Plant and soil health in organic strawberry farms – Greater importance of fungal trophic modes and networks than α-diversity of the mycobiome
The mycobiome composition and health status of host plants are closely related. These relationships should be studied and recognized, as they may form the basis of future sustainable agriculture. The aim of this study was to select relevant biological indicators for monitoring soil microbial diversi...
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| Published in | Applied soil ecology : a section of Agriculture, ecosystems & environment Vol. 188; p. 104925 |
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| Main Authors | , , |
| Format | Journal Article |
| Language | English |
| Published |
Elsevier B.V
01.08.2023
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| Subjects | |
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| Abstract | The mycobiome composition and health status of host plants are closely related. These relationships should be studied and recognized, as they may form the basis of future sustainable agriculture. The aim of this study was to select relevant biological indicators for monitoring soil microbial diversity by revealing characteristic differences between the mycobiomes of various soil compartments (bulk and rhizosphere) and plant niches (roots and shoots) from 13 healthy and diseased organic strawberry farms. The results of this study show that α-diversity of the mycobiome is less important in shaping plant health than fungal trophic mode composition. Healthy soil niches and roots contain less core taxa, but more differentially abundant taxa, than unhealthy ones. The results also suggest that plant health was shaped by more than just the most abundant fungal taxa, indicating that rare taxa should not be neglected in the analysis of mycobiome structure. We also demonstrate that fungal communities in the soil and plant niches from healthy strawberry farms create more stable and steady networks as compared to those from unhealthy farms. Finally, we show that the mycobiome roots-shoot axis is an important trait to consider in unhealthy plants from strawberry farms.
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•We compared mycobiome of healthy and unhealthy strawberry soil and plant niches.•Healthy roots of strawberry had higher alpha-diversity of mycobiome than unhealthy.•Fungal networks of healthy soil and plant niches were more stable than unhealthy.•Rare microorganisms should not be neglected in such analyses. |
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| AbstractList | The mycobiome composition and health status of host plants are closely related. These relationships should be studied and recognized, as they may form the basis of future sustainable agriculture. The aim of this study was to select relevant biological indicators for monitoring soil microbial diversity by revealing characteristic differences between the mycobiomes of various soil compartments (bulk and rhizosphere) and plant niches (roots and shoots) from 13 healthy and diseased organic strawberry farms. The results of this study show that α-diversity of the mycobiome is less important in shaping plant health than fungal trophic mode composition. Healthy soil niches and roots contain less core taxa, but more differentially abundant taxa, than unhealthy ones. The results also suggest that plant health was shaped by more than just the most abundant fungal taxa, indicating that rare taxa should not be neglected in the analysis of mycobiome structure. We also demonstrate that fungal communities in the soil and plant niches from healthy strawberry farms create more stable and steady networks as compared to those from unhealthy farms. Finally, we show that the mycobiome roots-shoot axis is an important trait to consider in unhealthy plants from strawberry farms. The mycobiome composition and health status of host plants are closely related. These relationships should be studied and recognized, as they may form the basis of future sustainable agriculture. The aim of this study was to select relevant biological indicators for monitoring soil microbial diversity by revealing characteristic differences between the mycobiomes of various soil compartments (bulk and rhizosphere) and plant niches (roots and shoots) from 13 healthy and diseased organic strawberry farms. The results of this study show that α-diversity of the mycobiome is less important in shaping plant health than fungal trophic mode composition. Healthy soil niches and roots contain less core taxa, but more differentially abundant taxa, than unhealthy ones. The results also suggest that plant health was shaped by more than just the most abundant fungal taxa, indicating that rare taxa should not be neglected in the analysis of mycobiome structure. We also demonstrate that fungal communities in the soil and plant niches from healthy strawberry farms create more stable and steady networks as compared to those from unhealthy farms. Finally, we show that the mycobiome roots-shoot axis is an important trait to consider in unhealthy plants from strawberry farms. [Display omitted] •We compared mycobiome of healthy and unhealthy strawberry soil and plant niches.•Healthy roots of strawberry had higher alpha-diversity of mycobiome than unhealthy.•Fungal networks of healthy soil and plant niches were more stable than unhealthy.•Rare microorganisms should not be neglected in such analyses. |
| ArticleNumber | 104925 |
| Author | Frąc, Magdalena Panek, Jacek Siegieda, Dominika |
| Author_xml | – sequence: 1 givenname: Dominika orcidid: 0000-0001-8547-8510 surname: Siegieda fullname: Siegieda, Dominika – sequence: 2 givenname: Jacek orcidid: 0000-0002-9217-5902 surname: Panek fullname: Panek, Jacek – sequence: 3 givenname: Magdalena orcidid: 0000-0001-9437-3139 surname: Frąc fullname: Frąc, Magdalena email: m.frac@ipan.lublin.pl |
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| CitedBy_id | crossref_primary_10_1186_s12870_024_05415_8 crossref_primary_10_3390_microorganisms12112350 crossref_primary_10_1016_j_apsoil_2024_105642 crossref_primary_10_3389_fmicb_2023_1286740 |
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| Keywords | Soil and plant health Illumina MiSeq Mycobiome Organic strawberries ITS1 metabarcoding Metataxonomy |
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| Title | Plant and soil health in organic strawberry farms – Greater importance of fungal trophic modes and networks than α-diversity of the mycobiome |
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