that c-JUN acts as a chromatin regulator to restrict the mesoderm cell fate. |
Author | Zhang, Ran Zhang, Qi Zhang, Xiaofei Pei, Duanqing Li, Guihuan Hutchins, Andrew P Wang, Zhenhua Xiang, Dan Qin, Dajiang Li, Dongwei Chen, Jiekai Su, Huanxing |
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Cites_doi | 10.1038/ncb2304 10.1128/MCB.00467-08 10.1093/bioinformatics/bts635 10.1038/nprot.2017.147 10.1242/dev.175059 10.1242/dev.02152 10.1016/j.tcb.2021.07.008 10.1038/nbt.2859 10.1016/j.molcel.2010.05.004 10.1073/pnas.2104841118 10.1038/s41587-020-0591-3 10.1038/s41586-021-04158-y 10.1186/1471-2105-12-323 10.1371/journal.pcbi.1010378 10.1186/s13059-014-0550-8 10.1093/nar/gkx054 10.1038/s41586-018-0414-6 10.1016/j.celrep.2017.06.011 10.1038/s41588-019-0408-9 10.1016/j.molcel.2017.11.026 10.1242/dev.02802 10.1038/s41467-021-21246-9 10.1038/nature14233 10.1242/dev.193789 10.1186/gb-2010-11-2-r14 10.1101/gad.7.7b.1309 10.26508/lsa.202302121 10.1038/nmeth.2999 10.1126/science.aax0249 10.1016/j.trsl.2014.05.003 10.1093/emboj/cdg328 10.1016/j.stem.2014.04.019 10.1016/j.devcel.2020.10.015 10.1016/j.stem.2024.07.006 10.1242/dev.02519 10.1038/ncb3193 10.1016/j.ceb.2019.07.012 10.1073/pnas.1222878110 10.1038/nmeth.4150 10.1038/nbt.2596 10.3390/ijms23095255 10.1038/365179a0 10.1186/1471-2105-12-480 10.1126/science.aas9302 10.1016/j.devcel.2022.11.008 10.3390/cancers10040093 10.1242/dev.01171 10.1016/j.devcel.2007.06.006 10.1186/2045-9769-3-1 10.1016/j.cell.2006.10.018 10.1038/s41467-019-11561-7 10.15252/embr.202051644 10.1371/journal.pone.0028394 10.1038/nmeth.1923 10.1038/ncb1098 10.1186/s13578-023-01141-0 10.1016/0092-8674(87)90611-8 10.1101/2021.05.05.442755 10.1242/dev.201450 10.15252/embr.202050944 10.1038/s41598-019-55620-x 10.1038/nature09607 10.1038/s41467-023-38543-0 10.1038/s41586-020-2383-9 10.1002/0471142727.mb2129s109 10.7554/eLife.71361 10.1002/wsbm.1471 10.1002/stem.2111 10.1101/gad.13.5.607 10.1016/j.stem.2017.10.012 10.1186/gb-2008-9-9-r137 10.1016/j.devcel.2023.07.023 10.1074/jbc.RA119.007840 |
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References | Rivera-Feliciano (2025020510082552200_B60) 2006; 133 Zhang (2025020510082552200_B51) 2024; 31 Muncie (2025020510082552200_B7) 2020; 55 Hutchins (2025020510082552200_B31) 2017; 45 Trapnell (2025020510082552200_B17) 2014; 32 Hilberg (2025020510082552200_B21) 1993; 365 Pereira (2025020510082552200_B13) 2011; 6 Langmead (2025020510082552200_B32) 2012; 9 Zhang (2025020510082552200_B45) 2008; 9 Angel (2025020510082552200_B18) 1987; 49 Schule (2025020510082552200_B59) 2023; 58 Economou (2025020510082552200_B9) 2022; 57 Vierbuchen (2025020510082552200_B52) 2017; 68 Burridge (2025020510082552200_B50) 2014; 11 Tanigawa (2025020510082552200_B56) 2022; 18 Costello (2025020510082552200_B58) 2011; 13 Dobin (2025020510082552200_B37) 2013; 29 Li (2025020510082552200_B47) 2023; 13 Heinz (2025020510082552200_B57) 2010; 38 Aguilera (2025020510082552200_B20) 2011; 469 Wada (2025020510082552200_B24) 2004; 6 Tsankov (2025020510082552200_B3) 2015; 518 Seok (2025020510082552200_B65) 2013; 110 Morey (2025020510082552200_B67) 2008; 28 Moris (2025020510082552200_B6) 2020; 582 Bergen (2025020510082552200_B41) 2020; 38 Young (2025020510082552200_B44) 2010; 11 Nelson (2025020510082552200_B10) 2017; 19 Schreiber (2025020510082552200_B25) 1999; 13 Zhai (2025020510082552200_B1) 2022; 32 Casey (2025020510082552200_B16) 2020; 12 Risso (2025020510082552200_B34) 2011; 12 Tyser (2025020510082552200_B48) 2021; 600 Perlman (2025020510082552200_B64) 2016; 2016 Johnson (2025020510082552200_B22) 1993; 7 Wang (2025020510082552200_B53) 2023; 14 Markov (2025020510082552200_B69) 2021; 118 Liu (2025020510082552200_B72) 2005; 132 Prummel (2025020510082552200_B11) 2019; 10 Jin (2025020510082552200_B55) 2021; 12 Qiu (2025020510082552200_B42) 2017; 14 Ferretti (2025020510082552200_B14) 2019; 61 Kaji (2025020510082552200_B68) 2007; 134 Rossant (2025020510082552200_B2) 2018; 360 Prummel (2025020510082552200_B15) 2020; 147 Hutchins (2025020510082552200_B30) 2014; 3 Love (2025020510082552200_B35) 2014; 15 Tzahor (2025020510082552200_B62) 2007; 13 dos Santos (2025020510082552200_B70) 2014; 15 La Manno (2025020510082552200_B40) 2018; 560 Hu (2025020510082552200_B29) 2019; 294 Garces de Los Fayos Alonso (2025020510082552200_B19) 2018; 10 Rhodes (2025020510082552200_B49) 2022; 11 Clevers (2025020510082552200_B71) 2006; 127 Zhang (2025020510082552200_B46) 2018; 13 Thorpe (2025020510082552200_B73) 2004; 131 Li (2025020510082552200_B26) 2017; 21 Gulati (2025020510082552200_B39) 2020; 367 Liu (2025020510082552200_B23) 2015; 17 Li (2025020510082552200_B66) 2021; 22 Mathiah (2025020510082552200_B5) 2020; 21 Buenrostro (2025020510082552200_B36) 2015; 109 Zhao (2025020510082552200_B74) 2019; 9 Schohl (2025020510082552200_B63) 2003; 22 Kaminow (2025020510082552200_B38) 2021 Afouda (2025020510082552200_B61) 2022; 23 Probst (2025020510082552200_B4) 2021; 148 Tsaytler (2025020510082552200_B8) 2023; 150 Kumar (2025020510082552200_B43) 2013; 31 Basta (2025020510082552200_B54) 2015; 165 Soibam (2025020510082552200_B12) 2015; 33 Li (2025020510082552200_B33) 2011; 12 Li (2025020510082552200_B27) 2019; 51 Zhong (2025020510082552200_B28) 2023; 6 |
References_xml | – volume: 13 start-page: 1084 year: 2011 ident: 2025020510082552200_B58 article-title: The T-box transcription factor eomesodermin acts upstream of Mesp1 to specify cardiac mesoderm during mouse gastrulation publication-title: Nat. Cell Biol. doi: 10.1038/ncb2304 – volume: 28 start-page: 5912 year: 2008 ident: 2025020510082552200_B67 article-title: MBD3, a component of the NuRD complex, facilitates chromatin alteration and deposition of epigenetic marks publication-title: Mol. Cell. Biol. doi: 10.1128/MCB.00467-08 – volume: 29 start-page: 15 year: 2013 ident: 2025020510082552200_B37 article-title: STAR: ultrafast universal RNA-seq aligner publication-title: Bioinformatics doi: 10.1093/bioinformatics/bts635 – volume: 13 start-page: 530 year: 2018 ident: 2025020510082552200_B46 article-title: Proteome-wide identification of ubiquitin interactions using UbIA-MS publication-title: Nat. Protoc. doi: 10.1038/nprot.2017.147 – volume: 147 start-page: dev175059 year: 2020 ident: 2025020510082552200_B15 article-title: The lateral plate mesoderm publication-title: Development doi: 10.1242/dev.175059 – volume: 132 start-page: 5375 year: 2005 ident: 2025020510082552200_B72 article-title: Distinct roles for Xenopus Tcf/Lef genes in mediating specific responses to Wnt/beta-catenin signalling in mesoderm development publication-title: Development doi: 10.1242/dev.02152 – volume: 32 start-page: 18 year: 2022 ident: 2025020510082552200_B1 article-title: Human embryonic development: from peri-implantation to gastrulation publication-title: Trends Cell Biol. doi: 10.1016/j.tcb.2021.07.008 – volume: 32 start-page: 381 year: 2014 ident: 2025020510082552200_B17 article-title: The dynamics and regulators of cell fate decisions are revealed by pseudotemporal ordering of single cells publication-title: Nat. Biotechnol. doi: 10.1038/nbt.2859 – volume: 38 start-page: 576 year: 2010 ident: 2025020510082552200_B57 article-title: Simple combinations of lineage-determining transcription factors prime cis-regulatory elements required for macrophage and B cell identities publication-title: Mol. Cell doi: 10.1016/j.molcel.2010.05.004 – volume: 118 start-page: e2104841118 year: 2021 ident: 2025020510082552200_B69 article-title: AP-1 is a temporally regulated dual gatekeeper of reprogramming to pluripotency publication-title: Proc. Natl Acad. Sci. U.S.A. doi: 10.1073/pnas.2104841118 – volume: 38 start-page: 1408 year: 2020 ident: 2025020510082552200_B41 article-title: Generalizing RNA velocity to transient cell states through dynamical modeling publication-title: Nat. Biotechnol. doi: 10.1038/s41587-020-0591-3 – volume: 600 start-page: 285 year: 2021 ident: 2025020510082552200_B48 article-title: Single-cell transcriptomic characterization of a gastrulating human embryo publication-title: Nature doi: 10.1038/s41586-021-04158-y – volume: 12 start-page: 323 year: 2011 ident: 2025020510082552200_B33 article-title: RSEM: accurate transcript quantification from RNA-seq data with or without a reference genome publication-title: BMC Bioinformatics doi: 10.1186/1471-2105-12-323 – volume: 18 start-page: e1010378 year: 2022 ident: 2025020510082552200_B56 article-title: WhichTF is functionally important in your open chromatin data? publication-title: PLoS Comput. Biol. doi: 10.1371/journal.pcbi.1010378 – volume: 15 start-page: 550 year: 2014 ident: 2025020510082552200_B35 article-title: Moderated estimation of fold change and dispersion for RNA-seq data with DESeq2 publication-title: Genome Biol. doi: 10.1186/s13059-014-0550-8 – volume: 45 start-page: 2354 year: 2017 ident: 2025020510082552200_B31 article-title: Models of global gene expression define major domains of cell type and tissue identity publication-title: Nucleic Acids Res. doi: 10.1093/nar/gkx054 – volume: 560 start-page: 494 year: 2018 ident: 2025020510082552200_B40 article-title: RNA velocity of single cells publication-title: Nature doi: 10.1038/s41586-018-0414-6 – volume: 19 start-page: 2782 year: 2017 ident: 2025020510082552200_B10 article-title: In vivo regulation of the zebrafish endoderm progenitor niche by T-box transcription factors publication-title: Cell Rep. doi: 10.1016/j.celrep.2017.06.011 – volume: 51 start-page: 999 year: 2019 ident: 2025020510082552200_B27 article-title: Genome-scale screens identify JNK-JUN signaling as a barrier for pluripotency exit and endoderm differentiation publication-title: Nat. Genet. doi: 10.1038/s41588-019-0408-9 – volume: 68 start-page: 1067 year: 2017 ident: 2025020510082552200_B52 article-title: AP-1 transcription factors and the BAF complex mediate signal-dependent enhancer selection publication-title: Mol. Cell doi: 10.1016/j.molcel.2017.11.026 – volume: 134 start-page: 1123 year: 2007 ident: 2025020510082552200_B68 article-title: Mbd3, a component of the NuRD co-repressor complex, is required for development of pluripotent cells publication-title: Development doi: 10.1242/dev.02802 – volume: 12 start-page: 1088 year: 2021 ident: 2025020510082552200_B55 article-title: Inference and analysis of cell-cell communication using CellChat publication-title: Nat. Commun. doi: 10.1038/s41467-021-21246-9 – volume: 518 start-page: 344 year: 2015 ident: 2025020510082552200_B3 article-title: Transcription factor binding dynamics during human ES cell differentiation publication-title: Nature doi: 10.1038/nature14233 – volume: 148 start-page: dev193789 year: 2021 ident: 2025020510082552200_B4 article-title: Spatiotemporal sequence of mesoderm and endoderm lineage segregation during mouse gastrulation publication-title: Development doi: 10.1242/dev.193789 – volume: 11 start-page: R14 year: 2010 ident: 2025020510082552200_B44 article-title: Gene ontology analysis for RNA-seq: accounting for selection bias publication-title: Genome Biol. doi: 10.1186/gb-2010-11-2-r14 – volume: 7 start-page: 1309 year: 1993 ident: 2025020510082552200_B22 article-title: A null mutation at the c-jun locus causes embryonic lethality and retarded cell growth in culture publication-title: Genes Dev. doi: 10.1101/gad.7.7b.1309 – volume: 6 start-page: e202302121 year: 2023 ident: 2025020510082552200_B28 article-title: c-JUN is a barrier in hESC to cardiomyocyte transition publication-title: Life Sci. Alliance doi: 10.26508/lsa.202302121 – volume: 11 start-page: 855 year: 2014 ident: 2025020510082552200_B50 article-title: Chemically defined generation of human cardiomyocytes publication-title: Nat. Methods doi: 10.1038/nmeth.2999 – volume: 367 start-page: 405 year: 2020 ident: 2025020510082552200_B39 article-title: Single-cell transcriptional diversity is a hallmark of developmental potential publication-title: Science doi: 10.1126/science.aax0249 – volume: 165 start-page: 36 year: 2015 ident: 2025020510082552200_B54 article-title: The nucleosome remodeling and deacetylase complex in development and disease publication-title: Transl. Res. doi: 10.1016/j.trsl.2014.05.003 – volume: 22 start-page: 3303 year: 2003 ident: 2025020510082552200_B63 article-title: A role for maternal beta-catenin in early mesoderm induction in Xenopus publication-title: EMBO J. doi: 10.1093/emboj/cdg328 – volume: 15 start-page: 102 year: 2014 ident: 2025020510082552200_B70 article-title: MBD3/NuRD facilitates induction of pluripotency in a context-dependent manner publication-title: Cell Stem Cell doi: 10.1016/j.stem.2014.04.019 – volume: 55 start-page: 679 year: 2020 ident: 2025020510082552200_B7 article-title: Mechanical tension promotes formation of gastrulation-like nodes and patterns mesoderm specification in human embryonic stem cells publication-title: Dev. Cell doi: 10.1016/j.devcel.2020.10.015 – volume: 31 start-page: 1298 year: 2024 ident: 2025020510082552200_B51 article-title: A primate-specific endogenous retroviral envelope protein sequesters SFRP2 to regulate human cardiomyocyte development publication-title: Cell Stem Cell doi: 10.1016/j.stem.2024.07.006 – volume: 133 start-page: 3607 year: 2006 ident: 2025020510082552200_B60 article-title: Development of heart valves requires Gata4 expression in endothelial-derived cells publication-title: Development doi: 10.1242/dev.02519 – volume: 17 start-page: 856 year: 2015 ident: 2025020510082552200_B23 article-title: The oncogene c-Jun impedes somatic cell reprogramming publication-title: Nat. Cell Biol. doi: 10.1038/ncb3193 – volume: 61 start-page: 110 year: 2019 ident: 2025020510082552200_B14 article-title: Mesoderm specification and diversification: from single cells to emergent tissues publication-title: Curr. Opin. Cell Biol. doi: 10.1016/j.ceb.2019.07.012 – volume: 110 start-page: 3507 year: 2013 ident: 2025020510082552200_B65 article-title: Genomic responses in mouse models poorly mimic human inflammatory diseases publication-title: Proc. Natl Acad. Sci. U.S.A. doi: 10.1073/pnas.1222878110 – volume: 14 start-page: 309 year: 2017 ident: 2025020510082552200_B42 article-title: Single-cell mRNA quantification and differential analysis with Census publication-title: Nat. Methods doi: 10.1038/nmeth.4150 – volume: 31 start-page: 615 year: 2013 ident: 2025020510082552200_B43 article-title: Uniform, optimal signal processing of mapped deep-sequencing data publication-title: Nat. Biotechnol. doi: 10.1038/nbt.2596 – volume: 23 start-page: 5255 year: 2022 ident: 2025020510082552200_B61 article-title: Towards understanding the gene-specific roles of GATA factors in heart development: does GATA4 lead the way? publication-title: Int. J. Mol. Sci. doi: 10.3390/ijms23095255 – volume: 365 start-page: 179 year: 1993 ident: 2025020510082552200_B21 article-title: c-Jun is essential for normal mouse development and hepatogenesis publication-title: Nature doi: 10.1038/365179a0 – volume: 12 start-page: 480 year: 2011 ident: 2025020510082552200_B34 article-title: GC-content normalization for RNA-seq data publication-title: BMC Bioinformatics doi: 10.1186/1471-2105-12-480 – volume: 360 start-page: 1075 year: 2018 ident: 2025020510082552200_B2 article-title: Exploring early human embryo development publication-title: Science doi: 10.1126/science.aas9302 – volume: 57 start-page: 2604 year: 2022 ident: 2025020510082552200_B9 article-title: Nodal signaling establishes a competency window for stochastic cell fate switching publication-title: Dev. Cell doi: 10.1016/j.devcel.2022.11.008 – volume: 10 start-page: 93 year: 2018 ident: 2025020510082552200_B19 article-title: The role of activator protein-1 (AP-1) family members in CD30-positive lymphomas publication-title: Cancers (Basel) doi: 10.3390/cancers10040093 – volume: 131 start-page: 2899 year: 2004 ident: 2025020510082552200_B73 article-title: nemo-like kinase is an essential co-activator of Wnt signaling during early zebrafish development publication-title: Development doi: 10.1242/dev.01171 – volume: 13 start-page: 10 year: 2007 ident: 2025020510082552200_B62 article-title: Wnt/beta-catenin signaling and cardiogenesis: timing does matter publication-title: Dev. Cell doi: 10.1016/j.devcel.2007.06.006 – volume: 3 start-page: 1 year: 2014 ident: 2025020510082552200_B30 article-title: glbase: a framework for combining, analyzing and displaying heterogeneous genomic and high-throughput sequencing data publication-title: Cell Regen doi: 10.1186/2045-9769-3-1 – volume: 127 start-page: 469 year: 2006 ident: 2025020510082552200_B71 article-title: Wnt/beta-catenin signaling in development and disease publication-title: Cell doi: 10.1016/j.cell.2006.10.018 – volume: 10 start-page: 3857 year: 2019 ident: 2025020510082552200_B11 article-title: A conserved regulatory program initiates lateral plate mesoderm emergence across chordates publication-title: Nat. Commun. doi: 10.1038/s41467-019-11561-7 – volume: 22 start-page: e51644 year: 2021 ident: 2025020510082552200_B66 article-title: Chromatin accessibility dynamics during cell fate reprogramming publication-title: EMBO Rep. doi: 10.15252/embr.202051644 – volume: 6 start-page: e28394 year: 2011 ident: 2025020510082552200_B13 article-title: Brachyury and related Tbx proteins interact with the Mixl1 homeodomain protein and negatively regulate Mixl1 transcriptional activity publication-title: PLoS One doi: 10.1371/journal.pone.0028394 – volume: 9 start-page: 357 year: 2012 ident: 2025020510082552200_B32 article-title: Fast gapped-read alignment with Bowtie 2 publication-title: Nat. Methods doi: 10.1038/nmeth.1923 – volume: 2016 start-page: 170 year: 2016 ident: 2025020510082552200_B64 article-title: Mouse models of human disease: an evolutionary perspective publication-title: Evol. Med. Public Health – volume: 6 start-page: 215 year: 2004 ident: 2025020510082552200_B24 article-title: MKK7 couples stress signalling to G2/M cell-cycle progression and cellular senescence publication-title: Nat. Cell Biol. doi: 10.1038/ncb1098 – volume: 13 start-page: 191 year: 2023 ident: 2025020510082552200_B47 article-title: c-Jun as a one-way valve at the naive to primed interface publication-title: Cell Biosci. doi: 10.1186/s13578-023-01141-0 – volume: 49 start-page: 729 year: 1987 ident: 2025020510082552200_B18 article-title: Phorbol ester-inducible genes contain a common cis element recognized by a TPA-modulated trans-acting factor publication-title: Cell doi: 10.1016/0092-8674(87)90611-8 – year: 2021 ident: 2025020510082552200_B38 article-title: STARsolo: accurate, fast and versatile mapping/quantification of single-cell and single-nucleus RNA-seq data doi: 10.1101/2021.05.05.442755 – volume: 150 start-page: dev201450 year: 2023 ident: 2025020510082552200_B8 article-title: BMP4 triggers regulatory circuits specifying the cardiac mesoderm lineage publication-title: Development doi: 10.1242/dev.201450 – volume: 21 start-page: e50944 year: 2020 ident: 2025020510082552200_B5 article-title: Asymmetry in the frequency and position of mitosis in the mouse embryo epiblast at gastrulation publication-title: EMBO Rep. doi: 10.15252/embr.202050944 – volume: 9 start-page: 19389 year: 2019 ident: 2025020510082552200_B74 article-title: Deciphering role of Wnt signalling in cardiac mesoderm and cardiomyocyte differentiation from human iPSCs: four-dimensional control of Wnt pathway for hiPSC-CMs differentiation publication-title: Sci. Rep. doi: 10.1038/s41598-019-55620-x – volume: 469 start-page: 231 year: 2011 ident: 2025020510082552200_B20 article-title: c-Jun N-terminal phosphorylation antagonises recruitment of the Mbd3/NuRD repressor complex publication-title: Nature doi: 10.1038/nature09607 – volume: 14 start-page: 2846 year: 2023 ident: 2025020510082552200_B53 article-title: The NuRD complex cooperates with SALL4 to orchestrate reprogramming publication-title: Nat. Commun. doi: 10.1038/s41467-023-38543-0 – volume: 582 start-page: 410 year: 2020 ident: 2025020510082552200_B6 article-title: An in vitro model of early anteroposterior organization during human development publication-title: Nature doi: 10.1038/s41586-020-2383-9 – volume: 109 start-page: 21.29.1 year: 2015 ident: 2025020510082552200_B36 article-title: ATAC-seq: a method for assaying chromatin accessibility genome-wide publication-title: Curr. Protoc. Mol. Biol. doi: 10.1002/0471142727.mb2129s109 – volume: 11 start-page: e71361 year: 2022 ident: 2025020510082552200_B49 article-title: Human embryoid bodies as a novel system for genomic studies of functionally diverse cell types publication-title: eLife doi: 10.7554/eLife.71361 – volume: 12 start-page: e1471 year: 2020 ident: 2025020510082552200_B16 article-title: Theory of cell fate publication-title: Wiley Interdiscip. Rev. Syst. Biol. Med. doi: 10.1002/wsbm.1471 – volume: 33 start-page: 3254 year: 2015 ident: 2025020510082552200_B12 article-title: Genome-wide identification of MESP1 targets demonstrates primary regulation over mesendoderm gene activity publication-title: Stem Cells doi: 10.1002/stem.2111 – volume: 13 start-page: 607 year: 1999 ident: 2025020510082552200_B25 article-title: Control of cell cycle progression by c-Jun is p53 dependent publication-title: Genes Dev. doi: 10.1101/gad.13.5.607 – volume: 21 start-page: 819 year: 2017 ident: 2025020510082552200_B26 article-title: Chromatin accessibility dynamics during iPSC reprogramming publication-title: Cell Stem Cell doi: 10.1016/j.stem.2017.10.012 – volume: 9 start-page: R137 year: 2008 ident: 2025020510082552200_B45 article-title: Model-based analysis of ChIP-Seq (MACS) publication-title: Genome Biol. doi: 10.1186/gb-2008-9-9-r137 – volume: 58 start-page: 1627 year: 2023 ident: 2025020510082552200_B59 article-title: Eomes restricts brachyury functions at the onset of mouse gastrulation publication-title: Dev. Cell doi: 10.1016/j.devcel.2023.07.023 – volume: 294 start-page: 9959 year: 2019 ident: 2025020510082552200_B29 article-title: Stk40 deletion elevates c-JUN protein level and impairs mesoderm differentiation publication-title: J. Biol. Chem. doi: 10.1074/jbc.RA119.007840 |
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Snippet | Cell fate determination at the chromatin level is not fully comprehended. Here, we report that c-JUN acts on chromatin loci to limit mesoderm cell fate... Cell fate determination at the chromatin level is not fully comprehended. Here, we report that c-JUN acts on chromatin loci to limit mesoderm cell fate... |
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SubjectTerms | Cell Differentiation - genetics Chromatin - genetics Chromatin - metabolism DNA-Binding Proteins - genetics DNA-Binding Proteins - metabolism Gene Expression Regulation, Developmental Gene regulation, Chromatin and Epigenetics Humans Mesoderm - cytology Mesoderm - metabolism Mi-2 Nucleosome Remodeling and Deacetylase Complex - genetics Mi-2 Nucleosome Remodeling and Deacetylase Complex - metabolism Pluripotent Stem Cells - cytology Pluripotent Stem Cells - metabolism Proto-Oncogene Proteins c-jun - genetics Proto-Oncogene Proteins c-jun - metabolism Transcription Factors - genetics Transcription Factors - metabolism |
Title | c-JUN: a chromatin repressor that limits mesoderm differentiation in human pluripotent stem cells |
URI | https://www.ncbi.nlm.nih.gov/pubmed/39876710 https://www.proquest.com/docview/3160940111 https://pubmed.ncbi.nlm.nih.gov/PMC11760979 |
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