Wheat rhizosphere fungal community is affected by tillage and plant growth
Agricultural management measures, including tillage, considerably alter the rhizosphere fungal community; however, traditional snapshot sampling fail to represent the rhizosphere fungal community patterns over time. Here, we conducted a continuous study of wheat rhizosphere fungal communities throug...
Saved in:
Published in | Agriculture, ecosystems & environment Vol. 317; p. 107475 |
---|---|
Main Authors | , , , , , |
Format | Journal Article |
Language | English |
Published |
Elsevier B.V
01.09.2021
|
Subjects | |
Online Access | Get full text |
Cover
Loading…
Abstract | Agricultural management measures, including tillage, considerably alter the rhizosphere fungal community; however, traditional snapshot sampling fail to represent the rhizosphere fungal community patterns over time. Here, we conducted a continuous study of wheat rhizosphere fungal communities through long-term tillage experiments (consisting of conventional and conservation tillage) to clarify tillage and growth stage effects. Tillage practices always affected rhizosphere fungal communities (R2 = 18%), and these effects significantly differed between plant growth stages. Drastic changes in plant phenotypes during the growing season may have driven the changes in rhizosphere fungal communities. Specifically, in the tillering stage (the early period of wheat growth), plant traits dynamics and the abundance of two crop-tillage sensitive modules were highly correlated. The conservation tillage abundant module was mainly composed of saprotrophs, whereas pathogens constituted the majority in modules enriched by conventional tillage. These results indicate that it is possible to influence the rhizosphere fungal community structure and function through agricultural management mediated by plant growth. Manipulation of tillage-sensitive OTUs and early rhizosphere fungal community modules can provide new opportunities for developing sustainable and highly productive agroecosystems.
•How rhizosphere fungi respond to tillage and crop growth remain unknown.•Crop growth can severely affect the rhizosphere fungal community.•Specific species and modules in the networks can significantly respond to tillage. |
---|---|
AbstractList | Agricultural management measures, including tillage, considerably alter the rhizosphere fungal community; however, traditional snapshot sampling fail to represent the rhizosphere fungal community patterns over time. Here, we conducted a continuous study of wheat rhizosphere fungal communities through long-term tillage experiments (consisting of conventional and conservation tillage) to clarify tillage and growth stage effects. Tillage practices always affected rhizosphere fungal communities (R² = 18%), and these effects significantly differed between plant growth stages. Drastic changes in plant phenotypes during the growing season may have driven the changes in rhizosphere fungal communities. Specifically, in the tillering stage (the early period of wheat growth), plant traits dynamics and the abundance of two crop-tillage sensitive modules were highly correlated. The conservation tillage abundant module was mainly composed of saprotrophs, whereas pathogens constituted the majority in modules enriched by conventional tillage. These results indicate that it is possible to influence the rhizosphere fungal community structure and function through agricultural management mediated by plant growth. Manipulation of tillage-sensitive OTUs and early rhizosphere fungal community modules can provide new opportunities for developing sustainable and highly productive agroecosystems. Agricultural management measures, including tillage, considerably alter the rhizosphere fungal community; however, traditional snapshot sampling fail to represent the rhizosphere fungal community patterns over time. Here, we conducted a continuous study of wheat rhizosphere fungal communities through long-term tillage experiments (consisting of conventional and conservation tillage) to clarify tillage and growth stage effects. Tillage practices always affected rhizosphere fungal communities (R2 = 18%), and these effects significantly differed between plant growth stages. Drastic changes in plant phenotypes during the growing season may have driven the changes in rhizosphere fungal communities. Specifically, in the tillering stage (the early period of wheat growth), plant traits dynamics and the abundance of two crop-tillage sensitive modules were highly correlated. The conservation tillage abundant module was mainly composed of saprotrophs, whereas pathogens constituted the majority in modules enriched by conventional tillage. These results indicate that it is possible to influence the rhizosphere fungal community structure and function through agricultural management mediated by plant growth. Manipulation of tillage-sensitive OTUs and early rhizosphere fungal community modules can provide new opportunities for developing sustainable and highly productive agroecosystems. •How rhizosphere fungi respond to tillage and crop growth remain unknown.•Crop growth can severely affect the rhizosphere fungal community.•Specific species and modules in the networks can significantly respond to tillage. |
ArticleNumber | 107475 |
Author | Liao, Yuncheng Li, Tong Li, Yüze Han, Juan Wang, Ziting Zhao, Deqiang |
Author_xml | – sequence: 1 givenname: Yüze surname: Li fullname: Li, Yüze organization: College of Agronomy, Northwest A&F University, Yangling, Shaanxi 712100, PR China – sequence: 2 givenname: Ziting surname: Wang fullname: Wang, Ziting email: zitingwang@gxu.edu.cn organization: College of Agronomy, Northwest A&F University, Yangling, Shaanxi 712100, PR China – sequence: 3 givenname: Tong surname: Li fullname: Li, Tong organization: College of Agronomy, Northwest A&F University, Yangling, Shaanxi 712100, PR China – sequence: 4 givenname: Deqiang surname: Zhao fullname: Zhao, Deqiang organization: College of Agronomy, Northwest A&F University, Yangling, Shaanxi 712100, PR China – sequence: 5 givenname: Juan surname: Han fullname: Han, Juan email: hjepost@nwsuaf.edu.cn organization: College of Agronomy, Northwest A&F University, Yangling, Shaanxi 712100, PR China – sequence: 6 givenname: Yuncheng surname: Liao fullname: Liao, Yuncheng email: yunchengliao@163.com organization: College of Agronomy, Northwest A&F University, Yangling, Shaanxi 712100, PR China |
BookMark | eNp9kE1PAyEQhjnUxLb6Bzxx9LIVlv1q4sU0fqaJF41HMmWHlmYXKlBN_fXSrCcP5UIyzMPM-0zIyDqLhFxxNuOMVzfbGawRZznLeSrURV2OyDg91FnTsPk5mYSwZenkohmTl48NQqR-Y35c2G3QI9V7u4aOKtf3e2vigZpAQWtUEVu6OtBoui5NoGBbuuvARrr27jtuLsiZhi7g5d89Je8P92-Lp2z5-vi8uFtmSggRM2wVhxIaNS_nwFlRpnJdIFZYq1qLYoUlihz4vGywUsUKQHNgStctq3jZVGJKrod_d9597jFE2ZugMC1l0e2DzMu6ECm9KFJrPrQq70LwqOXOmx78QXImj7LkVh5lyaMsOchKUPMPUiZCNM5GD6Y7jd4OKKb8Xwa9DMqgVdgan_zJ1plT-C8f3Im1 |
CitedBy_id | crossref_primary_10_3390_agronomy13010237 crossref_primary_10_1016_j_rhisph_2022_100605 crossref_primary_10_1016_j_agee_2022_108082 crossref_primary_10_3390_agronomy13082111 crossref_primary_10_1111_sum_70025 crossref_primary_10_1016_j_apsoil_2024_105711 crossref_primary_10_3389_fpls_2022_973919 crossref_primary_10_1146_annurev_phyto_121423_042037 crossref_primary_10_1016_j_apsoil_2025_105934 crossref_primary_10_1016_j_jia_2023_02_026 crossref_primary_10_1016_j_soilbio_2022_108881 crossref_primary_10_1002_ldr_4414 crossref_primary_10_1016_j_micres_2023_127349 crossref_primary_10_3390_agronomy13061571 crossref_primary_10_1002_ldr_4666 crossref_primary_10_1007_s11104_023_06109_0 crossref_primary_10_3390_ijms24065701 crossref_primary_10_1007_s13580_023_00516_z crossref_primary_10_3390_plants12223822 crossref_primary_10_1007_s11274_023_03827_6 crossref_primary_10_1016_j_agee_2021_107817 crossref_primary_10_1016_j_apsoil_2022_104490 |
Cites_doi | 10.1038/nrmicro2832 10.1093/bioinformatics/btu170 10.1186/s40168-019-0750-2 10.1016/j.apsoil.2017.09.032 10.1016/j.apsoil.2020.103510 10.1126/science.1256688 10.1111/mec.13978 10.3852/11-027 10.1038/ismej.2017.90 10.1016/S0065-2113(10)07001-X 10.1016/j.funeco.2015.06.006 10.1007/s11104-014-2306-3 10.3389/fmicb.2017.01301 10.1016/j.ejsobi.2014.01.002 10.1016/j.geoderma.2004.03.005 10.1016/j.scitotenv.2019.136326 10.1038/ismej.2013.50 10.1038/s41396-020-00796-8 10.1016/j.soilbio.2015.03.006 10.1016/j.fcr.2020.107867 10.3389/fpls.2019.01741 10.1016/j.soilbio.2011.11.012 10.1111/j.1469-8137.2012.04348.x 10.1016/j.still.2019.104501 10.1186/s13059-019-1825-x 10.1016/j.still.2019.104302 10.1016/j.apsoil.2010.09.011 10.1371/journal.ppat.1003996 10.1094/PBIOMES-12-18-0057-R 10.3389/fmicb.2017.01127 10.1016/j.soilbio.2003.10.026 10.1038/s41559-019-1084-y 10.1071/AR9910013 10.2134/agronj1994.00021962008600050004x 10.1093/bioinformatics/btp616 10.1101/863399 10.1016/j.copbio.2009.09.014 10.1093/bioinformatics/btr381 10.1186/s40168-019-0756-9 10.1111/1574-6976.12001 10.1007/s13593-017-0454-6 10.1016/j.mib.2017.03.008 10.1126/science.295.5562.2051 10.1016/j.soilbio.2019.107581 10.1111/j.1469-8137.2009.03160.x 10.1111/ele.12630 10.2134/agronj2018.09.0597 10.1016/j.soilbio.2008.10.027 10.1186/s13059-020-01999-0 10.1023/A:1004205828485 10.4141/P03-160 10.1038/nmeth.f.303 10.1016/j.ejsobi.2009.06.003 10.1007/s11356-017-8505-8 10.1111/nph.12235 10.1016/j.funbio.2012.04.003 10.1111/nph.16171 10.1016/j.soilbio.2018.11.010 10.22438/jeb/38/2/MS-179 10.1038/s41579-018-0024-1 10.1016/j.soilbio.2018.09.001 10.1016/j.soilbio.2020.107717 10.1186/s40168-017-0389-9 10.3389/fpls.2017.00192 10.1038/ismej.2016.108 10.1038/nature03239 |
ContentType | Journal Article |
Copyright | 2021 Elsevier B.V. |
Copyright_xml | – notice: 2021 Elsevier B.V. |
DBID | AAYXX CITATION 7S9 L.6 |
DOI | 10.1016/j.agee.2021.107475 |
DatabaseName | CrossRef AGRICOLA AGRICOLA - Academic |
DatabaseTitle | CrossRef AGRICOLA AGRICOLA - Academic |
DatabaseTitleList | AGRICOLA |
DeliveryMethod | fulltext_linktorsrc |
Discipline | Agriculture Environmental Sciences |
ExternalDocumentID | 10_1016_j_agee_2021_107475 S0167880921001791 |
GroupedDBID | --K --M .~1 0R~ 1B1 1RT 1~. 1~5 23M 4.4 457 4G. 53G 5GY 5VS 7-5 71M 8P~ 9JM AABNK AACTN AAEDT AAEDW AAHBH AAIKJ AAKOC AALRI AAOAW AAQFI AATLK AATTM AAXKI AAXUO ABBQC ABFNM ABFRF ABFYP ABGRD ABJNI ABKYH ABLST ABMAC ABMZM ABRWV ACDAQ ACGFS ACIUM ACIWK ACPRK ACRLP ADBBV ADEZE ADQTV AEBSH AEFWE AEIPS AEKER AENEX AEQOU AEXOQ AFRAH AFTJW AFXIZ AGUBO AGYEJ AHEUO AHHHB AIEXJ AIKHN AITUG AJRQY AKIFW AKRWK ALMA_UNASSIGNED_HOLDINGS AMRAJ ANKPU ANZVX AXJTR BKOJK BLECG BLXMC BNPGV CS3 EBS EFJIC EO8 EO9 EP2 EP3 F5P FDB FIRID FNPLU FYGXN G-Q GBLVA IHE J1W KCYFY KOM LW9 LY9 M41 MO0 N9A O-L O9- OAUVE OZT P-8 P-9 P2P PC. Q38 ROL RPZ SAB SCC SCU SDF SDG SDP SEN SES SNL SPCBC SSA SSJ SSZ T5K Y6R ~02 ~G- ~KM 186 AALCJ AAQXK AAYWO AAYXX ABWVN ABXDB ACIEU ACMHX ACRPL ACVFH ADCNI ADMUD ADNMO ADSLC ADXHL AEGFY AEUPX AFJKZ AFPUW AGCQF AGHFR AGQPQ AGRNS AGWPP AI. AIGII AIIUN AKBMS AKYEP APXCP ASPBG AVWKF AZFZN CITATION EJD FEDTE FGOYB G-2 HLV HMC HVGLF HZ~ R2- RIG SEW SSH VH1 WUQ 7S9 L.6 |
ID | FETCH-LOGICAL-c333t-edc1a5a8c959a1045c3374ee6e7c7f34be5e32a1958e6c4baaf1a0cf7d0615863 |
IEDL.DBID | .~1 |
ISSN | 0167-8809 |
IngestDate | Fri Jul 11 08:34:09 EDT 2025 Thu Apr 24 22:57:32 EDT 2025 Tue Jul 01 01:28:02 EDT 2025 Sun Apr 06 06:54:07 EDT 2025 |
IsPeerReviewed | true |
IsScholarly | true |
Keywords | Fungal community Rhizosphere Plant-microbe interaction Plant traits Tillage |
Language | English |
LinkModel | DirectLink |
MergedId | FETCHMERGED-LOGICAL-c333t-edc1a5a8c959a1045c3374ee6e7c7f34be5e32a1958e6c4baaf1a0cf7d0615863 |
Notes | ObjectType-Article-1 SourceType-Scholarly Journals-1 ObjectType-Feature-2 content type line 23 |
PQID | 2574320234 |
PQPubID | 24069 |
ParticipantIDs | proquest_miscellaneous_2574320234 crossref_primary_10_1016_j_agee_2021_107475 crossref_citationtrail_10_1016_j_agee_2021_107475 elsevier_sciencedirect_doi_10_1016_j_agee_2021_107475 |
ProviderPackageCode | CITATION AAYXX |
PublicationCentury | 2000 |
PublicationDate | 2021-09-01 2021-09-00 20210901 |
PublicationDateYYYYMMDD | 2021-09-01 |
PublicationDate_xml | – month: 09 year: 2021 text: 2021-09-01 day: 01 |
PublicationDecade | 2020 |
PublicationTitle | Agriculture, ecosystems & environment |
PublicationYear | 2021 |
Publisher | Elsevier B.V |
Publisher_xml | – name: Elsevier B.V |
References | Lauber, Ramirez, Aanderud, Lennon, Fierer (bib34) 2013; 7 Emmett, Buckley, Drinkwater (bib19) 2020; 225 Zhang, Cheng, Feng, Sun, Zhao, Chen, Chen, Dyck, Wang, Zhang (bib65) 2017; 24 Spanu, Panstruga (bib48) 2017; 8 Tedersoo, Bahram, Polme, Koljalg, Yorou, Wijesundera, Villarreal Ruiz, Vasco-Palacios, Thu, Suija, Smith, Sharp, Saluveer, Saitta, Rosas, Riit, Ratkowsky, Pritsch, Poldmaa, Piepenbring, Phosri, Peterson, Parts, Partel, Otsing, Nouhra, Njouonkou, Nilsson, Morgado, Mayor, May, Majuakim, Lodge, Lee, Larsson, Kohout, Hosaka, Hiiesalu, Henkel, Harend, Guo, Greslebin, Grelet, Geml, Gates, Dunstan, Dunk, Drenkhan, Dearnaley, De Kesel, Dang, Chen, Buegger, Brearley, Bonito, Anslan, Abell, Kohout (bib50) 2014; 346 Kumari, Devi (bib32) 2017; 38 Wang, Z., Li, T., Wen, X., Liu, Y., Han, J., Liao, Y., Debruyn, J.M.J.F.i.M., 2017b. Fungal Communities in Rhizosphere Soil under Conservation Tillage Shift in Response to Plant Growth. 8, 1301. Xu, Wang, Jin, Liu, Zhang, Liu (bib62) 2009; 41 Hartman, Van Der Heijden, Wittwer, Banerjee, Walser, Schlaeppi (bib26) 2018; 6 Bronick, Lal (bib9) 2005; 124 Verbruggen, van der Heijden, Rillig, Kiers (bib54) 2013; 197 Yan, Kuramae, de Hollander, Klinkhamer, van Veen (bib63) 2017; 11 Bell, Asao, Calderon, Wolk, Wallenstein (bib5) 2015; 85 Vandenkoornhuyse, Baldauf, Leyval, Straczek, Young (bib53) 2002; 295 Guo, Wan, Hua, Yin, Chu, Wang, Guo (bib24) 2020; 149 Zhou, Coventry, Gupta, Fuentes, Merchant, Kaiser, Li, Wei, Liu, Wang, Gan, Denton (bib67) 2020; 21 Zhang, Vivanco, Shen (bib66) 2017; 37 Heinze, Rauber, Joergensen (bib27) 2010; 46 Abarenkov, Henrik Nilsson, Larsson, Alexander, Eberhardt, Erland, Høiland, Kjøller, Larsson, Pennanen (bib1) 2010; 186 Robinson, McCarthy, Smyth (bib44) 2010; 26 Shi, Nuccio, Shi, He, Zhou, Firestone (bib47) 2016; 19 Schmidt, Kent, Brisson, Gaudin (bib45) 2019; 7 Zhang, Shen, Zhang, Zuo, Li, Chen (bib64) 2010 Degrune, Theodorakopoulos, Colinet, Hiel, Bodson, Taminiau, Daube, Vandenbol, Hartmann (bib15) 2017; 8 Wang, Wang, Hafeez, Zhang, Yu, Wang, Wang, Li (bib56) 2020; 255 Edgar, Haas, Clemente, Quince, Knight (bib17) 2011; 27 Bolger, Lohse, Usadel (bib8) 2014; 30 Dai, Enders, Rodrigues, Hanley, Brookes, Xu, Lehmann (bib13) 2018; 126 van der Wal, Geydan, Kuyper, de Boer (bib52) 2013; 37 Badri, Weir, van der Lelie, Vivanco (bib3) 2009; 20 Mo, Zhang, Li, Wang, Yu, Wen, Xiong, Jia, Liao (bib37) 2019; 138 Kabir (bib29) 2005; 85 Agtmaal, Straathof, Termorshuizen, Teurlincx, Hundscheid, Ruyters, Busschaert, Lievens, Boer (bib2) 2017; 121 Oyserman, B.O., Cordovez, V., Sarango Flores, S.W., Nijveen, H., Medema, M.H., Raaijmakers, J.M., 2019. Extracting the GEMs: Genotype, Environment and Microbiome interactions shaping host phenotypes. bioRxiv, 863399. Schmidt, Mitchell, Scow (bib46) 2019; 129 Gu, Wang, Kong (bib23) 2009; 45 Li, Brock, Rouchka, Cooper, Wu, O'Toole, Gill, Eteleeb, O'Brien, Rail (bib35) 2017; 12 Karimi, Siddique (bib31) 1991; 42 Unger, Kaspar (bib51) 1994; 86 Wang, Zhang, Liu, Fei, Chen, Li, Ning, Chen, Shi, Tian (bib55) 2019; 111 Nguyen, Song, Bates, Branco, Tedersoo, Menke, Schilling, Kennedy (bib39) 2016; 20 Kabir, OHalloran, Fyles, Hamel (bib30) 1997; 192 Kuzyakov, Xu (bib33) 2013; 198 Wang, Liu, Chen, Wen, Liu, Han, Liao (bib60) 2017; 37 Edwards, Santos-Medellin, Nguyen, Kilmer, Liechty, Veliz, Ni, Phillips, Sundaresan (bib18) 2019; 20 Delgado-Baquerizo, Reich, Trivedi, Eldridge, Abades, Alfaro, Bastida, Berhe, Cutler, Gallardo, Garcia-Velazquez, Hart, Hayes, He, Hseu, Hu, Kirchmair, Neuhauser, Perez, Reed, Santos, Sullivan, Trivedi, Wang, Weber-Grullon, Williams, Singh (bib16) 2020; 4 Hannula, Morriën, de Hollander, Van Der Putten, van Veen, De Boer (bib25) 2017; 11 Mello, Napoli, Murat, Morin, Marceddu, Bonfante (bib36) 2011; 103 Wang, Li, Li, Zhao, Liao (bib59) 2020; 197 Faust, Raes (bib22) 2012; 10 Wu, Wu, Saleem, Wang, Hu, Bai, Pan, Chen (bib61) 2020; 142 Jiao, Zhang, Yang, Lin, Chen, Wei (bib28) 2017; 26 Mukherjee, Chandra, Retuerto, Sikaroodi, Brown, Jurevic, Salata, Lederman, Gillevet, Ghannoum (bib38) 2014; 10 Pathan, Ceccherini, Pietramellara, Puschenreiter, Giagnoni, Arenella, Varanini, Nannpieri, Renella (bib42) 2015; 387 Wang, Li, Li, Zhao, Liao (bib58) 2020; 710 Blagodatskaya, Littschwager, Lauerer, Kuzyakov (bib6) 2014; 61 Posada, Madriñan, Rivera (bib43) 2012; 116 Banerjee, Schlaeppi, van der Heijden (bib4) 2018; 16 Bodenhausen, Somerville, Desirò, Walser, Borghi, van der Heijden, Schlaeppi (bib7) 2019; 3 Butland, Peregrin-Alvarez, Li, Yang, Yang, Canadien, Starostine, Richards, Beattie, Krogan, Davey, Parkinson, Greenblatt, Emili (bib10) 2005; 433 Chen, Waghmode, Sun, Kuramae, Hu, Liu (bib12) 2019; 7 Spedding, Hamel, Mehuys, Madramootoo (bib49) 2004; 36 Essel, Xie, Deng, Peng, Wang, Shen, Xie, Coulter, Li (bib20) 2019; 194 Pascale, Proietti, Pantelides, Stringlis (bib41) 2019; 10 Zhou, Coventry, Gupta, Fuentes, Merchant, Kaiser, Li, Wei, Liu, Wang, Gan, Denton (bib68) 2020; 21 Davinic, Fultz, Acosta-Martinez, Calderón, Cox, Dowd, Allen, Zak, Moore-Kucera (bib14) 2012; 46 Caporaso, Kuczynski, Stombaugh, Bittinger, Bushman, Costello, Fierer, Pena, Goodrich, Gordon, Huttley, Kelley, Knights, Koenig, Ley, Lozupone, McDonald, Muegge, Pirrung, Reeder, Sevinsky, Tumbaugh, Walters, Widmann, Yatsunenko, Zaneveld, Knight (bib11) 2010; 7 Fan, Delgado-Baquerizo, Guo, Wang, Zhu, Chu (bib21) 2021; 15 Essel (10.1016/j.agee.2021.107475_bib20) 2019; 194 Wang (10.1016/j.agee.2021.107475_bib56) 2020; 255 Pathan (10.1016/j.agee.2021.107475_bib42) 2015; 387 Wang (10.1016/j.agee.2021.107475_bib55) 2019; 111 Kumari (10.1016/j.agee.2021.107475_bib32) 2017; 38 Schmidt (10.1016/j.agee.2021.107475_bib46) 2019; 129 Unger (10.1016/j.agee.2021.107475_bib51) 1994; 86 Yan (10.1016/j.agee.2021.107475_bib63) 2017; 11 Fan (10.1016/j.agee.2021.107475_bib21) 2021; 15 Robinson (10.1016/j.agee.2021.107475_bib44) 2010; 26 Emmett (10.1016/j.agee.2021.107475_bib19) 2020; 225 Li (10.1016/j.agee.2021.107475_bib35) 2017; 12 Mo (10.1016/j.agee.2021.107475_bib37) 2019; 138 Bolger (10.1016/j.agee.2021.107475_bib8) 2014; 30 10.1016/j.agee.2021.107475_bib57 Bronick (10.1016/j.agee.2021.107475_bib9) 2005; 124 Butland (10.1016/j.agee.2021.107475_bib10) 2005; 433 Bell (10.1016/j.agee.2021.107475_bib5) 2015; 85 Hartman (10.1016/j.agee.2021.107475_bib26) 2018; 6 Zhang (10.1016/j.agee.2021.107475_bib64) 2010 Xu (10.1016/j.agee.2021.107475_bib62) 2009; 41 Tedersoo (10.1016/j.agee.2021.107475_bib50) 2014; 346 Spanu (10.1016/j.agee.2021.107475_bib48) 2017; 8 Verbruggen (10.1016/j.agee.2021.107475_bib54) 2013; 197 Kuzyakov (10.1016/j.agee.2021.107475_bib33) 2013; 198 Guo (10.1016/j.agee.2021.107475_bib24) 2020; 149 Dai (10.1016/j.agee.2021.107475_bib13) 2018; 126 Kabir (10.1016/j.agee.2021.107475_bib29) 2005; 85 Banerjee (10.1016/j.agee.2021.107475_bib4) 2018; 16 Delgado-Baquerizo (10.1016/j.agee.2021.107475_bib16) 2020; 4 Davinic (10.1016/j.agee.2021.107475_bib14) 2012; 46 Zhang (10.1016/j.agee.2021.107475_bib65) 2017; 24 Vandenkoornhuyse (10.1016/j.agee.2021.107475_bib53) 2002; 295 Karimi (10.1016/j.agee.2021.107475_bib31) 1991; 42 Wang (10.1016/j.agee.2021.107475_bib59) 2020; 197 Wang (10.1016/j.agee.2021.107475_bib58) 2020; 710 Caporaso (10.1016/j.agee.2021.107475_bib11) 2010; 7 Degrune (10.1016/j.agee.2021.107475_bib15) 2017; 8 10.1016/j.agee.2021.107475_bib40 Hannula (10.1016/j.agee.2021.107475_bib25) 2017; 11 Blagodatskaya (10.1016/j.agee.2021.107475_bib6) 2014; 61 Shi (10.1016/j.agee.2021.107475_bib47) 2016; 19 Agtmaal (10.1016/j.agee.2021.107475_bib2) 2017; 121 Heinze (10.1016/j.agee.2021.107475_bib27) 2010; 46 Wu (10.1016/j.agee.2021.107475_bib61) 2020; 142 Abarenkov (10.1016/j.agee.2021.107475_bib1) 2010; 186 Zhou (10.1016/j.agee.2021.107475_bib68) 2020; 21 Kabir (10.1016/j.agee.2021.107475_bib30) 1997; 192 Schmidt (10.1016/j.agee.2021.107475_bib45) 2019; 7 Bodenhausen (10.1016/j.agee.2021.107475_bib7) 2019; 3 Faust (10.1016/j.agee.2021.107475_bib22) 2012; 10 Spedding (10.1016/j.agee.2021.107475_bib49) 2004; 36 Wang (10.1016/j.agee.2021.107475_bib60) 2017; 37 van der Wal (10.1016/j.agee.2021.107475_bib52) 2013; 37 Mello (10.1016/j.agee.2021.107475_bib36) 2011; 103 Gu (10.1016/j.agee.2021.107475_bib23) 2009; 45 Pascale (10.1016/j.agee.2021.107475_bib41) 2019; 10 Mukherjee (10.1016/j.agee.2021.107475_bib38) 2014; 10 Zhang (10.1016/j.agee.2021.107475_bib66) 2017; 37 Badri (10.1016/j.agee.2021.107475_bib3) 2009; 20 Jiao (10.1016/j.agee.2021.107475_bib28) 2017; 26 Posada (10.1016/j.agee.2021.107475_bib43) 2012; 116 Zhou (10.1016/j.agee.2021.107475_bib67) 2020; 21 Edwards (10.1016/j.agee.2021.107475_bib18) 2019; 20 Nguyen (10.1016/j.agee.2021.107475_bib39) 2016; 20 Edgar (10.1016/j.agee.2021.107475_bib17) 2011; 27 Chen (10.1016/j.agee.2021.107475_bib12) 2019; 7 Lauber (10.1016/j.agee.2021.107475_bib34) 2013; 7 |
References_xml | – volume: 346 year: 2014 ident: bib50 article-title: Fungal biogeography. Global diversity and geography of soil fungi publication-title: Science – volume: 8 start-page: 192 year: 2017 ident: bib48 article-title: Editorial: biotrophic plant-microbe interactions publication-title: Front. Plant Sci. – volume: 186 start-page: 281 year: 2010 end-page: 285 ident: bib1 article-title: The UNITE database for molecular identification of fungi–recent updates and future perspectives publication-title: New Phytol. – volume: 129 start-page: 99 year: 2019 end-page: 109 ident: bib46 article-title: Cover cropping and no-till increase diversity and symbiotroph:saprotroph ratios of soil fungal communities publication-title: Soil Biol. Biochem. – volume: 19 start-page: 926 year: 2016 end-page: 936 ident: bib47 article-title: The interconnected rhizosphere: High network complexity dominates rhizosphere assemblages publication-title: Ecol. Lett. – volume: 46 start-page: 405 year: 2010 end-page: 412 ident: bib27 article-title: Influence of mouldboard plough and rotary harrow tillage on microbial biomass and nutrient stocks in two long-term experiments on loess derived Luvisols publication-title: Appl. Soil Ecol. – volume: 27 start-page: 2194 year: 2011 end-page: 2200 ident: bib17 article-title: UCHIME improves sensitivity and speed of chimera detection publication-title: Bioinformatics – volume: 37 start-page: 44 year: 2017 ident: bib60 article-title: Conservation tillage enhances the stability of the rhizosphere bacterial community responding to plant growth publication-title: Agron. Sustain. Dev. – volume: 46 start-page: 63 year: 2012 end-page: 72 ident: bib14 article-title: Pyrosequencing and mid-infrared spectroscopy reveal distinct aggregate stratification of soil bacterial communities and organic matter composition publication-title: Soil Biol. Biochem. – volume: 20 start-page: 642 year: 2009 end-page: 650 ident: bib3 article-title: Rhizosphere chemical dialogues: plant–microbe interactions publication-title: Curr. Opin. Biotechnol. – volume: 126 start-page: 159 year: 2018 end-page: 167 ident: bib13 article-title: Soil fungal taxonomic and functional community composition as affected by biochar properties publication-title: Soil Biol. Biochem. – volume: 4 start-page: 210 year: 2020 end-page: 220 ident: bib16 article-title: Multiple elements of soil biodiversity drive ecosystem functions across biomes publication-title: Nat. Ecol. Evol. – volume: 7 start-page: 146 year: 2019 ident: bib45 article-title: Agricultural management and plant selection interactively affect rhizosphere microbial community structure and nitrogen cycling publication-title: Microbiome – volume: 138 year: 2019 ident: bib37 article-title: Fate of photosynthesized carbon as regulated by long-term tillage management in a dryland wheat cropping system publication-title: Soil Biol. Biochem. – volume: 41 start-page: 919 year: 2009 end-page: 925 ident: bib62 article-title: Bacterial communities in soybean rhizosphere in response to soil type, soybean genotype, and their growth stage publication-title: Soil Biol. Biochem. – volume: 121 start-page: 152 year: 2017 end-page: 160 ident: bib2 article-title: Exploring the reservoir of potential fungal plant pathogens in agricultural soil publication-title: Appl. Soil Ecol. – volume: 11 start-page: 56 year: 2017 end-page: 66 ident: bib63 article-title: Functional traits dominate the diversity-related selection of bacterial communities in the rhizosphere publication-title: ISME J. – volume: 295 start-page: 2051 year: 2002 ident: bib53 article-title: Extensive fungal diversity in plant roots publication-title: Science – volume: 20 start-page: 241 year: 2016 end-page: 248 ident: bib39 article-title: FUNGuild: an open annotation tool for parsing fungal community datasets by ecological guild publication-title: Fungal Ecol. – reference: Oyserman, B.O., Cordovez, V., Sarango Flores, S.W., Nijveen, H., Medema, M.H., Raaijmakers, J.M., 2019. Extracting the GEMs: Genotype, Environment and Microbiome interactions shaping host phenotypes. bioRxiv, 863399. – volume: 37 start-page: 8 year: 2017 end-page: 14 ident: bib66 article-title: The unseen rhizosphere root–soil–microbe interactions for crop production publication-title: Curr. Opin. Microbiol. – volume: 7 start-page: 136 year: 2019 ident: bib12 article-title: Root-associated microbiomes of wheat under the combined effect of plant development and nitrogen fertilization publication-title: Microbiome – volume: 387 start-page: 413 year: 2015 end-page: 424 ident: bib42 article-title: Enzyme activity and microbial community structure in the rhizosphere of two maize lines differing in N use efficiency publication-title: Plant Soil – volume: 36 start-page: 499 year: 2004 end-page: 512 ident: bib49 article-title: Soil microbial dynamics in maize-growing soil under different tillage and residue management systems publication-title: Soil Biol. Biochem. – volume: 61 start-page: 41 year: 2014 end-page: 48 ident: bib6 article-title: Plant traits regulating N capture define microbial competition in the rhizosphere publication-title: Eur. J. Soil Biol. – volume: 37 start-page: 477 year: 2013 end-page: 494 ident: bib52 article-title: A thready affair: linking fungal diversity and community dynamics to terrestrial decomposition processes publication-title: FEMS Microbiol. Rev. – volume: 85 start-page: 170 year: 2015 end-page: 182 ident: bib5 article-title: Plant nitrogen uptake drives rhizosphere bacterial community assembly during plant growth publication-title: Soil Biol. Biochem. – volume: 21 start-page: 89 year: 2020 ident: bib68 article-title: The preceding root system drives the composition and function of the rhizosphere microbiome publication-title: Genome Biol. – volume: 26 start-page: 139 year: 2010 end-page: 140 ident: bib44 article-title: edgeR: a bioconductor package for differential expression analysis of digital gene expression data publication-title: Bioinformatics – volume: 8 start-page: 1127 year: 2017 ident: bib15 article-title: Temporal dynamics of soil microbial communities below the seedbed under two contrasting tillage regimes publication-title: Front. Microbiol. – volume: 10 start-page: 1741 year: 2019 ident: bib41 article-title: Modulation of the root microbiome by plant molecules: the basis for targeted disease suppression and plant growth promotion publication-title: Front. Plant Sci. – volume: 197 year: 2020 ident: bib59 article-title: Tillage practices with different soil disturbance shape the rhizosphere bacterial community throughout crop growth publication-title: Soil Tillage Res. – volume: 111 start-page: 1478 year: 2019 end-page: 1487 ident: bib55 article-title: Improving zinc concentration and bioavailability of wheat grain through combined foliar applications of zinc and pesticides publication-title: Agron. J. – volume: 7 start-page: 335 year: 2010 end-page: 336 ident: bib11 article-title: QIIME allows analysis of high-throughput community sequencing data publication-title: Nat. Methods – volume: 10 year: 2014 ident: bib38 article-title: Oral mycobiome analysis of HIV-infected patients: identification of pichia as an antagonist of opportunistic fungi publication-title: Plos Pathog. – volume: 142 year: 2020 ident: bib61 article-title: Ecological clusters based on responses of soil microbial phylotypes to precipitation explain ecosystem functions publication-title: Soil Biol. Biochem. – volume: 124 start-page: 3 year: 2005 end-page: 22 ident: bib9 article-title: Soil structure and management: a review publication-title: Geoderma – volume: 26 start-page: 923 year: 2017 end-page: 936 ident: bib28 article-title: Temporal dynamics of microbial communities in microcosms in response to pollutants publication-title: Mol. Ecol. – start-page: 1 year: 2010 end-page: 32 ident: bib64 article-title: Chapter one - rhizosphere processes and management for improving nutrient use efficiency and crop productivity: implications for China publication-title: Advances in Agronomy – volume: 30 start-page: 2114 year: 2014 end-page: 2120 ident: bib8 article-title: Trimmomatic: a flexible trimmer for Illumina sequence data publication-title: Bioinformatics – volume: 20 start-page: 221 year: 2019 ident: bib18 article-title: Soil domestication by rice cultivation results in plant-soil feedback through shifts in soil microbiota publication-title: Genome Biol. – volume: 192 start-page: 285 year: 1997 end-page: 293 ident: bib30 article-title: Seasonal changes of arbuscular mycorrhizal fungi as affected by tillage practices and fertilization: hyphal density and mycorrhizal root colonization publication-title: Plant Soil – volume: 42 start-page: 13 year: 1991 end-page: 20 ident: bib31 article-title: Crop growth and relative growth rates of old and modern wheat cultivars publication-title: Aust. J. Agric. Res. – volume: 86 start-page: 759 year: 1994 end-page: 766 ident: bib51 article-title: Soil compaction and root growth: a review publication-title: Agron. J. – reference: Wang, Z., Li, T., Wen, X., Liu, Y., Han, J., Liao, Y., Debruyn, J.M.J.F.i.M., 2017b. Fungal Communities in Rhizosphere Soil under Conservation Tillage Shift in Response to Plant Growth. 8, 1301. – volume: 24 start-page: 10108 year: 2017 end-page: 10120 ident: bib65 article-title: Effects of straw and biochar amendments on aggregate stability, soil organic carbon, and enzyme activities in the Loess Plateau, China publication-title: Environ. Sci. Pollut. R. – volume: 197 start-page: 1104 year: 2013 end-page: 1109 ident: bib54 article-title: Mycorrhizal fungal establishment in agricultural soils: factors determining inoculation success publication-title: New Phytol. – volume: 21 start-page: 89 year: 2020 ident: bib67 article-title: The preceding root system drives the composition and function of the rhizosphere microbiome publication-title: Genome Biol. – volume: 38 start-page: 277 year: 2017 end-page: 281 ident: bib32 article-title: Evaluation and standardization of growth stage of wheat against spot blotch caused by Bipolaris sorokiniana publication-title: J. Environ. Biol. – volume: 198 start-page: 656 year: 2013 end-page: 669 ident: bib33 article-title: Competition between roots and microorganisms for nitrogen: mechanisms and ecological relevance publication-title: New Phytol. – volume: 710 year: 2020 ident: bib58 article-title: Conservation tillage decreases selection pressure on community assembly in the rhizosphere of arbuscular mycorrhizal fungi publication-title: Sci. Total Environ. – volume: 15 start-page: 550 year: 2021 end-page: 561 ident: bib21 article-title: Biodiversity of key-stone phylotypes determines crop production in a 4-decade fertilization experiment publication-title: ISME J. – volume: 3 start-page: 112 year: 2019 end-page: 124 ident: bib7 article-title: Petunia- and arabidopsis-specific root microbiota responses to phosphate supplementation publication-title: Phytobiomes J. – volume: 225 start-page: 960 year: 2020 end-page: 973 ident: bib19 article-title: Plant growth rate and nitrogen uptake shape rhizosphere bacterial community composition and activity in an agricultural field publication-title: New Phytol. – volume: 85 start-page: 23 year: 2005 end-page: 29 ident: bib29 article-title: Tillage or no-tillage: Impact on mycorrhizae publication-title: Can. J. Plant Sci. – volume: 194 year: 2019 ident: bib20 article-title: Bacterial and fungal diversity in rhizosphere and bulk soil under different long-term tillage and cereal/legume rotation publication-title: Soil Tillage Res. – volume: 45 start-page: 436 year: 2009 end-page: 441 ident: bib23 article-title: Urease, invertase, dehydrogenase and polyphenoloxidase activities in paddy soil influenced by allelopathic rice variety publication-title: Eur. J. Soil Biol. – volume: 16 start-page: 567 year: 2018 end-page: 576 ident: bib4 article-title: Keystone taxa as drivers of microbiome structure and functioning publication-title: Nat. Rev. Microbiol. – volume: 6 start-page: 14 year: 2018 ident: bib26 article-title: Cropping practices manipulate abundance patterns of root and soil microbiome members paving the way to smart farming publication-title: Microbiome – volume: 12 year: 2017 ident: bib35 article-title: A comparison of per sample global scaling and per gene normalization methods for differential expression analysis of RNA-seq data publication-title: Plos One – volume: 10 start-page: 538 year: 2012 end-page: 550 ident: bib22 article-title: Microbial interactions: from networks to models publication-title: Nat. Rev. Microbiol. – volume: 116 start-page: 747 year: 2012 end-page: 755 ident: bib43 article-title: Relationships between the litter colonization by saprotrophic and arbuscular mycorrhizal fungi with depth in a tropical forest publication-title: Fungal Biol. – volume: 255 year: 2020 ident: bib56 article-title: No-tillage and subsoiling increased maize yields and soil water storage under varied rainfall distribution: A 9-year site-specific study in a semi-arid environment publication-title: Field Crops Res. – volume: 7 start-page: 1641 year: 2013 end-page: 1650 ident: bib34 article-title: Temporal variability in soil microbial communities across land-use types publication-title: ISME J. – volume: 433 start-page: 531 year: 2005 end-page: 537 ident: bib10 article-title: Interaction network containing conserved and essential protein complexes in Escherichia coli publication-title: Nature – volume: 11 start-page: 2294 year: 2017 end-page: 2304 ident: bib25 article-title: Shifts in rhizosphere fungal community during secondary succession following abandonment from agriculture publication-title: ISME J. – volume: 103 start-page: 1184 year: 2011 end-page: 1193 ident: bib36 article-title: ITS-1 versus ITS-2 pyrosequencing: a comparison of fungal populations in truffle grounds publication-title: Mycologia – volume: 149 year: 2020 ident: bib24 article-title: Fertilization regime has a greater effect on soil microbial community structure than crop rotation and growth stage in an agroecosystem publication-title: Appl. Soil Ecol. – volume: 10 start-page: 538 year: 2012 ident: 10.1016/j.agee.2021.107475_bib22 article-title: Microbial interactions: from networks to models publication-title: Nat. Rev. Microbiol. doi: 10.1038/nrmicro2832 – volume: 12 year: 2017 ident: 10.1016/j.agee.2021.107475_bib35 article-title: A comparison of per sample global scaling and per gene normalization methods for differential expression analysis of RNA-seq data publication-title: Plos One – volume: 30 start-page: 2114 year: 2014 ident: 10.1016/j.agee.2021.107475_bib8 article-title: Trimmomatic: a flexible trimmer for Illumina sequence data publication-title: Bioinformatics doi: 10.1093/bioinformatics/btu170 – volume: 7 start-page: 136 year: 2019 ident: 10.1016/j.agee.2021.107475_bib12 article-title: Root-associated microbiomes of wheat under the combined effect of plant development and nitrogen fertilization publication-title: Microbiome doi: 10.1186/s40168-019-0750-2 – volume: 121 start-page: 152 year: 2017 ident: 10.1016/j.agee.2021.107475_bib2 article-title: Exploring the reservoir of potential fungal plant pathogens in agricultural soil publication-title: Appl. Soil Ecol. doi: 10.1016/j.apsoil.2017.09.032 – volume: 149 year: 2020 ident: 10.1016/j.agee.2021.107475_bib24 article-title: Fertilization regime has a greater effect on soil microbial community structure than crop rotation and growth stage in an agroecosystem publication-title: Appl. Soil Ecol. doi: 10.1016/j.apsoil.2020.103510 – volume: 346 year: 2014 ident: 10.1016/j.agee.2021.107475_bib50 article-title: Fungal biogeography. Global diversity and geography of soil fungi publication-title: Science doi: 10.1126/science.1256688 – volume: 26 start-page: 923 year: 2017 ident: 10.1016/j.agee.2021.107475_bib28 article-title: Temporal dynamics of microbial communities in microcosms in response to pollutants publication-title: Mol. Ecol. doi: 10.1111/mec.13978 – volume: 103 start-page: 1184 year: 2011 ident: 10.1016/j.agee.2021.107475_bib36 article-title: ITS-1 versus ITS-2 pyrosequencing: a comparison of fungal populations in truffle grounds publication-title: Mycologia doi: 10.3852/11-027 – volume: 11 start-page: 2294 year: 2017 ident: 10.1016/j.agee.2021.107475_bib25 article-title: Shifts in rhizosphere fungal community during secondary succession following abandonment from agriculture publication-title: ISME J. doi: 10.1038/ismej.2017.90 – start-page: 1 year: 2010 ident: 10.1016/j.agee.2021.107475_bib64 article-title: Chapter one - rhizosphere processes and management for improving nutrient use efficiency and crop productivity: implications for China doi: 10.1016/S0065-2113(10)07001-X – volume: 20 start-page: 241 year: 2016 ident: 10.1016/j.agee.2021.107475_bib39 article-title: FUNGuild: an open annotation tool for parsing fungal community datasets by ecological guild publication-title: Fungal Ecol. doi: 10.1016/j.funeco.2015.06.006 – volume: 387 start-page: 413 year: 2015 ident: 10.1016/j.agee.2021.107475_bib42 article-title: Enzyme activity and microbial community structure in the rhizosphere of two maize lines differing in N use efficiency publication-title: Plant Soil doi: 10.1007/s11104-014-2306-3 – ident: 10.1016/j.agee.2021.107475_bib57 doi: 10.3389/fmicb.2017.01301 – volume: 61 start-page: 41 year: 2014 ident: 10.1016/j.agee.2021.107475_bib6 article-title: Plant traits regulating N capture define microbial competition in the rhizosphere publication-title: Eur. J. Soil Biol. doi: 10.1016/j.ejsobi.2014.01.002 – volume: 124 start-page: 3 year: 2005 ident: 10.1016/j.agee.2021.107475_bib9 article-title: Soil structure and management: a review publication-title: Geoderma doi: 10.1016/j.geoderma.2004.03.005 – volume: 710 year: 2020 ident: 10.1016/j.agee.2021.107475_bib58 article-title: Conservation tillage decreases selection pressure on community assembly in the rhizosphere of arbuscular mycorrhizal fungi publication-title: Sci. Total Environ. doi: 10.1016/j.scitotenv.2019.136326 – volume: 7 start-page: 1641 year: 2013 ident: 10.1016/j.agee.2021.107475_bib34 article-title: Temporal variability in soil microbial communities across land-use types publication-title: ISME J. doi: 10.1038/ismej.2013.50 – volume: 15 start-page: 550 year: 2021 ident: 10.1016/j.agee.2021.107475_bib21 article-title: Biodiversity of key-stone phylotypes determines crop production in a 4-decade fertilization experiment publication-title: ISME J. doi: 10.1038/s41396-020-00796-8 – volume: 85 start-page: 170 year: 2015 ident: 10.1016/j.agee.2021.107475_bib5 article-title: Plant nitrogen uptake drives rhizosphere bacterial community assembly during plant growth publication-title: Soil Biol. Biochem. doi: 10.1016/j.soilbio.2015.03.006 – volume: 255 year: 2020 ident: 10.1016/j.agee.2021.107475_bib56 article-title: No-tillage and subsoiling increased maize yields and soil water storage under varied rainfall distribution: A 9-year site-specific study in a semi-arid environment publication-title: Field Crops Res. doi: 10.1016/j.fcr.2020.107867 – volume: 10 start-page: 1741 year: 2019 ident: 10.1016/j.agee.2021.107475_bib41 article-title: Modulation of the root microbiome by plant molecules: the basis for targeted disease suppression and plant growth promotion publication-title: Front. Plant Sci. doi: 10.3389/fpls.2019.01741 – volume: 46 start-page: 63 year: 2012 ident: 10.1016/j.agee.2021.107475_bib14 article-title: Pyrosequencing and mid-infrared spectroscopy reveal distinct aggregate stratification of soil bacterial communities and organic matter composition publication-title: Soil Biol. Biochem. doi: 10.1016/j.soilbio.2011.11.012 – volume: 197 start-page: 1104 year: 2013 ident: 10.1016/j.agee.2021.107475_bib54 article-title: Mycorrhizal fungal establishment in agricultural soils: factors determining inoculation success publication-title: New Phytol. doi: 10.1111/j.1469-8137.2012.04348.x – volume: 197 year: 2020 ident: 10.1016/j.agee.2021.107475_bib59 article-title: Tillage practices with different soil disturbance shape the rhizosphere bacterial community throughout crop growth publication-title: Soil Tillage Res. doi: 10.1016/j.still.2019.104501 – volume: 20 start-page: 221 year: 2019 ident: 10.1016/j.agee.2021.107475_bib18 article-title: Soil domestication by rice cultivation results in plant-soil feedback through shifts in soil microbiota publication-title: Genome Biol. doi: 10.1186/s13059-019-1825-x – volume: 194 year: 2019 ident: 10.1016/j.agee.2021.107475_bib20 article-title: Bacterial and fungal diversity in rhizosphere and bulk soil under different long-term tillage and cereal/legume rotation publication-title: Soil Tillage Res. doi: 10.1016/j.still.2019.104302 – volume: 46 start-page: 405 year: 2010 ident: 10.1016/j.agee.2021.107475_bib27 article-title: Influence of mouldboard plough and rotary harrow tillage on microbial biomass and nutrient stocks in two long-term experiments on loess derived Luvisols publication-title: Appl. Soil Ecol. doi: 10.1016/j.apsoil.2010.09.011 – volume: 10 year: 2014 ident: 10.1016/j.agee.2021.107475_bib38 article-title: Oral mycobiome analysis of HIV-infected patients: identification of pichia as an antagonist of opportunistic fungi publication-title: Plos Pathog. doi: 10.1371/journal.ppat.1003996 – volume: 3 start-page: 112 year: 2019 ident: 10.1016/j.agee.2021.107475_bib7 article-title: Petunia- and arabidopsis-specific root microbiota responses to phosphate supplementation publication-title: Phytobiomes J. doi: 10.1094/PBIOMES-12-18-0057-R – volume: 8 start-page: 1127 year: 2017 ident: 10.1016/j.agee.2021.107475_bib15 article-title: Temporal dynamics of soil microbial communities below the seedbed under two contrasting tillage regimes publication-title: Front. Microbiol. doi: 10.3389/fmicb.2017.01127 – volume: 36 start-page: 499 year: 2004 ident: 10.1016/j.agee.2021.107475_bib49 article-title: Soil microbial dynamics in maize-growing soil under different tillage and residue management systems publication-title: Soil Biol. Biochem. doi: 10.1016/j.soilbio.2003.10.026 – volume: 4 start-page: 210 year: 2020 ident: 10.1016/j.agee.2021.107475_bib16 article-title: Multiple elements of soil biodiversity drive ecosystem functions across biomes publication-title: Nat. Ecol. Evol. doi: 10.1038/s41559-019-1084-y – volume: 42 start-page: 13 year: 1991 ident: 10.1016/j.agee.2021.107475_bib31 article-title: Crop growth and relative growth rates of old and modern wheat cultivars publication-title: Aust. J. Agric. Res. doi: 10.1071/AR9910013 – volume: 86 start-page: 759 year: 1994 ident: 10.1016/j.agee.2021.107475_bib51 article-title: Soil compaction and root growth: a review publication-title: Agron. J. doi: 10.2134/agronj1994.00021962008600050004x – volume: 26 start-page: 139 year: 2010 ident: 10.1016/j.agee.2021.107475_bib44 article-title: edgeR: a bioconductor package for differential expression analysis of digital gene expression data publication-title: Bioinformatics doi: 10.1093/bioinformatics/btp616 – ident: 10.1016/j.agee.2021.107475_bib40 doi: 10.1101/863399 – volume: 20 start-page: 642 year: 2009 ident: 10.1016/j.agee.2021.107475_bib3 article-title: Rhizosphere chemical dialogues: plant–microbe interactions publication-title: Curr. Opin. Biotechnol. doi: 10.1016/j.copbio.2009.09.014 – volume: 27 start-page: 2194 year: 2011 ident: 10.1016/j.agee.2021.107475_bib17 article-title: UCHIME improves sensitivity and speed of chimera detection publication-title: Bioinformatics doi: 10.1093/bioinformatics/btr381 – volume: 7 start-page: 146 year: 2019 ident: 10.1016/j.agee.2021.107475_bib45 article-title: Agricultural management and plant selection interactively affect rhizosphere microbial community structure and nitrogen cycling publication-title: Microbiome doi: 10.1186/s40168-019-0756-9 – volume: 37 start-page: 477 year: 2013 ident: 10.1016/j.agee.2021.107475_bib52 article-title: A thready affair: linking fungal diversity and community dynamics to terrestrial decomposition processes publication-title: FEMS Microbiol. Rev. doi: 10.1111/1574-6976.12001 – volume: 37 start-page: 44 year: 2017 ident: 10.1016/j.agee.2021.107475_bib60 article-title: Conservation tillage enhances the stability of the rhizosphere bacterial community responding to plant growth publication-title: Agron. Sustain. Dev. doi: 10.1007/s13593-017-0454-6 – volume: 37 start-page: 8 year: 2017 ident: 10.1016/j.agee.2021.107475_bib66 article-title: The unseen rhizosphere root–soil–microbe interactions for crop production publication-title: Curr. Opin. Microbiol. doi: 10.1016/j.mib.2017.03.008 – volume: 295 start-page: 2051 year: 2002 ident: 10.1016/j.agee.2021.107475_bib53 article-title: Extensive fungal diversity in plant roots publication-title: Science doi: 10.1126/science.295.5562.2051 – volume: 138 year: 2019 ident: 10.1016/j.agee.2021.107475_bib37 article-title: Fate of photosynthesized carbon as regulated by long-term tillage management in a dryland wheat cropping system publication-title: Soil Biol. Biochem. doi: 10.1016/j.soilbio.2019.107581 – volume: 186 start-page: 281 year: 2010 ident: 10.1016/j.agee.2021.107475_bib1 article-title: The UNITE database for molecular identification of fungi–recent updates and future perspectives publication-title: New Phytol. doi: 10.1111/j.1469-8137.2009.03160.x – volume: 19 start-page: 926 year: 2016 ident: 10.1016/j.agee.2021.107475_bib47 article-title: The interconnected rhizosphere: High network complexity dominates rhizosphere assemblages publication-title: Ecol. Lett. doi: 10.1111/ele.12630 – volume: 111 start-page: 1478 year: 2019 ident: 10.1016/j.agee.2021.107475_bib55 article-title: Improving zinc concentration and bioavailability of wheat grain through combined foliar applications of zinc and pesticides publication-title: Agron. J. doi: 10.2134/agronj2018.09.0597 – volume: 41 start-page: 919 year: 2009 ident: 10.1016/j.agee.2021.107475_bib62 article-title: Bacterial communities in soybean rhizosphere in response to soil type, soybean genotype, and their growth stage publication-title: Soil Biol. Biochem. doi: 10.1016/j.soilbio.2008.10.027 – volume: 21 start-page: 89 year: 2020 ident: 10.1016/j.agee.2021.107475_bib67 article-title: The preceding root system drives the composition and function of the rhizosphere microbiome publication-title: Genome Biol. doi: 10.1186/s13059-020-01999-0 – volume: 192 start-page: 285 year: 1997 ident: 10.1016/j.agee.2021.107475_bib30 article-title: Seasonal changes of arbuscular mycorrhizal fungi as affected by tillage practices and fertilization: hyphal density and mycorrhizal root colonization publication-title: Plant Soil doi: 10.1023/A:1004205828485 – volume: 85 start-page: 23 year: 2005 ident: 10.1016/j.agee.2021.107475_bib29 article-title: Tillage or no-tillage: Impact on mycorrhizae publication-title: Can. J. Plant Sci. doi: 10.4141/P03-160 – volume: 7 start-page: 335 year: 2010 ident: 10.1016/j.agee.2021.107475_bib11 article-title: QIIME allows analysis of high-throughput community sequencing data publication-title: Nat. Methods doi: 10.1038/nmeth.f.303 – volume: 45 start-page: 436 year: 2009 ident: 10.1016/j.agee.2021.107475_bib23 article-title: Urease, invertase, dehydrogenase and polyphenoloxidase activities in paddy soil influenced by allelopathic rice variety publication-title: Eur. J. Soil Biol. doi: 10.1016/j.ejsobi.2009.06.003 – volume: 24 start-page: 10108 year: 2017 ident: 10.1016/j.agee.2021.107475_bib65 article-title: Effects of straw and biochar amendments on aggregate stability, soil organic carbon, and enzyme activities in the Loess Plateau, China publication-title: Environ. Sci. Pollut. R. doi: 10.1007/s11356-017-8505-8 – volume: 198 start-page: 656 year: 2013 ident: 10.1016/j.agee.2021.107475_bib33 article-title: Competition between roots and microorganisms for nitrogen: mechanisms and ecological relevance publication-title: New Phytol. doi: 10.1111/nph.12235 – volume: 116 start-page: 747 year: 2012 ident: 10.1016/j.agee.2021.107475_bib43 article-title: Relationships between the litter colonization by saprotrophic and arbuscular mycorrhizal fungi with depth in a tropical forest publication-title: Fungal Biol. doi: 10.1016/j.funbio.2012.04.003 – volume: 225 start-page: 960 year: 2020 ident: 10.1016/j.agee.2021.107475_bib19 article-title: Plant growth rate and nitrogen uptake shape rhizosphere bacterial community composition and activity in an agricultural field publication-title: New Phytol. doi: 10.1111/nph.16171 – volume: 129 start-page: 99 year: 2019 ident: 10.1016/j.agee.2021.107475_bib46 article-title: Cover cropping and no-till increase diversity and symbiotroph:saprotroph ratios of soil fungal communities publication-title: Soil Biol. Biochem. doi: 10.1016/j.soilbio.2018.11.010 – volume: 38 start-page: 277 year: 2017 ident: 10.1016/j.agee.2021.107475_bib32 article-title: Evaluation and standardization of growth stage of wheat against spot blotch caused by Bipolaris sorokiniana publication-title: J. Environ. Biol. doi: 10.22438/jeb/38/2/MS-179 – volume: 16 start-page: 567 year: 2018 ident: 10.1016/j.agee.2021.107475_bib4 article-title: Keystone taxa as drivers of microbiome structure and functioning publication-title: Nat. Rev. Microbiol. doi: 10.1038/s41579-018-0024-1 – volume: 126 start-page: 159 year: 2018 ident: 10.1016/j.agee.2021.107475_bib13 article-title: Soil fungal taxonomic and functional community composition as affected by biochar properties publication-title: Soil Biol. Biochem. doi: 10.1016/j.soilbio.2018.09.001 – volume: 142 year: 2020 ident: 10.1016/j.agee.2021.107475_bib61 article-title: Ecological clusters based on responses of soil microbial phylotypes to precipitation explain ecosystem functions publication-title: Soil Biol. Biochem. doi: 10.1016/j.soilbio.2020.107717 – volume: 6 start-page: 14 year: 2018 ident: 10.1016/j.agee.2021.107475_bib26 article-title: Cropping practices manipulate abundance patterns of root and soil microbiome members paving the way to smart farming publication-title: Microbiome doi: 10.1186/s40168-017-0389-9 – volume: 8 start-page: 192 year: 2017 ident: 10.1016/j.agee.2021.107475_bib48 article-title: Editorial: biotrophic plant-microbe interactions publication-title: Front. Plant Sci. doi: 10.3389/fpls.2017.00192 – volume: 11 start-page: 56 year: 2017 ident: 10.1016/j.agee.2021.107475_bib63 article-title: Functional traits dominate the diversity-related selection of bacterial communities in the rhizosphere publication-title: ISME J. doi: 10.1038/ismej.2016.108 – volume: 21 start-page: 89 year: 2020 ident: 10.1016/j.agee.2021.107475_bib68 article-title: The preceding root system drives the composition and function of the rhizosphere microbiome publication-title: Genome Biol. doi: 10.1186/s13059-020-01999-0 – volume: 433 start-page: 531 year: 2005 ident: 10.1016/j.agee.2021.107475_bib10 article-title: Interaction network containing conserved and essential protein complexes in Escherichia coli publication-title: Nature doi: 10.1038/nature03239 |
SSID | ssj0000238 |
Score | 2.4659464 |
Snippet | Agricultural management measures, including tillage, considerably alter the rhizosphere fungal community; however, traditional snapshot sampling fail to... |
SourceID | proquest crossref elsevier |
SourceType | Aggregation Database Enrichment Source Index Database Publisher |
StartPage | 107475 |
SubjectTerms | agricultural management agriculture agroecosystems community structure conservation tillage conventional tillage developmental stages environment fungal communities Fungal community fungi plant growth Plant traits Plant-microbe interaction Rhizosphere saprotrophs Tillage tillering wheat |
Title | Wheat rhizosphere fungal community is affected by tillage and plant growth |
URI | https://dx.doi.org/10.1016/j.agee.2021.107475 https://www.proquest.com/docview/2574320234 |
Volume | 317 |
hasFullText | 1 |
inHoldings | 1 |
isFullTextHit | |
isPrint | |
link | http://utb.summon.serialssolutions.com/2.0.0/link/0/eLvHCXMwnV1LT8JAEN4QvOjBKErEB1kTb6ZA6ZbSIyEQlMhBJXLbbLdTxJBCoBy4-NudabcSjeHgqWmz2zSz80y_-YaxO-UFCosTZflRI7KE79hWoNHcFWpLFGJA0TY1Jz-NWoOxeJy4kwLr5r0wBKs0vj_z6am3Nk_qRpr15WxWfyEAPWqf3yQaIS_rYBceaXntcwfzoJiU83vTatM4k2G80GSJKrNp1wiXSFjDv4PTLzedxp7-CTs2SSPvZN91ygoQl9hRZ7oyxBlQYuXermMNlxqTXZ-xx9Td8hVh69bEIQAcYxnGBa6z3pBky2drrlJcB4Q82PKEJhFNgas45Ms5ip5PsVhP3s_ZuN977Q4sM0DB0o7jJBaE2lauamvf9RXWXS4-9gRACzztRY4IwAWnqYhvBlpaBEpFtmroyAsp0Wm3nDIrxosYLhjH1AhAANauEIomEJGd1iEmgwGAgsivMDuXnNSGXZyGXMxlDiP7kCRtSdKWmbQr7P57zzLj1ti72s0PRP7QEInOf---2_z0JJoO_Q9RMSw2a4neSqTj48XlP999xQ7pLsOcXbNistrADSYpSVBNtbDKDjoPw8GIrsPnt-EXCvzopw |
linkProvider | Elsevier |
linkToHtml | http://utb.summon.serialssolutions.com/2.0.0/link/0/eLvHCXMwtV3JSsRAEC1cDupBXHG3BT1JHJN0JubgQVwY14sK3tpOpzKOSGaYRGQu_pQ_aFXSURTxIHjtpJtQVV0LefUKYFOHsabiRDtRups6MvJdJzZ03TVZS5pQQDEuNydfXjVbt_LsLrgbgre6F4Zhldb3Vz699NZ2pWGl2eh1Oo1rBtCT9UUe0wiFkWuRlec4eKG6Ld8_PSIlb3neyfHNYcuxowUc4_t-4WBiXB3oPRMFkaaKJKDlUCI2MTRh6ssYA_Q9zUws2DQy1jp19a5Jw4RTgL2mT-cOw6gkd8FjE3ZeP3ElHARrQnH-PNupU4HKyEcwN6fn7jAQksGNP0fDb3GhDHYnUzBps1RxUAliGoYwm4GJg3bfMnXgDMwff7bI0avWR-SzcFb6d9FnMF_OpAUoKHhSIBKmakYpBqKTC10CSTAR8UAUPPqojUJnieg9ka5Fu999KR7m4PZfxDoPI1k3wwUQlIshSqRiGRPpITPnGZNQ9hkjakyjRXBrySlj6cx5qsaTqnFrj4qlrVjaqpL2Imx_7OlVZB6_vh3UClFfTFJRtPl130atPUV3lX_A6Ay7z7ki9yjLefVy6Y9nr8NY6-byQl2cXp0vwzg_qQBvKzBS9J9xlTKkIl4rLVLA_X9fgXd5QSON |
openUrl | ctx_ver=Z39.88-2004&ctx_enc=info%3Aofi%2Fenc%3AUTF-8&rfr_id=info%3Asid%2Fsummon.serialssolutions.com&rft_val_fmt=info%3Aofi%2Ffmt%3Akev%3Amtx%3Ajournal&rft.genre=article&rft.atitle=Wheat+rhizosphere+fungal+community+is+affected+by+tillage+and+plant+growth&rft.jtitle=Agriculture%2C+ecosystems+%26+environment&rft.au=Li%2C+Yuze&rft.au=Wang%2C+Ziting&rft.au=Li%2C+Tong&rft.au=Zhao%2C+Deqiang&rft.date=2021-09-01&rft.issn=0167-8809&rft.volume=317+p.107475-&rft_id=info:doi/10.1016%2Fj.agee.2021.107475&rft.externalDBID=NO_FULL_TEXT |
thumbnail_l | http://covers-cdn.summon.serialssolutions.com/index.aspx?isbn=/lc.gif&issn=0167-8809&client=summon |
thumbnail_m | http://covers-cdn.summon.serialssolutions.com/index.aspx?isbn=/mc.gif&issn=0167-8809&client=summon |
thumbnail_s | http://covers-cdn.summon.serialssolutions.com/index.aspx?isbn=/sc.gif&issn=0167-8809&client=summon |