Companilactobacillus pabuli sp. nov., a lactic acid bacterium isolated from animal feed
A Gram-positive, facultative anaerobic, catalase-negative, non-motile, non-spore-forming and rod-shaped lactic acid bacterium strain, denoted as NFFJ11 and isolated from total mixed fermentation feed in the Republic of Korea, was characterized through polyphasic approaches, including sequence analys...
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Published in | International journal of systematic and evolutionary microbiology Vol. 71; no. 3 |
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Main Authors | , , , , , , , , , |
Format | Journal Article |
Language | English |
Published |
England
01.01.2021
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Subjects | |
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Abstract | A Gram-positive, facultative anaerobic, catalase-negative, non-motile, non-spore-forming and rod-shaped lactic acid bacterium strain, denoted as NFFJ11
and isolated from total mixed fermentation feed in the Republic of Korea, was characterized through polyphasic approaches, including sequence analyses of the 16S rRNA gene and housekeeping genes (
and
), determination of average nucleotide identity and
DNA-DNA hybridization, fatty acid methyl ester analysis, and phenotypic characterization. Phylogenetic analyses based on 16S rRNA,
and
gene sequences revealed that strain NFFJ11
belonged to the genus
. The 16S rRNA gene sequence of strain NFFJ11
exhibited high similarity to
S215
(99.66 %),
Rv4 na
(99.53 %),
LMG 23699
(99.19 %),
YM 0097
(99.06 %),
HBUAS52074
(98.86 %) and
S4-3
(98.66 %). However, average nucleotide identity and
DNA-DNA hybridization values for these type strains were in the range of 79.90-92.93 % and 23.80-49.30 %, respectively, which offer evidence that strain NFFJ11
belongs to a novel species of the genus
. The cell-wall peptidoglycan type was A4α (l-Lys-d-Asp) and the G+C content of the genomic DNA was 35.7 mol%. The main fatty acids of strain NFFJ11
were C
9
(43.3 %), C
(20.1 %) and summed feature 7 (18.3 %; comprising any combination of C
7
, C
6
and C
cyclo
10
). Through polyphasic taxonomic analysis, it was observed that strain NFFJ11
represents a novel species belonging to the genus
, for which the name
sp. nov. is proposed. The type strain is NFFJ11
(= KACC 21771
= JCM 34088
). |
---|---|
AbstractList | A Gram-positive, facultative anaerobic, catalase-negative, non-motile, non-spore-forming and rod-shaped lactic acid bacterium strain, denoted as NFFJ11
T
and isolated from total mixed fermentation feed in the Republic of Korea, was characterized through polyphasic approaches, including sequence analyses of the 16S rRNA gene and housekeeping genes (
rpoA
and
pheS
), determination of average nucleotide identity and
in silico
DNA–DNA hybridization, fatty acid methyl ester analysis, and phenotypic characterization. Phylogenetic analyses based on 16S rRNA,
rpoA
and
pheS
gene sequences revealed that strain NFFJ11
T
belonged to the genus
Companilactobacillus
. The 16S rRNA gene sequence of strain NFFJ11
T
exhibited high similarity to
Companilactobacillus formosensis
S215
T
(99.66 %),
Companilactobacillus farciminis
Rv4 na
T
(99.53 %),
Companilactobacillus crustorum
LMG 23699
T
(99.19 %),
Companilactobacillus futsaii
YM 0097
T
(99.06 %),
Companilactobacillus zhachilii
HBUAS52074
T
(98.86 %) and
Companilactobacillus heilongiiangensis
S4-3
T
(98.66 %). However, average nucleotide identity and
in silico
DNA–DNA hybridization values for these type strains were in the range of 79.90–92.93 % and 23.80–49.30 %, respectively, which offer evidence that strain NFFJ11
T
belongs to a novel species of the genus
Companilactobacillus
. The cell-wall peptidoglycan type was A4α (
l
-Lys
–d
-Asp) and the G+C content of the genomic DNA was 35.7 mol%. The main fatty acids of strain NFFJ11
T
were C
18 : 1
ω
9
c
(43.3 %), C
16 : 0
(20.1 %) and summed feature 7 (18.3 %; comprising any combination of C
19 : 1
ω
7
c
, C
19 : 1
ω
6
c
and C
19 : 0
cyclo
ω
10
c
). Through polyphasic taxonomic analysis, it was observed that strain NFFJ11
T
represents a novel species belonging to the genus
Companilactobacillus
, for which the name
Companilactobacillus pabuli
sp. nov. is proposed. The type strain is NFFJ11
T
(= KACC 21771
T
= JCM 34088
T
). A Gram-positive, facultative anaerobic, catalase-negative, non-motile, non-spore-forming and rod-shaped lactic acid bacterium strain, denoted as NFFJ11 and isolated from total mixed fermentation feed in the Republic of Korea, was characterized through polyphasic approaches, including sequence analyses of the 16S rRNA gene and housekeeping genes ( and ), determination of average nucleotide identity and DNA-DNA hybridization, fatty acid methyl ester analysis, and phenotypic characterization. Phylogenetic analyses based on 16S rRNA, and gene sequences revealed that strain NFFJ11 belonged to the genus . The 16S rRNA gene sequence of strain NFFJ11 exhibited high similarity to S215 (99.66 %), Rv4 na (99.53 %), LMG 23699 (99.19 %), YM 0097 (99.06 %), HBUAS52074 (98.86 %) and S4-3 (98.66 %). However, average nucleotide identity and DNA-DNA hybridization values for these type strains were in the range of 79.90-92.93 % and 23.80-49.30 %, respectively, which offer evidence that strain NFFJ11 belongs to a novel species of the genus . The cell-wall peptidoglycan type was A4α (l-Lys-d-Asp) and the G+C content of the genomic DNA was 35.7 mol%. The main fatty acids of strain NFFJ11 were C 9 (43.3 %), C (20.1 %) and summed feature 7 (18.3 %; comprising any combination of C 7 , C 6 and C cyclo 10 ). Through polyphasic taxonomic analysis, it was observed that strain NFFJ11 represents a novel species belonging to the genus , for which the name sp. nov. is proposed. The type strain is NFFJ11 (= KACC 21771 = JCM 34088 ). |
Author | Jung, Ji Young Chung, Eu Jin Kwon, Young Chul Kim, Sang Cheol Jin, Hyun Mi Kang, Hye Kyeong Ryu, Byung-Gon Seo, Min Jeong Han, Sang-Soo Eun, Jong Jun |
Author_xml | – sequence: 1 givenname: Ji Young surname: Jung fullname: Jung, Ji Young organization: Nakdonggang National Institute of Biological Resources, 137, Donam 2-gil, Sangju-si, Gyeongsangbuk-do 37242, Republic of Korea – sequence: 2 givenname: Hye Kyeong surname: Kang fullname: Kang, Hye Kyeong organization: Nakdonggang National Institute of Biological Resources, 137, Donam 2-gil, Sangju-si, Gyeongsangbuk-do 37242, Republic of Korea – sequence: 3 givenname: Hyun Mi surname: Jin fullname: Jin, Hyun Mi organization: Nakdonggang National Institute of Biological Resources, 137, Donam 2-gil, Sangju-si, Gyeongsangbuk-do 37242, Republic of Korea – sequence: 4 givenname: Sang-Soo surname: Han fullname: Han, Sang-Soo organization: Nakdonggang National Institute of Biological Resources, 137, Donam 2-gil, Sangju-si, Gyeongsangbuk-do 37242, Republic of Korea – sequence: 5 givenname: Young Chul surname: Kwon fullname: Kwon, Young Chul organization: Nonghyup TMR agricultural Co., Ltd., 65, Ogwang 1-gil, Gongseong-myeon, Sangju-si, Gyeongsangbuk-do 37268, Republic of Korea – sequence: 6 givenname: Jong Jun surname: Eun fullname: Eun, Jong Jun organization: Nonghyup TMR agricultural Co., Ltd., 65, Ogwang 1-gil, Gongseong-myeon, Sangju-si, Gyeongsangbuk-do 37268, Republic of Korea – sequence: 7 givenname: Sang Cheol surname: Kim fullname: Kim, Sang Cheol organization: Nakdonggang National Institute of Biological Resources, 137, Donam 2-gil, Sangju-si, Gyeongsangbuk-do 37242, Republic of Korea – sequence: 8 givenname: Min Jeong surname: Seo fullname: Seo, Min Jeong organization: Nakdonggang National Institute of Biological Resources, 137, Donam 2-gil, Sangju-si, Gyeongsangbuk-do 37242, Republic of Korea – sequence: 9 givenname: Byung-Gon surname: Ryu fullname: Ryu, Byung-Gon organization: Nakdonggang National Institute of Biological Resources, 137, Donam 2-gil, Sangju-si, Gyeongsangbuk-do 37242, Republic of Korea – sequence: 10 givenname: Eu Jin surname: Chung fullname: Chung, Eu Jin organization: Nakdonggang National Institute of Biological Resources, 137, Donam 2-gil, Sangju-si, Gyeongsangbuk-do 37242, Republic of Korea |
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Cites_doi | 10.1128/MRA.01177-19 10.1099/ijsem.0.002429 10.1128/BR.36.4.407-477.1972 10.1186/1471-2105-14-60 10.1099/ijsem.0.002786 10.1099/ijsem.0.003362 10.1186/gb-2004-5-2-r12 10.1186/1471-2164-14-913 10.1099/ijsem.0.002196 10.1038/nmeth.2474 10.1016/S0723-2020(83)80055-1 10.1093/nar/29.12.2607 10.1099/ijs.0.032367-0 10.1099/ijsem.0.000504 10.1099/ijs.0.070938-0 10.1099/ijsem.0.004107 10.1093/nar/22.22.4673 10.1099/ijs.0.030619-0 10.1128/JB.187.18.6258-6264.2005 10.1099/ijs.0.64836-0 10.1099/ijsem.0.002758 10.1007/s10482-017-0844-4 10.1128/AEM.01695-08 10.1093/molbev/msw054 10.1099/ijs.0.059774-0 10.1007/s10482-018-1019-7 10.1099/ijs.0.053355-0 10.1099/ijsem.0.001755 10.1099/ijsem.0.002516 |
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Keywords | animal feed new species Companilactobacillus pabuli sp. nov |
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References | Smibert (R31) 1994 da (R30) 2015; 65 R21 R20 R23 R22 R25 R24 R27 R26 R29 R28 R1 R2 R3 R4 R5 Miller (R33) 1982; 18 R8 R9 R10 R32 R12 R11 R14 R13 R16 R15 R18 R17 R19 Goyal (R6) 2010; 7 Beijerinck (R7) 1901; 6 |
References_xml | – volume: 6 start-page: 212 year: 1901 ident: R7 article-title: Sur les ferments lactiques de l’industrie publication-title: Archiv Néerlandaises des Sciences Exactes et Naturelles contributor: fullname: Beijerinck – start-page: 607 volume-title: Methods for General and Molecular Bacteriology year: 1994 ident: R31 contributor: fullname: Smibert – ident: R21 doi: 10.1128/MRA.01177-19 – ident: R1 doi: 10.1099/ijsem.0.002429 – volume: 7 start-page: 907 year: 2010 ident: R6 article-title: Isolation and identification of genus Lactobacillus from different curd samples publication-title: Biosci Biotechnol Res Asia contributor: fullname: Goyal – ident: R32 doi: 10.1128/BR.36.4.407-477.1972 – ident: R26 doi: 10.1186/1471-2105-14-60 – ident: R8 doi: 10.1099/ijsem.0.002786 – ident: R18 doi: 10.1099/ijsem.0.003362 – ident: R23 doi: 10.1186/gb-2004-5-2-r12 – ident: R27 doi: 10.1186/1471-2164-14-913 – ident: R5 doi: 10.1099/ijsem.0.002196 – ident: R22 doi: 10.1038/nmeth.2474 – ident: R16 doi: 10.1016/S0723-2020(83)80055-1 – ident: R28 doi: 10.1093/nar/29.12.2607 – ident: R3 doi: 10.1099/ijs.0.032367-0 – volume: 65 start-page: 3841 year: 2015 ident: R30 article-title: Pedobacter ardleyensis sp. nov., isolated from soil of the Ardley Island, South Shetland Islands in Antarctica publication-title: Int J Syst Evol Microbiol doi: 10.1099/ijsem.0.000504 contributor: fullname: da – ident: R14 doi: 10.1099/ijs.0.070938-0 – ident: R9 doi: 10.1099/ijsem.0.004107 – ident: R12 doi: 10.1093/nar/22.22.4673 – ident: R15 doi: 10.1099/ijs.0.030619-0 – ident: R29 doi: 10.1128/JB.187.18.6258-6264.2005 – ident: R17 doi: 10.1099/ijs.0.64836-0 – ident: R2 doi: 10.1099/ijsem.0.002758 – ident: R24 doi: 10.1007/s10482-017-0844-4 – ident: R10 doi: 10.1128/AEM.01695-08 – ident: R13 doi: 10.1093/molbev/msw054 – ident: R20 doi: 10.1099/ijs.0.059774-0 – ident: R4 doi: 10.1007/s10482-018-1019-7 – volume: 18 start-page: 861 year: 1982 ident: R33 article-title: Single derivatization method for routine analysis of bacterial whole-cell fatty acid methyl esters. including hydroxy acid publication-title: J Clin Microbiol contributor: fullname: Miller – ident: R19 doi: 10.1099/ijs.0.053355-0 – ident: R11 doi: 10.1099/ijsem.0.001755 – ident: R25 doi: 10.1099/ijsem.0.002516 |
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Snippet | A Gram-positive, facultative anaerobic, catalase-negative, non-motile, non-spore-forming and rod-shaped lactic acid bacterium strain, denoted as NFFJ11
and... A Gram-positive, facultative anaerobic, catalase-negative, non-motile, non-spore-forming and rod-shaped lactic acid bacterium strain, denoted as NFFJ11 T and... |
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Title | Companilactobacillus pabuli sp. nov., a lactic acid bacterium isolated from animal feed |
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